ID:

dsi_25601

 Coordinate:

2r:15534869-15535054 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.6 -4.2

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
GA-richLow_complexityLow_complexity+

Sense Strand Reads

ATCGAGGAGGAGAAGAAAGCGATGGCAGCTCCAACCAGGCGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAAGAAGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGAAGAAGAAGAAGATGAGGTGGAGGAGGAGGAGGAAGAACAAGTAGAGGAATCTGTAGAAGGGACTCCTAGGGAATTGCTTAACCTACCAGAGGAAGCTCTGCAACCGACCTCGTCTGAAGT
************************************************************************************************************************.(((...((.((....)).))...))).....................................................................********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M025
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 GSM343915
embryo
........................................................................................................................GCGTGGCCAGTGAAAGCAGTGACAG............................................................................................................................................. 25 0 1 2.00 2 0 2 0 0 0 0 0 0 0
ATCGAGGAGGAGAAGAAAGC.......................................................................................................................................................................................................................................................................... 20 0 1 2.00 2 0 2 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGTGACTTGTAGGGAATTGCTT......................................... 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
..............................................................................................................................TCAGTGAAGGCAGTGAAAGCGAA......................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................GAGGAGGAAGAACAAGTAGAGGAAT...................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGAA.................................................................................................................... 20 1 6 1.00 6 6 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................CAAGTAGAGGAATCTGTAGAAGGGA.......................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................ACGCGAGCGGAGGTAAGTGTGAA............................................................................................................................................................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................TCAGTGACAGTGAAGAAGAGGACG............................................................................................................................... 24 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................GAAGAGCAGGAGGAGGAAGAA.................................................................................................................... 21 1 5 0.60 3 3 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GAGGTGGAGGAGGAGGAGGAAG..................................................................................... 22 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGTGGAGGAGGAGGAGGAA...................................................................................... 20 0 3 0.33 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................TGGAAGAAGAAGTAGTTGAGGT...................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................GTGGAGGAGGAGGAGGAAG..................................................................................... 19 0 3 0.33 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GAGGTGGAGGAGGAGGAGGAA...................................................................................... 21 0 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................................GACGAGGTGGGAGAACAAGTA............................................................................. 21 3 3 0.33 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGTA.................................................................................................................... 20 2 7 0.29 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGAAAA.................................................................................................................. 22 2 8 0.25 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAGCAGGAGGAGGAAGAATA.................................................................................................................. 21 2 4 0.25 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................GAAGAAGAGGAGGAGTAGGAGGAA.................................................................................................................... 24 2 9 0.22 2 2 0 0 0 0 0 0 0 0
................AAGCGATCGCAGCTCCA............................................................................................................................................................................................................................................................. 17 1 5 0.20 1 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................GAAGAGCAGGAGGAGGAAGTA.................................................................................................................... 21 2 6 0.17 1 1 0 0 0 0 0 0 0 0
..........AGAAGCAAGCGATCGCAG.................................................................................................................................................................................................................................................................. 18 2 6 0.17 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................GAGCAGGAGGAGGAAGAATAA................................................................................................................. 21 2 6 0.17 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GAGCAGGAGGAGGAAGAATAA................................................................................ 21 2 6 0.17 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAGGAGGAGGAGGAGGAAGAAGAAG................................................................................................................ 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................GAGGAGGAGGAGGAGGAAGAAGAAG............................................................................................................. 25 1 7 0.14 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................AGAGCAGGAGGAGGAAGTAG................................................................................................................... 20 2 8 0.13 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................AGGTGGAGGAGGAGGAAGAA...................................................................................... 20 1 8 0.13 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................GAAGAGCAGGAGGAGGAATAA.................................................................................................................... 