ID:

dsi_25606

 Coordinate:

2r:20536074-20536223 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_20536224_20536397_+]; exon [2r_20536224_20536397_+]; intron [2r_20535497_20536223_+]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AATGGAAATGCACGGGATCGCCATCCATGAGCTGCGAAATATACAAAACAAATTAAGCTGCCTTTCATCTAAGAGCCATAAATAATAATGTTTCCTATGCGCCGCCCGACTTTCCCCCGCCCATCCACACATCTAAGCACCCAACCATTCCTCCATCCATCGAAAGTTTCTGAACGATTTGTTTTTCTGGCGCTTTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGGACGC
**************************************************.......((((...........(((.(((........))).)))....((((((...(((((((...............................................)))))))...((((.....))))...))))))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 M023
head
 M053
female body
 GSM343915
embryo
..............................................................................................................................................................................................................GAATTGTATCCGATCGCCC......................... 19 0 1 4.00 4 0 0 4 0 0
.....................................................................................................................................................................................................................................GACACAGAAAATGGAGGAC.. 19 0 1 4.00 4 4 0 0 0 0
...................................................................................................................................................................................................................GTATCCGATCGCCCGGCT..................... 18 0 1 3.00 3 2 1 0 0 0
................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCTGACACA............... 27 0 1 3.00 3 3 0 0 0 0
..................................................................................................................................................................................................................TGTATCCGATCGCCCGGC...................... 18 0 1 3.00 3 1 0 1 0 1
.................................................................................................................................................................................................................TTGTATCCGATCGCCCGGCT..................... 20 0 1 3.00 3 3 0 0 0 0
..........................................................................................................................................................................................................GAACGAATTGTATCCGATCGCCCGGCT..................... 27 0 1 2.00 2 0 2 0 0 0
........................................................................................................................................................................................................CTGAACGAATTGTATCCGAT.............................. 20 0 1 2.00 2 0 1 0 1 0
...................................................................................................................................................................................................................GTATCCGATCGCCCGGCTGACACA............... 24 0 1 2.00 2 0 2 0 0 0
...........................................................................................................................................................................................................AACGAATTGTATCCGATCGCC.......................... 21 0 1 1.00 1 0 1 0 0 0
..........................................................................................................................................................................................................GAACGAATTGTATCCGATCGCCCGG....................... 25 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................GTTTTTCTGGCGCTTTGCAGCTGAAC............................................ 26 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................GTATCCGATCGCCCGGCG..................... 18 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................................................CGCCCGGCTGACACAGAAAATGGAGG.... 26 0 1 1.00 1 1 0 0 0 0
................................................................................................................................................................................................................ATTGTATCCGATCGCCCG........................ 18 0 1 1.00 1 1 0 0 0 0
...............................................................................................................................................................................................................AATTGTATCCGATCGCCCGGCG..................... 22 1 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCG..................... 21 1 1 1.00 1 1 0 0 0 0
..................................................................................................................................................................................................................TGTATCCGATCGCCCGGCC..................... 19 1 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................CGAATTGTATCCGATCGCCCGGC...................... 23 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................................TGACACAGAAAATGGAGGACGC 22 0 1 1.00 1 0 0 0 0 1
..............................................................................................................................................................................................................GAATTGTATCCGATCGCCCGGCTGG................... 25 1 1 1.00 1 0 1 0 0 0
.........................................................................................................................................................................................................TGAACGAATTGTATCCGATCGCCC......................... 24 0 1 1.00 1 0 0 1 0 0
................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCT..................... 21 0 1 1.00 1 0 1 0 0 0
...................................................................................................................................................................................................................GTATCCGACCGCCCGGCT..................... 18 1 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................CGAATTGTATCCGATCGCC.......................... 19 0 1 1.00 1 0 0 1 0 0
........................................................................................................................................................................................................CTGAACGAATTGTATCCGATCGCCC......................... 25 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................................TTGTATCCGATCGCCCGGCTGACACA............... 26 0 1 1.00 1 0 1 0 0 0
