ID:

dsi_25623

 Coordinate:

2r:5651792-5651900 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5651674_5651791_+]; CDS [2r_5651674_5651791_+]; CDS [2r_5651901_5652109_+]; exon [2r_5651901_5652109_+]; intron [2r_5651792_5651900_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------##################################################
TTCACGTCCGTGGAGAAGAACGCCGATGGAACCATCATCTTCAGCTACAGGTGAGTGCCGGGAGCCTGAGGAGCAGGCCTTTGATTAGGTTAGCACTTGCCCCTCAGAGCAGCCAGTGTGAATATGTCTGATACGATCGATCCCTATCGAGCGATGCAGATGTCTGCACGAGTCTCAAATCTTTCCGCCGGGCCGCTCCATCTGGTGCA
**************************************************......((.((..((((((((.((((((((......)))......))))).)))))).))..)).))..........(((...((.(((((....))))).))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 M053
female body
 SRR902008
ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
.................................................................................................................................................ATCGACCGATCCTGATGTCT............................................ 20 3 4 10.00 40 19 16 1 2 0 0 0 2 0 0 0 0
.................................................................................................................................................ATCGACCGATCCTGATGTC............................................. 19 3 9 4.22 38 13 17 3 3 0 0 1 1 0 0 0 0
...................................................................GAGGAGCCTGCGTTTGATTAG......................................................................................................................... 21 3 2 3.00 6 4 2 0 0 0 0 0 0 0 0 0 0
....................................................................AGGAGCCTGCGTTTGATTAG......................................................................................................................... 20 3 4 2.25 9 5 4 0 0 0 0 0 0 0 0 0 0
..........TGGAGAAGAACGCCGATGGAACC................................................................................................................................................................................ 23 0 1 2.00 2 0 0 0 0 1 1 0 0 0 0 0 0
.TCACGTCCGTGGAGAAGAACGCCG........................................................................................................................................................................................ 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................................TCGACCGATCCTGATGTCT............................................ 19 3 16 0.56 9 5 3 0 1 0 0 0 0 0 0 0 0
........GGTGGATAAGAACGCGGATGGA................................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................TATCGACCGATCCTGATGTC............................................. 20 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
......................CGGATGGAACCATCATATTCT...................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0 0
.....................................................................GGAGCCTGCGTTTGATTAG......................................................................................................................... 19 3 14 0.29 4 3 1 0 0 0 0 0 0 0 0 0 0
.................................................GGTGAGGGCCGAGAGGCTGA............................................................................................................................................ 20 3 6 0.17 1 0 0 0 0 0 0 0 0 0 1 0 0
.............AGAAGAACCCCCATGGA................................................................................................................................................................................... 17 2 7 0.14 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................AATCGACCGATGCTGATGTC............................................. 20 3 7 0.14 1 0 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................TGAGACGTTCGGTCCCTA............................................................... 18 3 11 0.09 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................GCTTCCCGCCGGGCCGC............. 17 2 12 0.08 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................AACCCTCATCTTCAGTT................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................GTTCGATCCCTTTCGCGC......................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0 0
...AGGTCCGAGGAGAAGATCG........................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

AAGTGCAGGCACCTCTTCTTGCGGCTACCTTGGTAGTAGAAGTCGATGTCCACTCACGGCCCTCGGACTCCTCGTCCGGAAACTAATCCAATCGTGAACGGGGAGTCTCGTCGGTCACACTTATACAGACTATGCTAGCTAGGGATAGCTCGCTACGTCTACAGACGTGCTCAGAGTTTAGAAAGGCGGCCCGGCGAGGTAGACCACGT
**************************************************......((.((..((((((((.((((((((......)))......))))).)))))).))..)).))..........(((...((.(((((....))))).))...)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
................................GTAGTAGAAGTCGATGTCC.............................................................................................................................................................. 19 0 1 1.00 1 1 0 0
.................................TAGTAGAAGTCGATGTCC.............................................................................................................................................................. 18 0 1 1.00 1 0 0 1
..............................TAGTAGTGGAAGTCGATGTCCT............................................................................................................................................................. 22 3 1 1.00 1 0 1 0
...............................AGTAGTAGAAGTCGATGTCCTG............................................................................................................................................................ 22 3 3 0.33 1 1 0 0
.................................................................................................................................CTTTGCTAGCTAGGG................................................................. 15 1 4 0.25 1 0 1 0

Generated: 04/23/2015 at 08:52 PM