21 2 8 0.13 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGAGGAA................................................................................................................. 23 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................TGGAGGAGAAGGAGGAACAACG................................................................................. 22 3 9 0.11 1 0 0 0 0 0 0 1 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGAAT................................................................................................................... 21 2 9 0.11 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAAGAGCAGGAGGAGGAATTA.................................................................................................................... 21 3 20 0.10 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGAGGTA................................................................................................................. 23 3 20 0.10 2 2 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAAAAAAA................................................................................................................. 23 3 10 0.10 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................................................................AGAAGAAGATGAGGTCCATGA................................................................................................ 21 3 11 0.09 1 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................AGAGGAGGAGGAGGAA....................................................................................................................... 16 0 11 0.09 1 0 0 0 0 0 1 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAATAA.................................................................................................................... 20 2 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................GAGGACGCAGAAAAAGAAGATG.......................................................................................................... 22 3 11 0.09 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................................AGAGCAGGAGGAGGAAGTA.................................................................................................................... 19 2 12 0.08 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................GGTGGAGGAGGAGGAAGAA...................................................................................... 19 1 12 0.08 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................GAAGAGCAGGAGGAGGAAGAAA................................................................................................................... 22 2 12 0.08 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................GGTGGAGGAGGAGGAAGAA................................................................................... 19 1 12 0.08 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGCA.................................................................................................................... 20 2 13 0.08 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................GGAGTAGGGAGATCAAGTA............................................................................. 19 3 13 0.08 1 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................AGAGCAGGAGGAGGAATAA.................................................................................................................... 19 2 15 0.07 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................GAGGATGAGGTGGAAGAAGA.................................................................................................................. 20 2 17 0.06 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TCTGTAGAAGGAACT........................................................ 15 1 18 0.06 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................GAGCAGGAGGAGGAAGAA................................................................................... 18 1 19 0.05 1 1 0 0 0 0 0 0 0 0
........................................................................................................................................................GAGCAGGAGGAGGAAGAA.................................................................................................................... 18 1 19 0.05 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................AAGAGCAGGAGGAGGAAGTAA................................................................................................................... 21 3 20 0.05 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................GGAGGAGGAGAAAGAA.................................................................................................................... 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................GGAGGAGGAGAAAGAA................................................................................... 16 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAGCTCCTCCTCTTCTTTCGCTACCGTCGAGGTTGGTCCGCCGCAGGGGTCACGCATTATCACGCCGTAGGTGCTGCGCTCGTCTCCATTCACACTTACTCCGTTTATGTCTTCTTCTTCCGCACCGGTCACTTTCGTCACTGTCGCTTCTTCTCCTCCTCCTCCTTCTTCTTCTTCTACTCCACCTCCTCCTCCTCCTTCTTGTTCATCTCCTTAGACATCTTCCCTGAGGATCCCTTAACGAATTGGATGGTCTCCTTCGAGACGTTGGCTGGAGCAGACTTCA
**********************************************************************.(((...((.((....)).))...))).....................................................................************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M024
male body		 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................................TCGCTTCTTCTCCTCCTCCT........................................................................................................................... 20 0 2 1.00 2 2 0 0 0 0 0
.....................................................................GGTGCTGCGCTCGACTGC....................................................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0
.....................TACCGTCGAGGTAGG.......................................................................................................................................................................................................................................................... 15 1 13 0.23 3 0 0 0 3 0 0
..............................................................................................................................................................CTCCTCCCTCTACTTCTTTTAC.......................................................................................................... 22 3 5 0.20 1 0 0 0 0 1 0
....................................................................................................................CTTCAGGACCGGTCACTTT....................................................................................................................................................... 19 2 5 0.20 1 0 0 1 0 0 0
..........................................................ATCGCGCCGTAGTTGCTG.................................................................................................................................................................................................................. 18 2 7 0.14 1 0 0 0 1 0 0