........................................................................................................................................................................................................CTGAACGAATTGTATCCG................................ 18 0 1 1.00 1 0 0 0 1 0
..................................................................................................................................................................................................................TGTATCCGATCGCCCGGCT..................... 19 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................................TGACACAGAAAATGGAGGA... 19 0 1 1.00 1 0 0 0 1 0
.....................................................................................................................................................................................................................ATCCGATCGCCCGGCTGACACAGAA............ 25 0 1 1.00 1 0 1 0 0 0
....................................................................................................................................................................................................................................TGACACAGAAAATGGAGGAC.. 20 0 1 1.00 1 0 1 0 0 0
...............................................................................................................................................................................................................AATTGTATCCGATCGCCCGGC...................... 21 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................TTGTAGCTGAACGAATTCT..................................... 19 2 3 0.33 1 0 0 0 1 0
..........CCCGGGTTCGCCATGCATG............................................................................................................................................................................................................................. 19 3 13 0.08 1 0 0 1 0 0

Anti-sense strand reads

TTACCTTTACGTGCCCTAGCGGTAGGTACTCGACGCTTTATATGTTTTGTTTAATTCGACGGAAAGTAGATTCTCGGTATTTATTATTACAAAGGATACGCGGCGGGCTGAAAGGGGGCGGGTAGGTGTGTAGATTCGTGGGTTGGTAAGGAGGTAGGTAGCTTTCAAAGACTTGCTAAACAAAAAGACCGCGAAACGTCGACTTGCTTAACATAGGCTAGCGGGCCGACTGTGTCTTTTACCTCCTGCG
**************************************************.......((((...........(((.(((........))).)))....((((((...(((((((...............................................)))))))...((((.....))))...))))))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 GSM343915
embryo
 SRR902009
testis
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR1275487
Male larvae
..................................................................................................CGCCGCTGGCTGAAAGGG...................................................................................................................................... 18 2 2 16.00 32 21 10 0 0 0 0 0 1 0 0 0 0
..................................................................................................CGCCGCTGGCTGAAAGGGTGC................................................................................................................................... 21 3 1 3.00 3 1 2 0 0 0 0 0 0 0 0 0 0
..................................................................................................CGCCGCTGGCTGAAAGGGTG.................................................................................................................................... 20 3 8 2.13 17 6 11 0 0 0 0 0 0 0 0 0 0
.................................................................................................CCGCCGCTGGCTGAAAGGG...................................................................................................................................... 19 3 20 1.30 26 17 4 0 0 0 0 0 0 1 0 3 1
...........................................................................................................................................GGGTTGGTCAGGAGGAAGGT........................................................................................... 20 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..................................................................................................CGCCGCGGGCTGAAAGGG...................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................CGGGCTGAAAGGGGACGAG................................................................................................................................ 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................GGGGCGGGTAGGTGTGTAGAT................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................AGCGGGCCGACTGTATC.............. 17 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...CCTTTACGTGCCCTAGCGGTAG................................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................AATGTTGGTAAGGAGGTAGGTAGCT....................................................................................... 25 3 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................GCGGGCTGAAAGGGGACGAG................................................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................CCGCTGGCTGAAAGGGTGC................................................................................................................................... 19 3 20 0.90 18 9 8 0 0 0 0 0 0 0 1 0 0
................................................................................................................AGGGGATGGGTAGGTGTGT....................................................................................................................... 19 2 2 0.50 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................GGGGTTGGTCAGGAGGAAGGT........................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................CAGGTTGGTAGCTTTCAA.................................................................................. 18 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................GGGGTTGGTTAGGAGGAAGGT........................................................................................... 21 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0 0 0
.......................................................................................................CGGGCTGAAAGGGGACGAGC............................................................................................................................... 20 3 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
