ID:

dsi_25640

 Coordinate:

3l:7211608-7211673 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.0 -10.9 -10.9

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

GCCTGTACTTTCAGATACGCGACGACTATTGCAATCTGAGTCTGAAAGAGGTGAGCGTATGAATGGTTGGCAATATGCATAAGTCATTGTTAATCTGTGATGACATTCCGCTGTAGTACACGGAGAACAAGAGCTTCGCCGAGGACTTGACGGAGGGCAAGTTCGG
**************************************************...((((...((((((((((((((..((....)).))))))))).........)))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M023
head
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
.............GATACGCGACGACTATTGC...................................................................................................................................... 19 0 1 3.00 3 3 0 0 0 0 0 0 0 0
.................................AGCTGAGTCTGAAAGATTTGA................................................................................................................ 21 3 2 3.00 6 0 6 0 0 0 0 0 0 0
.......CTTTCAGATACGCGACGACT........................................................................................................................................... 20 0 1 2.00 2 0 0 0 2 0 0 0 0 0
.....................................................................................................................................CTTCGCCGAGGACTTGAC............... 18 0 1 2.00 2 0 0 2 0 0 0 0 0 0
...........................................................................................................................AGAACAAGAGCTTCGCCGAGG...................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.........................................................................................................................................GCCGAGGACTTGACGGAGT.......... 19 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................AAGAGGTGAGCGTATGAATGG.................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTGAGCGTATGAATGGTTGGCAA............................................................................................. 23 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................AACAAGAGCTTCGCCGAGGAC.................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
....................GACGACTATTGCAATCTGAGT............................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................ACGACTATTGCAATCTGAGTC............................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................AAGCTGAGTCTGAAAGATTTGA................................................................................................................ 22 3 2 1.00 2 0 2 0 0 0 0 0 0 0
............................................................................................................................GAACAAGAGCTTCGCCGAG....................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................CCGAGGACTTGACGGAGGGCA....... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
..............................................................................................................................................GGAATTGACGGAGGGCA....... 17 1 2 0.50 1 0 0 0 0 0 0 1 0 0
....................................................................................................TGGAATTCCGCTGTAGTA................................................ 18 2 2 0.50 1 0 0 0 0 0 1 0 0 0
..........................................................................................................TCCGCTGTAGCACAC............................................. 15 1 5 0.40 2 0 0 0 0 0 1 1 0 0
................................AAGCTGAGTCTGAAAGATTTG................................................................................................................. 21 3 9 0.33 3 0 3 0 0 0 0 0 0 0
............................................................................................................................................AAGGAATTGACGGAGGGCA....... 19 2 4 0.25 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................TCCCTGAGGACGTGACGGA............ 19 3 4 0.25 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................GAATTGACGGAGGGCA....... 16 1 4 0.25 1 0 0 0 0 0 0 0 1 0
..........................................................................................................TCCGCTGTAGCACACAG........................................... 17 2 9 0.22 2 0 0 0 0 0 1 1 0 0
.....................................GAGTCCGGAAGAGGTGAGTG............................................................................................................. 20 3 5 0.20 1 0 0 0 0 0 0 0 0 1
..........................................................................................................TCCGCTGTAGTACAATG........................................... 17 2 5 0.20 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................AATTGACGGAGGGCA....... 15 1 11 0.18 2 0 1 0 0 0 0 0 1 0
...................................CTGAGTCTGAAAGAT.................................................................................................................... 15 1 6 0.17 1 0 1 0 0 0 0 0 0 0
................................AAGCTGAGTCTGAAAGAT.................................................................................................................... 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................AAGGAATTGACGGAGGGC........ 18 2 8 0.13 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................TCGCCGAGGACCTGA................ 15 1 10 0.10 1 0 0 0 0 0 1 0 0 0
..................................................GTGAGCGCATGAATGGAT.................................................................................................. 18 2 14 0.07 1 0 0 1 0 0 0 0 0 0
.........................CTATTGTATTCTGAGTCGG.......................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0
..................................................................................................GATGGAATTCCGCTGTAGC................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 0 1
................................................................................................................................................ACTTGACGGATCGCAA...... 16 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

CGGACATGAAAGTCTATGCGCTGCTGATAACGTTAGACTCAGACTTTCTCCACTCGCATACTTACCAACCGTTATACGTATTCAGTAACAATTAGACACTACTGTAAGGCGACATCATGTGCCTCTTGTTCTCGAAGCGGCTCCTGAACTGCCTCCCGTTCAAGCC
**************************************************...((((...((((((((((((((..((....)).))))))))).........)))))))))....************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR553488
RT_0-2 hours eggs
.............CTATGCGCTGCTGGTAACGTT.................................................................................................................................... 21 1 1 1.00 1 1 0 0 0
..................CGCTGCTGATAACGTTATACAT.............................................................................................................................. 22 3 1 1.00 1 0 1 0 0
..................CGCTGCTGATAACGTTAGAC................................................................................................................................ 20 0 1 1.00 1 0 0 1 0
..........................................................................................................................CTCTTGTTCTCGGAGCGGCTC....................... 21 1 1 1.00 1 1 0 0 0
............................................................................................................................CTAGTTCTCGAAGCGGA......................... 17 2 20 0.10 2 0 1 0 1
.............................................................................................................................TAGTTCTCGAAGCGG.......................... 15 1 17 0.06 1 0 1 0 0
.........................................................................................................................................CGGGTCCCGAACTGCC............. 16 2 20 0.05 1 0 1 0 0

Generated: 04/23/2015 at 09:32 PM