.................TCAGTACCGTCGAGGTTAGT......................................................................................................................................................................................................................................................... 20 3 7 0.14 1 0 0 1 0 0 0
.......................................................................................................................................................................................................TCTAGTTCGTCTCCTTAG..................................................................... 18 2 9 0.11 1 0 0 0 0 0 1
...............................................................................................................................GTCACTTTCGTCTCTGTAAC........................................................................................................................................... 20 3 11 0.09 1 0 0 1 0 0 0
......................ACCGTCGAGGTCGGCCCG...................................................................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 1 0 0
..................................................................GTAGGTGCTGTGCTTGACT......................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 1
...........................................................................................................................................................CTACTGCTCCTTCTTCTTCTTAT............................................................................................................ 23 3 19 0.05 1 0 0 0 0 1 0
................................TCGGACCGCCGCAGGG.............................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:15534819-15535104 + dsi_25601 AT----CGAGG---------AGG---AGAAGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGAAGA-AG---AAGA---------AGATGAGGTGGAGGAGG---------------------------A---G---------------------------------------------GAGGAAGAACAAGTAGAGGAATCTGTAG---------------------------------------------------AAGGGACTCCTAGGGAATTGCT------------------TAACCTACCAGAGGAAGCTCTGCAACCGACCTC---GTCTGAAGT
droSec2 scaffold_1:12392130-12392418 + AT----CGAGG---------AGG---AGAAGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCCCCAGTGCGTAATAGTGCGACATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAAGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGAAGA-AG---AAGA---------AGAAG---------AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GAGGAAGAACAAGTAGAGGAATCTGTAG---------------------------------------------------AAGGGACTCCTAGGGAATTGCT------------------TAACCTACCAGAGGAAGCTCTGCAGCCGACCTC---TTCTGAAGT
dm3 chr2R:14885843-14886137 + AT----CGAGG---------CGG---AGAAGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGATGAGGAAGTTGAAGA-TG---AAGA---------TGAAG---------AAGA------AGAGGTAGAC---------GA---G---------------------------------------------GAGGAGGAACAAGTAGAAGAATCTGTAG---------------------------------------------AAGAAGAAGAGGCTCCCAGGGAATTGCT------------------GAACCTACCAGAGGAAGCTCTGCAACCGACCTC---ATCTGAAGT
droEre2 scaffold_4845:9081406-9081712 + der_1081 AT----CGAGG---------AGG---AGAGGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGATGAGGAGGTGGAG-G------A---GGAGGAGGAAG---------AAGA---CGAAGA---------------------GGAAGACGAGGATGAGGAG------------------------GAGGGGGAAGAACAAGCGGAGGAATCTGTAG---------------------------------------------------AAGATACGGGTAGGGAACTGCT------------------TAACCTCCCAGAAGAAGCTCTGCAGCCGACCTC---TTCTGAAGT
droYak3 2R:14307840-14308146 - dya_571 AT----CGTGG---------AGG---AGAGGAGAGTGATGGCAG---CTCCAACCAG------------------------GCGGCGTCTCCAGTGCGTAGTAGTGCGGCATCCACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGATGAAGAGGAGGAGGATGTAGAG-GAGGAAGA---------TGAAG---------AAGAAGACGAGGA---------------------GGAGGAAGATGATGAGGAG------------------------GAGGGTGAACAACAAGTAG---AACAAGTAG---------------------------------------------------AAGAAACGGGTAGGGAATTGCT------------------TAACCTCCCGGAAGAGTCACTGCAACCGACCTC---TTCTGAAGC
droEug1 scf7180000409663:443296-443566 - AT----CGAGG---------CGG---AGAAGAAAGCGATGGAAG---CTCCAACCAG------------------------GCAGCGTCTCCAGTGCGTAATAGTGCCGCAGCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAAGAAGA----------------------------------------------------------------------------------------------AGAGGA---------TGAGGGTCCAGAACAAGCAGAAGAATTTGCAG---------------------------------------------------AAGTGGCTTCTAGGGACCGGCT------------------TAACCCACCGGAGGAATCCCTGCAACCGACCTC---TTCCGAAGT
droBia1 scf7180000302292:1478880-1479138 - AT----CGAGG---------CGG---GGAGGAGAGCGACGGCAG---CTCCAACCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCAGCCTCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGAGGAGGAGGAGGC-------------------------------------------------------------------G---------------------------------------------GGGGGAGAGCAACCGGAAGAATCTGTTC---------------------------------------------------AAGTGGTTCTACAGGATGTGCT------------------TAGTCTA---GGAGAGCCTCAGCAGCCCACGTC---TTCCGAAGA
droTak1 scf7180000415991:355299-355584 + AT----CGAGG---------CGG---CGAAGAAAGCGACGGCAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCGGCCTCAACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAGAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGAGGA-TG---AGGA---------GGAAGAATCGGTAGAGG---------------------------A---G---------------------------------------------GGGGCAGAACAAGCTGAAGAATCTGTAG---------------------------------------------------AAGGGGCTCCTAGGGAATTGCT------------------TAATCCCCCAGAAGAATCTCTGCAGCCCACGTC---TTCCGAAGT
droEle1 scf7180000491228:23847-24111 - AT----CGGGG---------CGG---CGAAGAAAGTGACGGCAG---CTCTAACCAG------------------------GCGGCGTCTCCAGTGCGTAATAGTGCGGCATCTGCGACGCGGGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGACTGCAGTGACGGCGAAGAGGAAGAAGAAGAGGAAGA-------G---------------------------------------------------------------------------------------------------------G---------AGGGGGAAGAATCTGTAG---------------------------AGGC---GGAAATCG---------AAGAGGCTCCCAGGGAATCTCT------------------TAACCTTCCAGAGGAATCTCTGCAAGCAACCTC---TTCCGAAGA
droRho1 scf7180000779618:14832-15093 + AT----CGAGG---------CGG---CGAGGAAAGCGACGGCAG---CTCCAACCAG------------------------GCAGCGTCTCCAGTGCGTAATAGTGCGGCGACTACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAAGAAGAGGGGGAGGAGGAGGA----------------------------------------------------------------------------------------------GGAGGA---------T---------GAGGAGGGGGAGGAATCCGTAC---------------------------------------------------AGGAAGCTACCGGAAATGTGCT------------------TAACCTTCCAGAAGAAGCTCTTCAAGCTACATC---TTCCGAAGA
droFic1 scf7180000454044:681106-681445 + AT----CGAGG---------TGG---CGAAGAGAGCGATGGGAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGAAGAGGAAGGG-G------AGGAGG---AGGAGG---------AGGAGGA---GGA---------------------GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAATCAGCAGGGGAAG---GGGTAGAACAGGTGGAGGAACCTTCAG---------------------------TGGG---TGTGGTAG---------AAGAGGCTTCAAGAGAAGTTCT------------------TAATCTACCAGAAAAGGCTTCGAAAGCCACTTC---TTCGAAAGT