................................................................................TTATTATGACAAAGAATAGGC..................................................................................................................................................... 21 3 10 0.10 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GGGTTGGTTAGGCGGAAGGT........................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................GGGTTGGTTAGGAGGAAGCT........................................................................................... 20 3 12 0.08 1 0 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................GCGGCGGGCTAAAAGG....................................................................................................................................... 16 1 13 0.08 1 0 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................CGCCGCTGGCTGAAAGGGC..................................................................................................................................... 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGGAAGGTAGCTTTC.................................................................................... 15 1 14 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................GTGTCGATTCGTTGGTTG......................................................................................................... 18 2 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0
..................................................................................................CGCGGCGGGCTAAAAGT....................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 0 0 0 0 1 0 0 0
.................................................................................................................GGGGATGGGTAGGTGTGT....................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:20536024-20536273 + dsi_25606 A-----------ATGGAAATGCACGGG------------------------------------------AT---------CG-------C--CATCCAT--------GAGCTGC---GAAATATA------------------------------CAAAACAAATTAAGCT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TCCT--ATG-CGC-------C-----GC----C----CG------ACTTTCCCCC----GCCCATCCACACATCTA----------------------------------------------------AGCACCCAACCATTCCTCC-------------------ATC--------------------CATCGAA-AGTTTCTGAACGATTTG---TTTT-TCTGGC---------GCTTTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGG--------ACGC
droSec2 scaffold_5:290618-290867 + A-----------ATGGAAATGCACGGG------------------------------------------AT---------CG-------C--CATCCAT--------GAGCTGC---GAAATATA------------------------------CAAAACAAATTAAGCT----GTCTTTCATCTAAGAGCCATAAATAATAATGTT-TCCT--ATG-CGC-------C-----GC----C----CG------ACTTTCCCCC----GCCCATCCATACATCTA----------------------------------------------------AGCATCCAACCATTCCTCC-------------------ATC--------------------CATCGAA-AGTATCTGAACGGTTTG---TTTT-TCTGGC---------GCTTTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGG--------ACGC
dm3 chr2R:20043123-20043376 + A-----------ATGGAAATGCACGGG------------------------------------------TT---------CG-------C--CATCCAT--------GAGCTGC---GAAATATA------------------------------CAAAACAAATTAAGCT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TCCT--ATG-CGC-------C-----GC----C----CG------ACTTTCCTCCGACCGCCCATCCATACATCTA----------------------------------------------------AGCATCCAACCATCCCTCC-------------------ATC--------------------CATCGAA-AGTATCTGAACGATTTG---TTTT-TCTGGC---------GCTTTGCAGCTGAACGACTTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGG--------ACGC
droEre2 scaffold_4845:21413647-21413868 + A-----------ATGGAAATGCACGGC------------------------------------------AT---------CG-------T--CATCCAT--------GAGCTAC---AAAATATA------------------------------CAAAACAAATTA--TT----GCCTTTCATCTAAGAGCCATAAATTATAATGTG-TTCT--ATG-CAC-------C-----GC----C----CG------ACTTTCCCCC----------------------------------A-TCCCCC------A-------------TC---------CG--------------------------------------C--------------------CATCCAA-AGTATCTGAACGATTTG---CT-TGTCTGCC---------GTTTCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGG--------ACGC
droYak3 2R:20015079-20015316 + A-----------ATGGAAATGCACGGC------------------------------------------AT---------CG-------T--CATCCAT--------GAGCTAC---GAAATATT------------------------------CAAAACAAATTAAGCT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATG-CAC-------C-----GC----C----CC------TCTATCCCCC----------------------------------A-TCCCAT------A-------------CTC--------------------------A--------------------CT----A-T--TCACTATCCAATATCCAA-AGTATCTGAACGATTTG---TT-TGTGTGCC---------GTTTCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGG--------ACGC
droEug1 scf7180000409464:410692-410969 + AGTGAAATGAAAATGAAAATGCAAGGGGATGGCG-----------------A---------CGCGCCGGAT---------CG-------T--CATCCAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-CGC-------C-----GTTCGCCGGT-TG------CCGTTCCTCC----------------------------------A-CCTCCACCTCTAC-------------CTT--------------------------C------------ACCCAAAATC--------------------TACCCAT-AATATCTGAACGATTTG---TTTTGTCTGCTCC---CGCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTAACACAGAAAATGGAGG--------ACGC
droBia1 scf7180000302143:585319-585567 + G-----------ATGGCGT------------------------------------------CGCCCCGGAT---------CG-------T--CATCCAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAC----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-CGC-------C-----GC-CGCA----CG----------TCCCCC----------------------------ACCTCCA-CCTCCA------C-------------CTC--------------------------CGGC------CCAGACCCAAACC--------------------CAGCCAA-AGTATCTAAGCGATTTG---TTTTGTCTGCTCC---GGCA--TTTGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------ACGC
droTak1 scf7180000415666:102587-102849 + A-----------ATGAAAATGCACGGGGATGGCG-----------------T---------CGCCACGGAT---------CG-------T--CATCCAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAGAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--AAA-CGC-------C-----GC-CGTT----CG------TCTTTCCTCC----------------------------------A-CCTCAA------A-------------CCC--------------------------GAAC------CCAAACCCAAACC--------------------CAGATAT-AATATCTAAGCGATTTG---TTTTGTCTGCTCC---GGCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------ACGC
droEle1 scf7180000491214:5026251-5026516 - A-----------ATGAAAATGCACGGGGATGGCG-----------------T---------CG--------------CGTCG-------C----TACAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAC----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-TGC-------C----TGC-CGCT----CG------TCTTTCCTCC----------------------------------A-CCTCAA------A-------------CTC--------------------------ATGCCCAGCCCCAGCCACAATAA------TAA-----------TAATAAT-AATAACTGAACGATTTG---TTTTGTCTGCCGG---GGCA--TTTGCAGCTGAACGACTTATATCCGATTTCCCGGCTGACACAGAAAATGGAGG--------ACGC