droKik1 scf7180000302682:642173-642449 + GC----CGCGG---------CGG---CGAGGACAGCGATGGAAG---CTCCACTCAG------------------------GCGGCGTCTCCAGTGCGTAATTCGGCGGCAGCGGCAACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAGGAAGAGGAGGAGGATGATGA-------GAC---TGAGGAGGAAG---------AT------------------------------------------------------------------------------------GATGAAGTAG---------------------------------------------------------------AAGAGTCTCCTGAGGTCCTGCCAGAGTTGGCCCAAGGTCTTAGCCCCCCAGAAGTGCCTGCAGAACCCACATC---CTCTGAACA
droAna3 scaffold_13266:17449112-17449382 - dan_2079 AC----CGCGG---------CGG---CGAGGACAGCGATGGCAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAAGA---------------------------------AGAAGCCCTGGCCAGCGAAGGCAGTGATAGCGAAGAGGAGGAGGAAGAAACAGA----------------------------------------------------------------------------------------------AGAGTCTGAAGAAAGTG------------AAGTAGAAC---------AGGAG------------------GCAG------------------------GTGTGGCGCCGCAGGACACGCT------------------TAATGTTCCAGAAGCTAGCCAGGATGCCTCATCGGGTTCCGAGGT
droBip1 scf7180000396735:710701-710971 - AT----CGCGG---------CGG---CGAGGACAGCGACGGCAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAAGA---------------------------------AGAAGCCATAGCCAGCGAAAGCAGTGACAGCGAAGAGGAGGAGGAAGAAACAGA----------------------------------------------------------------------------------------------AGAGTCTGAAGAAAGTG------------AAGTAGAAC---------AGGAG------------------GCAG------------------------AAGTAAGGCCACAGGACCAGCT------------------TGATGTGCCAGAAGCTAGCCAGGATGCCTCGTCGGCATCCGAGGT
dp5 3:5960601-5960838 + GTCCC-CGCGG---------TGG---CGAGGACAGCGACGGCAGTGGTTCCAATCAG------------------------GCGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGAGGAA-CAGGGGGC---------AGAAG---------AGGA------------AGAT---------CAGCAGCAG------------------------------------------CAG------------------------------------------------GCAGAGGTAGAGGAAGTCGAAAA-----------------------------------------------------------------------CGA-------CTCCGAAGA
droPer2 scaffold_2:6161557-6161789 + GTCCC-CGCGG---------TGG---CGAGGACAGCGACGGCAGTGGCTCTAATCAG------------------------GCGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGAGGAA-CAGGGGGC---------AGAAG---------AGGA------------AGAT---------CAGCAGCAG------------------------------------------CAG------------------------------------------------GCAGAAGTAGAGGAAGTCGAAAA--------CGACTCC---------------------------------------------------------------------------
droWil2 scf2_1100000004510:2489625-2489878 + dwi_441 GT----CGTGG---------TGG---AGAGGATAGCGATAGCAG---CACAAACCAG------------------------GCAGCATCTCCAGTGCGTACA---GCCACGACAAGCGCGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT---GAAGA---------------------------------AGAAGATCTGTCCAGTGA---CAGTGGCAGCGAGGAAGAGGACGACGAAGAGGA----------------------------------------------------------------------------------------------AGATGA---------TG------------CAGCAGTTG------AACA---GAAAGAAGTAGTGCCACAGGTACAAGAGGAGGAAAAGGAAAATGAGGATGAAGCTTCAA------------------------------------------------------CATCCTC---ATCAGAG--
droVir3 scaffold_12875:19589814-19590081 - dvi_7992 GT----GGCGGCCAGGGCGCCAG---CGAGGAGAGCGACAGCAGCAGCAATAATCAGTCGGCGAC------------AGCGGCGGCATCTCCAGTGCGTACAACGACAGCGTCGACAGCGCGAGCCGAGGTAAGTGTGAATGAAACAAAT---GAAGA---------------------------------AGAAGGCGTGGCCAGTGACAACAGTGGCAGCAGCGAGACGGAGAGTGAGACGGG-AA---GTGAGAGCG---------AGGCGGAGGAAGA------------AGAG---------CAGCAGCAG------------------------------------------CA----GCAGCAGCAGGCGCAGTTGGCG---------------------------------------------------CAG-----------------------------------------------------------------GCACC---CGCTGAGGA
droMoj3 scaffold_6496:6640233-6640555 - CG---AGGCGGCCTTGGCGGCAG---CGAGGAGAGCGACAGCAGCAGCAGCAATCAGGCAGCGACAGCAGCAGCGGCAGCGGCGGCATCTCCAGTGCGTACA---GCAACGGCGACAGCGCGAGCCGAGGTAAGTGTGAATGAGACAAATGAAGAAGATGAGGAAGCAGATGAGGAAGAAGAAGCAGAAGCAGAAGAGGAAGCCAGTGACAGCAGTGACAGCAGCGAAGCTGAGACTGGGACCGA-AA---GTGAGAGTG---------AGAGTGAGAGTGAGAC---------AGAGCAACAGCAGCAGCAGCAG------------------------------------------CAGGCAGAA-------------------------------------------------------------------------CA--------ACACCAGCT------------------GCAGCTGCCAGAGC---------------------------AGGT
droGri2 scaffold_15245:17961575-17961885 + GT----GGCGGCCAAGGAGCCAGTACAGAGGAGAGCGATGGCAGCAGCAGCAATCAAG---CGAC------------AACAGCATCATCTTCAGTGCGTACAGCAACAACGGCGACAGCACGAGCCGAGGTAAGTGTGAATGAAACAAATGAAGAAGAAGAAGTGGCAGCAGCAGCAGAAAATGATGA---AGTAGGTGTGGCCAGTGACGACAGTGGCAGCAGCGACATTGAGAGCGAAACAGA-AC---AA---------------------------------------------------------------------------------------GAGCG---------TG------------AACAAGTTC------AA---GAGCAAGAGTTGCAACCACAAGCAGTAGCGGTGATAAATGAAGATCA---------------------------------------------------AG--------TGG------ACAAC---GACGACGTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AT----CGAGG---------AGG---AGAAGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGAAGA-AG---AAGA---------AGATGAGGTGGAGGAGG---------------------------A---G---------------------------------------------GAGGAAGAACAAGTAGAGGAATCTGTAG---------------------------------------------------AAGGGACTCCTAGGGAATTGCT------------------TAACCTACCAGAGGAAGCTCTGCAACCGACCTC---GTCTGAAGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................GCGTGGCCAGTGAAAGCAGTGACAG.............................................................................................................................................................................................................................................................................................................2512.00200200000000000000
AT----CGAGG---------AGG---AGAAGAAAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200200000000000000
........................................................................................................................................................................................................................................................................................G---------------------------A---G---------------------------------------------GAGGAAGAACAAGTAGAGGAAT..............................................................................................................................................2511.00100000000000001000
...............................................................................................................................................................................................................................................................................................................................................................................CAAGTAGAGGAATCTGTAG---------------------------------------------------AAGGGA...............................................................................2511.00100100000000000000
............................................................................................................................................................................................................................................................................GAGGTGGAGGAGG---------------------------A---G---------------------------------------------GAGGAAG.............................................................................................................................................................2220.50100000000000001000