droRho1 scf7180000777386:81263-81510 + A-----------ATGAAAATGCACGGGGATGGCG-----------------T---------CG--------------CGTCG-------C----TACAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-CGC-------C-----GC----A----CG------TCTTTCCTCC----------------------------------A-CCTCAA------A-------------CCC--------------------------A--------------------CCCAGAAAAAA-----------TAATAAT-AATGTCTGAACGATTTG---TTTTGTCTGCTCC---CGCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------ACGC
droFic1 scf7180000453858:1774277-1774506 + A-----------ATGAAAATGCACGGGGATAGCG-----------------T---------CG--------------CGTCG-------C--TCTACAT--------GTGCTAC---AAAATATA------------------------------CAAAACAATTTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATACTGTT-TTCT--ATA-CGC-------G-----GT----T----CG------TCTTTCCCCC----------------------------------A-CCTCAG------A-------------GCC-----------------------------------------------------------------------------TCAATCTAAACGATTTG---TTTTGTCTGCTCC----GCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACGCAGAAAATGGAGG--------ACGC
droKik1 scf7180000302277:1168056-1168324 - A-----------ATGGAAATGCACGGGAATGGCA-----------------T---------CG--------------TG---------------TACATGTGTACATGAGCTACACAAAAATATA------------------------------CAAAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTTTTTCT--ATAGCGT-------C-----GT----A----CG------CTTTTCCCGC----------------------------------A-CC-CAA------G-------------CCCCTC-----AGCTCCCA-----------GTC------CCAGTCCCAGTCC------CGG-----------TCAGAGT-CACTACTTAACGATTTG---TTTTGTCTGCC----------TTTCACAGCTAAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------GATC
droAna3 scaffold_13266:14357353-14357614 - G-----------GGGAAAATGCAGGGTTCTGGCG-----------------A---------CG-------T---------CG-------T--CACACATGT------GTGCTATTC-GAAA-AGAAAAACAATAACAAATATATCAACGTATATACAGAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TGCT--CTA-TGT-------C-----GTATGTAGGTT---------TTTTCCCCC----------------------------------AACCTTAG---------------------------------CACCC-------------------------------------------------------------------ATTAACGATTTTATATTTTGTATTTC----------CTTTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAG--------AAGC
droBip1 scf7180000396428:471440-471693 + A-------------GAAAATGCAGGGTTCTGGCG-----------------A---------CG-------T---------CG-------T--CACACATGT------GTGCTATTC-GAAA-ACACAAACAA-----AATATATCAATGTATATACACAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TGCT--CCA-CGT-------C-----GTATGTAGGTT---------TTTTTCCCC---------------------------------AA-CCTTAA------T-------------GCC---------------------------------------------------------------------------------CATTAACGATTTC---TA---TTTGGTAT---TTCC--TTTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAG--------AGGC
dp5 3:7738331-7738634 + A-----------ATGGAAATGCAAGTGAAAAGCGAAAAGCTAACCCGAGCGATGCGGCAGTCG-------C---------CG-------C--CACACAT--------GTGCTAC---AAAATATA------------------------------CACAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATTATCATGTT-AGCT--ATA-CGTACAGT-CCGTACG-----GTCGTTTGTTTTCTATTT--TTCC----------------------------ACGTCC-------ACGTCCAC-------------GTCC--CCATACGAACCGAACC--------------------------------------------------C--ACAA-CGGATCTAAACGATTTG---TTTTGTCTGCTTCTCACACA--CTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGG--------ACGT
droPer2 scaffold_4:1648933-1649219 + A-----------ATGGAAATGCAAGTGAAAAGCG-----------------ATGCGGCAGTCG-------C---------CG-------C--CACACAT--------GTGCTAC---AAAATATA------------------------------CACAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATTATCATGTT-AGCT--ATA-CGTACAGT-CCGTACG-----GTCGTTTGTTTTCTATTT--TTCC----------------------------ACGTCC-------ACGTCCAC-------------GTCC--CCATACGAACCGAACC--------------------------------------------------C--ACAA-CGGATCTAAACGATTTG---TTTTGTCTGCTTCTCACACA--CTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGG--------ACGT
droWil2 scf2_1100000004954:2871383-2871567 - --------------------------------------------------------------------------------CG-------C--CGTACATGT------G-GCCAG---AGAAAACA----CA-------------------------ATAACAAATTAATAT----GCCTCTCATTTAATAGTCATAAATTATCGTATATATAT--ATA-TGTAGATT------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------CATAGTG-TAGATTTTAACGATTTG---TTTTGTCTACT-----------TTTGCAGCTGAACGATTTATATCCCATTGCCCGTCTAACACAGAAAATGGAGG--------ACGT
droVir3 scaffold_12875:14962978-14963257 - dvi_7021 A-----------ATGCAAGTGAAAAGTC-----G-----------------CCGTCGC---CG-------TCGTCGTCGTCGTCTCATGG--CGCACAT--------GTGCTTC-----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCAATAAATAACCATAAT-AAATCGAAA-CATACATTGAAATACG-----AGCCTATAT---------------------------ATACTTATATATATATACATAT-------ATATCTATATAGATGTACTACCCAT--ACATGTGT-------------------------------------------------------------CTAGCTGATTTTTAACGCTTTTG--TTTCGT----------------CTTGCAGCTAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGG-----------ACGT
droMoj3 scaffold_6496:8879122-8879209 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACAGCTTG---TTTCGTCTAT------------TTCACAGCTGAACGATTTATATCCGATCACCCGTTTGACACAGAAATTGGACGTGCTTAATATGT
droGri2 scaffold_15245:14985345-14985594 - C-----------ATGGAAATGCAAGTGAAAAGTG-----------------C---------TGTCGT-------------GG-------AAAAACACAT--------GTGCTGC-----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCCATAAATAACGATAAT-AAATCTAGA-CATACAGA-ACAC---------ACATATATATACTATAT--AT------------------------------ACATCA-------ACTATTAC-------------GCTT--ATATGTGAATT---------------------------------------------------------GCTAG-TGAATTTTAACGATTTG---TTTCGTCT-----------------ACAGCTGAACGATTTATATCCGATCGCCCGTTTGACTCAGAAATTGGACGT-------GCTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A-----------ATGGAAATGCACGGG------------------------------------------AT---------CG-------C--CATCCAT--------GAGCTGC---GAAATATA------------------------------CAAAACAAATTAAGCT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TCCT--ATG-CGC-------C-----GC----C----CG------ACTTTCCCCC----GCCCATCCACACATCTA----------------------------------------------------AGCACCCAACCATTCCTCC-------------------ATC--------------------CATCGAA-AGTTTCTGAACGATTTG---TTTT-TCTGGC---------GCTTTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTATCCGATCGCCC.................................1914.00440000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGG--------AC..1914.00400400000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCT.............................1813.00301200000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCTGACACA.......................2713.00300300000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATCGCCCGGC..............................1813.00310100000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCGATCGCCCGGCT.............................2013.00300300000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAATTGTATCCGATCGCCCGGCT.............................2712.00202000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGAATTGTATCCGAT......................................2012.00201010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCTGACACA.......................2412.00202000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGAATTGTATCCGATCGCC..................................2111.00101000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGAATTGTATCCGATCGCCCGG...............................2511.00100100000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................G---TTTT-TCTGGC---------GCTTTGCAGCTGAAC....................................................2611.