.............................................................................................................................................................................................................................................................................AGGTGGAGGAGG---------------------------A---G---------------------------------------------GAGGAA..............................................................................................................................................................2030.33100000000000001000
...............................................................................................................................................................................................................................................................................GTGGAGGAGG---------------------------A---G---------------------------------------------GAGGAAG.............................................................................................................................................................1930.33100000000000001000
............................................................................................................................................................................................................................................................................GAGGTGGAGGAGG---------------------------A---G---------------------------------------------GAGGAA..............................................................................................................................................................2130.33100000000000001000
...................................................................................................................................................................................................................................AGAGGAGGAGGAGGAA.......................................................................................................................................................................................................................................................................................16110.09100000000001000000
droSec2
AT----CGAGG---------AGG---AGAAGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCCCCAGTGCGTAATAGTGCGACATCCACGACGCGAGCAGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAAGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGAAGA-AG---AAGA---------AGAAG---------AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GAGGAAGAACAAGTAGAGGAATCTGTAG---------------------------------------------------AAGGGACTCCTAGGGAATTGCT------------------TAACCTACCAGAGGAAGCTCTGCAGCCGACCTC---TTCTGAAGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................G---------AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GAGGA...............................................................................................................................................................2323.0060501
............................................................................................................................................................................................................................................................................G---------AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GAGGAA..............................................................................................................................................................2412.0020200
............................................................................................................................................................................................................................................GGAGGAAGA-AG---AAGA---------AGAAG---------AGGT------GG........................................................................................................................................................................................................................................2611.0010100
..........................................................................................................CGACATCCACGACGCGAGCAGAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
..........................................................................................................................................................................................................................................................................AAG---------AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GAGGAAG.............................................................................................................................................................2711.0010100
............................................................................................................................................................................................................................................................................G---------AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GAGGAAG.............................................................................................................................................................2511.0010100
...................................................................................................................................................................................................................................AGAGGAGGAGGAGGAAGA-....................................................................................................................................................................................................................................................................................1860.5031200
.............................................................................................................................................................................................................................................GAGGAAGA-AG---AAGA---------AGAAG---------A...................................................................................................................................................................................................................................................2020.5011000
..........................................................................................................................................................................................................................................................................AAG---------AGGT------GGAGGAGGAG---------GA---..................................................................................................................................................................................................................1920.5010100