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCG.............................1811.00100100000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGGCTGACACAGAAAATGGAGG--------....2611.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCG................................1811.00100100000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTATCCGATCGCCCGGCG.............................2211.00101000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCG.............................2111.00100100000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATCGCCCGGCC.............................1911.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGTATCCGATCGCCCGGC..............................2311.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGG--------ACGC2211.00100000000000100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGTATCCGATCGCCCGGCTGG...........................2511.00101000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGAATTGTATCCGATCGCCC.................................2411.00110000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGCT.............................2111.00101000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAATTGTATCCGATCGCC..................................1911.00110000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGAATTGTATCCGATCGCCC.................................2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCGATCGCCCGGCTGACACA.......................2611.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGAATTGTATCCG........................................1811.00100010000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATCGCCCGGCT.............................1911.00100100000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGG--------A...1911.00100010000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCGCCCGGCTGACACAGAA....................2511.00101000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGG--------AC..2011.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTATCCGATCGCCCGGC..............................2111.00101000000000000000
droSec2
A-----------ATGGAAATGCACGGG------------------------------------------AT---------CG-------C--CATCCAT--------GAGCTGC---GAAATATA------------------------------CAAAACAAATTAAGCT----GTCTTTCATCTAAGAGCCATAAATAATAATGTT-TCCT--ATG-CGC-------C-----GC----C----CG------ACTTTCCCCC----GCCCATCCATACATCTA----------------------------------------------------AGCATCCAACCATTCCTCC-------------------ATC--------------------CATCGAA-AGTATCTGAACGGTTTG---TTTT-TCTGGC---------GCTTTGCAGCTGAACGAATTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGG--------ACGC2112.0020200
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTATCCGATCGCCCGGC..............................2112.0022000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCGATCGCCCGGC..............................1912.0020002
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCGGC..............................2011.0010010
.................................................................................................................................................................................CTTTCATCTAAGAGCCATAAATAATAAT....................................................................................................................................................................................................................................................................................................................2811.0010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGG--------A...1811.0010010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCCGGCTGACACAGA.....................2011.0010010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGACACAGAAAATGGAGG--------AC..2311.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACACAGAAAATGGAGG--------A...1911.0011000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGTATCCGATCGCCCG................................1811.0010010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAAATGGAGG--------AAC.1960.1711000
dm3
A-----------ATGGAAATGCACGGG------------------------------------------TT---------CG-------C--CATCCAT--------GAGCTGC---GAAATATA------------------------------CAAAACAAATTAAGCT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TCCT--ATG-CGC-------C-----GC----C----CG------ACTTTCCTCCGACCGCCCATCCATACATCTA----------------------------------------------------AGCATCCAACCATCCCTCC-------------------ATC--------------------CATCGAA-AGTATCTGAACGATTTG---TTTT-TCTGGC---------GCTTTGCAGCTGAACGACTTGTATCCGATCGCCCGGCTGACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................................................................................................GAGCTGC---GAAATATA------------------------------CAA...................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCGATCGCCCGGCTGA...........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATCGCCCGGCTG............................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCTGACACAGAAAATGGAGG--------A...2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................ATCTAAGAGCCATAAATA.........................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCT.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGATCGCCCGGCTGACACAGAAA...................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATCGCCCGGCT.............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCCGATCGCCCGGCTGACACAGAAAAT.................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCTGA...........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCCGGCTGACACAGAA....................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................ACCATCCCTCC-------------------ATC--------------------CATCGAA-AGT........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATCGCCC.................................2411.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTATCCGATCGCCCGGCTGAC..........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CTTTCATCTAAGAGCCATA.............................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCCCGGCTGACACAGAAAATGGA..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCGCCCGGCTGACACAGAAAA..................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCGCCCGGCTGACACAGAAAAG.................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCTGACACAGAAAATGGAGG--------ATC.2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATCGCCCGGCTGACACAGA.....................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCTGACACAGAAAATGGAGG--------AC..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAAATGGAGG--------AC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................T---------CG-------C--CATCCAT--------GAGCTGC---............................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAAATGGAGG--------AAC.1930.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAAATGGAGG--------AAC.18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000