............................................................................................................................................................................................................................................................................G---------AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GA..................................................................................................................................................................2060.3320200
...............................................................................................................................................................................................................................AAGAAGAGGAGGAGGAGGAAGT-....................................................................................................................................................................................................................................................................................2230.3310001
....................................................................................................................................................................................................................................GAGGAGGAGGAGGAAGA-AG---A..............................................................................................................................................................................................................................................................................2050.2010100
......................................................................................................................................................................................................................................................................................AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GAG.................................................................................................................................................................2050.2010001
..................................................................................................................................................................................................................................AAGAGGAGGAGGAGGAAGA-....................................................................................................................................................................................................................................................................................1960.1710100
......................................................................................................................................................................................................................................................................................AGGT------GGAGGAGGAG---------GA---G---------------------------------------------G...................................................................................................................................................................18120.1720002
......................................................................................................................................................................................................................................................................................AGGT------GGAGGAGGAG---------GA---G---------------------------------------------GA..................................................................................................................................................................1980.1310001
..............................................................................................................................................................................................................................GAAGAAGAGGAGGAGGAGG.........................................................................................................................................................................................................................................................................................1990.1110100
.................................................................................................................................................................................................................................................................................................GAGGAGGAG---------GA---G---------------------------------------------GAGGAAG.............................................................................................................................................................19140.0711000
dm3
AT----CGAGG---------CGG---AGAAGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCCCCAGTGCGTAATAGTGCGGCATCCACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGATGAGGAAGTTGAAGA-TG---AAGA---------TGAAG---------AAGA------AGAGGTAGAC---------GA---G---------------------------------------------GAGGAGGAACAAGTAGAAGAATCTGTAG---------------------------------------------AAGAAGAAGAGGCTCCCAGGGAATTGCT------------------GAACCTACCAGAGGAAGCTCTGCAACCGACCTC---ATCTGAAGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................CCAGTGCGTAATAGTGCGGC............................................................................................................................................................................................................................................................................................................................................................................................................................2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......GAGG---------CGG---AGAAGAAAGCGATGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000001000000
.............................................................................................GTGCGTAATAGTGCGGCATCC........................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GGTAGAC---------GA---G---------------------------------------------GAGGAGGAACAAGTAGAA..................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................AGAATCTGTAG---------------------------------------------AAGAAGAAGA.................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................AG---CTCCAACCAG------------------------GCGGCGTCCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAGGGAATTGCT------------------GAAC.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................GGCATCCACGACGCGAGCTGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAGGCTCCCAGGGAAT...................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................G---CTCCAACCAG------------------------GCGGCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AGGTAGAC---------GA---G---------------------------------------------GAGGAGGAAC..........................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