droEre2
A-----------ATGGAAATGCACGGC------------------------------------------AT---------CG-------T--CATCCAT--------GAGCTAC---AAAATATA------------------------------CAAAACAAATTA--TT----GCCTTTCATCTAAGAGCCATAAATTATAATGTG-TTCT--ATG-CAC-------C-----GC----C----CG------ACTTTCCCCC----------------------------------A-TCCCCC------A-------------TC---------CG--------------------------------------C--------------------CATCCAA-AGTATCTGAACGATTTG---CT-TGTCTGCC---------GTTTCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTATCCGATTGCCCGG...............................1911.0010010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATTGCCCGGCTGACGCAGA.....................2411.0011000000
droYak3
A-----------ATGGAAATGCACGGC------------------------------------------AT---------CG-------T--CATCCAT--------GAGCTAC---GAAATATT------------------------------CAAAACAAATTAAGCT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATG-CAC-------C-----GC----C----CC------TCTATCCCCC----------------------------------A-TCCCAT------A-------------CTC--------------------------A--------------------CT----A-T--TCACTATCCAATATCCAA-AGTATCTGAACGATTTG---TT-TGTGTGCC---------GTTTCGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACGCAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCGATTGCCCGGC..............................2212.00201000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCCCGGCTGACGCAGAAAAT.................2312.00201000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCCCGGCTGACGCAGAA....................2112.00200000020000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATTGCCCGGCTGACGC........................2112.00200100010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGCAGAAAATGGAGG--------AC..2012.00200100010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGACTTGTATCCGATTGCCCGGC..............................2811.00100010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGACTTGTATCCGATTGCC..................................2211.00100100000000
........................................................................................................................................................................GCT----GCCTTTCATCTAAGAGCC................................................................................................................................................................................................................................................................................................................................2111.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTATCCGATTGCCCGGCT.............................2111.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCGATTGCCCGGCTGACGCA.......................2211.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTTGTATCCGATTGCCC.................................2111.00110000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGACTTGTATCCGATTGCCCGGCT.............................2811.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCGGCTGACGCAGAAA...................1911.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATCCGATTGCCCGGC..............................1811.00100001000000
droEug1
AGTGAAATGAAAATGAAAATGCAAGGGGATGGCG-----------------A---------CGCGCCGGAT---------CG-------T--CATCCAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-CGC-------C-----GTTCGCCGGT-TG------CCGTTCCTCC----------------------------------A-CCTCCACCTCTAC-------------CTT--------------------------C------------ACCCAAAATC--------------------TACCCAT-AATATCTGAACGATTTG---TTTTGTCTGCTCC---CGCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTAACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotal
No Reads
droBia1
G-----------ATGGCGT------------------------------------------CGCCCCGGAT---------CG-------T--CATCCAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAC----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-CGC-------C-----GC-CGCA----CG----------TCCCCC----------------------------ACCTCCA-CCTCCA------C-------------CTC--------------------------CGGC------CCAGACCCAAACC--------------------CAGCCAA-AGTATCTAAGCGATTTG---TTTTGTCTGCTCC---GGCA--TTTGCAGCTGAACGACTTGTATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotal
No Reads
droTak1
A-----------ATGAAAATGCACGGGGATGGCG-----------------T---------CGCCACGGAT---------CG-------T--CATCCAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAGAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--AAA-CGC-------C-----GC-CGTT----CG------TCTTTCCTCC----------------------------------A-CCTCAA------A-------------CCC--------------------------GAAC------CCAAACCCAAACC--------------------CAGATAT-AATATCTAAGCGATTTG---TTTTGTCTGCTCC---GGCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotal
No Reads
droEle1
A-----------ATGAAAATGCACGGGGATGGCG-----------------T---------CG--------------CGTCG-------C----TACAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAC----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-TGC-------C----TGC-CGCT----CG------TCTTTCCTCC----------------------------------A-CCTCAA------A-------------CTC--------------------------ATGCCCAGCCCCAGCCACAATAA------TAA-----------TAATAAT-AATAACTGAACGATTTG---TTTTGTCTGCCGG---GGCA--TTTGCAGCTGAACGACTTATATCCGATTTCCCGGCTGACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotal
No Reads
droRho1
A-----------ATGAAAATGCACGGGGATGGCG-----------------T---------CG--------------CGTCG-------C----TACAT--------GTGCTAC---AAAATATA------------------------------CAAAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TTCT--ATA-CGC-------C-----GC----A----CG------TCTTTCCTCC----------------------------------A-CCTCAA------A-------------CCC--------------------------A--------------------CCCAGAAAAAA-----------TAATAAT-AATGTCTGAACGATTTG---TTTTGTCTGCTCC---CGCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotal
No Reads
droFic1
A-----------ATGAAAATGCACGGGGATAGCG-----------------T---------CG--------------CGTCG-------C--TCTACAT--------GTGCTAC---AAAATATA------------------------------CAAAACAATTTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATACTGTT-TTCT--ATA-CGC-------G-----GT----T----CG------TCTTTCCCCC----------------------------------A-CCTCAG------A-------------GCC-----------------------------------------------------------------------------TCAATCTAAACGATTTG---TTTTGTCTGCTCC----GCA--TTTGCAGCTGAACGACTTATATCCGATTGCCCGGCTGACGCAGAAAATGGAGG--------ACGCSizeHit CountTotal NormTotal
No Reads
droKik1
A-----------ATGGAAATGCACGGGAATGGCA-----------------T---------CG--------------TG---------------TACATGTGTACATGAGCTACACAAAAATATA------------------------------CAAAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTTTTTCT--ATAGCGT-------C-----GT----A----CG------CTTTTCCCGC----------------------------------A-CC-CAA------G-------------CCCCTC-----AGCTCCCA-----------GTC------CCAGTCCCAGTCC------CGG-----------TCAGAGT-CACTACTTAACGATTTG---TTTTGTCTGCC----------TTTCACAGCTAAACGACTTATATCCGATTGCCCGGCTGACACAGAAAATGGAGG--------GATCSizeHit CountTotal NormTotal
No Reads
droAna3
G-----------GGGAAAATGCAGGGTTCTGGCG-----------------A---------CG-------T---------CG-------T--CACACATGT------GTGCTATTC-GAAA-AGAAAAACAATAACAAATATATCAACGTATATACAGAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TGCT--CTA-TGT-------C-----GTATGTAGGTT---------TTTTCCCCC----------------------------------AACCTTAG---------------------------------CACCC-------------------------------------------------------------------ATTAACGATTTTATATTTTGTATTTC----------CTTTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAG--------AAGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTATATCCGATCGCCCGACT.............................2314.004100030
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTATATCCGATCGCCC.................................1912.002110000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGACCTATATCCGATCGCCCGACT.............................2712.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCCGACTGACACAGAAA...................2211.001100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTGACACAGAAAATGGGAG--------A...2311.001000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACCTATATCCGATCGCCCGACTGAC..........................2711.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATATCCGATCGCCCGACT.............................2211.001010000
droBip1
A-------------GAAAATGCAGGGTTCTGGCG-----------------A---------CG-------T---------CG-------T--CACACATGT------GTGCTATTC-GAAA-ACACAAACAA-----AATATATCAATGTATATACACAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATAATAATGTT-TGCT--CCA-CGT-------C-----GTATGTAGGTT---------TTTTTCCCC---------------------------------AA-CCTTAA------T-------------GCC---------------------------------------------------------------------------------CATTAACGATTTC---TA---TTTGGTAT---TTCC--TTTGCAGCTCAACGACCTATATCCGATCGCCCGACTGACACAGAAAATGGGAG--------AGGCSizeHit CountTotal NormTotal
No Reads
dp5
A-----------ATGGAAATGCAAGTGAAAAGCGAAAAGCTAACCCGAGCGATGCGGCAGTCG-------C---------CG-------C--CACACAT--------GTGCTAC---AAAATATA------------------------------CACAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATTATCATGTT-AGCT--ATA-CGTACAGT-CCGTACG-----GTCGTTTGTTTTCTATTT--TTCC----------------------------ACGTCC-------ACGTCCAC-------------GTCC--CCATACGAACCGAACC--------------------------------------------------C--ACAA-CGGATCTAAACGATTTG---TTTTGTCTGCTTCTCACACA--CTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGG--------ACGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGT...............................2113.0030200100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACACAGAAAATGGAGG--------AC..2113.0030300000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACACAGAAAATGGAG.............2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACACAGAAAATGGAG.............1811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGTCT.............................2311.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCGTCTGACACAGAAAATGGAGG--------AC..2711.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCGCTCGTCTGACACAGAAA...................2611.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGACTTGTATCCCATCGCT..................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGTATCCCATCGCTCGT...............................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTCTGACACAGAAAATGGAGG--------A...2311.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTATCCCATCGCTCGTCTGACAC........................2611.0010001000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACTTGTATCCCATCGCTCGT...............................2211.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACACAGAAAATGGA..............1911.0010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATCGCTCGTCTGACACAG......................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGTCTGACA.........................2711.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACAGAAAATGGAGG--------ACGT2011.0010000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACACAGAAAATGGAGG--------AC..2311.0010100000000
droPer2
A-----------ATGGAAATGCAAGTGAAAAGCG-----------------ATGCGGCAGTCG-------C---------CG-------C--CACACAT--------GTGCTAC---AAAATATA------------------------------CACAACAAATTAAAAT----GCCTTTCATCTAAGAGCCATAAATTATCATGTT-AGCT--ATA-CGTACAGT-CCGTACG-----GTCGTTTGTTTTCTATTT--TTCC----------------------------ACGTCC-------ACGTCCAC-------------GTCC--CCATACGAACCGAACC--------------------------------------------------C--ACAA-CGGATCTAAACGATTTG---TTTTGTCTGCTTCTCACACA--CTTGCAGCTGAACGACTTGTATCCCATCGCTCGTCTGACACAGAAAATGGAGG--------ACGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATCGCTCGTCTGACACAG......................2013.003300000
..............................................................................................................................................................................................................................................................................................................................................ATACGAACCGAACC--------------------------------------------------C--ACAA-CGG........................................................................................................2212.002200000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTGTATCCCATCGCTCGT...............................2112.002101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCGCTCGTCTGACA.........................2012.002200000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATCCCATCGCTCGTCTGACACAGA.....................2812.002200000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACTTGTATCCCATCGCC..................................2011.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGCTCGTCTGACACAGAAAATGGAG.............2711.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAGAAAATGGAGG--------ACG.1811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCCATCGCTCGTCTGA...........................1811.001100000
droWil2
--------------------------------------------------------------------------------CG-------C--CGTACATGT------G-GCCAG---AGAAAACA----CA-------------------------ATAACAAATTAATAT----GCCTCTCATTTAATAGTCATAAATTATCGTATATATAT--ATA-TGTAGATT------------------------------------------------------------------------------------------------------------------------------------------------------C--------------------CATAGTG-TAGATTTTAACGATTTG---TTTTGTCTACT-----------TTTGCAGCTGAACGATTTATATCCCATTGCCCGTCTAACACAGAAAATGGAGG--------ACGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTATATCCCATTGCCCGT...............................2113.00300120
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATATCCCATTGCCCGT...............................2011.00101000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACACAGAAAATGGAGG--------AC..2111.00100100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGATTTATATCCCATTGCCCGT...............................2711.00110000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAACACAGAAAATGGAG.............1811.00100010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAACGATTTATATCCCATTGCC..................................2411.00110000
droVir3
A-----------ATGCAAGTGAAAAGTC-----G-----------------CCGTCGC---CG-------TCGTCGTCGTCGTCTCATGG--CGCACAT--------GTGCTTC-----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCAATAAATAACCATAAT-AAATCGAAA-CATACATTGAAATACG-----AGCCTATAT---------------------------ATACTTATATATATATACATAT-------ATATCTATATAGATGTACTACCCAT--ACATGTGT-------------------------------------------------------------CTAGCTGATTTTTAACGCTTTTG--TTTCGT----------------CTTGCAGCTAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGG-----------ACGTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACCCAGAAATTGG-----------ACG.1911.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAACGATTTGTATCCGATCGCCCGTCTGACCCAGAA....................3711.001000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGACCCAGAAATTGG-----------ACGT2211.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGCCCGTCTGACCCAGAA....................2111.001000100000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTTGTATCCGATCGCCCGTCTGACCCAGAAATTGG-----------A...3811.001000000000000000000000000000000000000000000000000000000000100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGACCCAGAAATTGG-----------ACGT2011.001000000000100000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGATTTGTATCCGAT......................................1811.001000000000000000000000000000001000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATCGCCCGTCTGACCC........................1811.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCCGTCTGACCCAGAAATTGG-----------ACG.2711.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGTATCCGATCGCCCGTCTGACCCAGAA....................3111.001000000000000000000000000000000000000000000000000000000000100000
.................................G-----------------CCGTCGC---CG-------TCGTCGTCGTCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................22170.061000000000000000000000000000100000000000000000000000000000000000
droMoj3
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTAACAGCTTG---TTTCGTCTAT------------TTCACAGCTGAACGATTTATATCCGATCACCCGTTTGACACAGAAATTGGACGTGCTTAATATGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTATATCCGATCACC..................................2211.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGTTTGACACAGAAATTG................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGAAATTGGACGTGCTT.......1911.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGATTTATATCCGATCACCC.................................2411.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACACAGAAATTGGACGT...........2011.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGACGTGCTTAATAT..1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTATATCCGATC.....................................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTATATCCGATCACCCGTTTGA...........................2911.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGATCACCCGTTTGACACAGA.....................2311.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACACAGAAATTGGACGTGCT........2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCCGTTTGACACAGAAATTGGA..............2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTATATCCGATCACCCGTTT.............................2711.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGATTTATATCCGATCACCC.................................2111.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGATCACCCGTTTGACACAGAAATTG................2711.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTATATCCGATCACCCGTTTGAC..........................2711.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTATATCCGATCACCCGT...............................2511.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATATCCGATCACCCGTTT.............................2011.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATTTATATCCGATCACCCGTTTGACA.........................2811.001100000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGTTTGACACAGAAATT.................2011.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTATATCCGATCACCCGTTTGACACA.......................2811.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTG---TTTCGTCTAT------------TTCACAG..........................................................2211.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTATATCCGATCACCC.................................2311.001100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGATTTATATCCGATCACCCGTTTGA...........................2811.001100000
droGri2
C-----------ATGGAAATGCAAGTGAAAAGTG-----------------C---------TGTCGT-------------GG-------AAAAACACAT--------GTGCTGC-----------------------------------------------AAATTAAAATGTCTGGCTTTCATCTAAGAGCCATAAATAACGATAAT-AAATCTAGA-CATACAGA-ACAC---------ACATATATATACTATAT--AT------------------------------ACATCA-------ACTATTAC-------------GCTT--ATATGTGAATT---------------------------------------------------------GCTAG-TGAATTTTAACGATTTG---TTTCGTCT-----------------ACAGCTGAACGATTTATATCCGATCGCCCGTTTGACTCAGAAATTGGACGT-------GCTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:45 PM