...............................................................................................................................................................................................AGAAGGCGTGGCCAGTGAAAGCAGTGA................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................A---------------------------------AGAAGGCGTGGCCAGTGAAAGC.....................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGCTCCCAGGGAATTGC................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GTGCGTAATAGTGCGGCATCCACGA....................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................GTTGAAGA-TG---AAGA---------TGAAG---------AAGA------AGAGG.....................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................GAAAGCGATGGCAG---CTCCAACCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................AGGTAGAC---------GA---G---------------------------------------------GAGGAGGAACAAGTAGA...................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................GAAGAAAGCGATGGCAG---CTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................AGAAGA---------------------------------AGAAGGCGTGGC...............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................GTGCGTAATAGTGCGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.....................................................................................................................................................................................................CGTGGCCAGTGAAAGCAGTGA................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................AGTGCGTAATAGTGCGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................AGAAGAATCTGTAG---------------------------------------------AAGA.......................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................TAGAAGAATCTGTAG---------------------------------------------AAGA.......................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................TGAAGA-TG---AAGA---------TGAAG---------AA..................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AT----CGAGG---------AGG---AGAGGAAAGCGATGGCAG---CTCCAACCAG------------------------GCGGCGTCTCCAGTGCGTAATAGTGCGGCAACTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGATGAGGAGGTGGAG-G------A---GGAGGAGGAAG---------AAGA---CGAAGA---------------------GGAAGACGAGGATGAGGAG------------------------GAGGGGGAAGAACAAGCGGAGGAATCTGTAG---------------------------------------------------AAGATACGGGTAGGGAACTGCT------------------TAACCTCCCAGAAGAAGCTCTGCAGCCGACCTC---TTCTGAAGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................AAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGC.....................................................................................................................................................................................................................................................................................................................2611.0010001000
............................................................................................................................................TGAGGCAAATACAGAAGA---------------------------------AGAAGGC....................................................................................................................................................................................................................................................................................................................................2511.0011000000
...........................GAGGAAAGCGATGGCAG---CTCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000
..............................................................................................................AACTACGACGCGAGCCGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
...................................................................................................................................AAGTGTGAATGAGGCAAATAC..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
..............................................................................................................................................................................................................................GAGGAAGAGGATGAGGAGGG........................................................................................................................................................................................................................................................................................2060.1710001000
...........................................................................................................................................................................................................................................AGGAGGTGGAG-G------A---GGAGGA..................................................................................................................................................................................................................................................................1980.1311000000
............................................................................................................................................................................................................................................GGAGGTGGAG-G------A---GGAGGA..................................................................................................................................................................................................................................................................18150.0710000100
...............................................................................................................................................................................................................................................GGTGGAG-G------A---GGAGGAGGA...............................................................................................................................................................................................................................................................18180.0611000000
droYak3
AT----CGTGG---------AGG---AGAGGAGAGTGATGGCAG---CTCCAACCAG------------------------GCGGCGTCTCCAGTGCGTAGTAGTGCGGCATCCACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGATGAAGAGGAGGAGGATGTAGAG-GAGGAAGA---------TGAAG---------AAGAAGACGAGGA---------------------GGAGGAAGATGATGAGGAG------------------------GAGGGTGAACAACAAGTAG---AACAAGTAG---------------------------------------------------AAGAAACGGGTAGGGAATTGCT------------------TAACCTCCCGGAAGAGTCACTGCAACCGACCTC---TTCTGAAGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................GACGCGAGCCGAGGTAAGTGTGAATGA...........................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.............................................................................................GTGCGTAGTAGTGCGGCATCCACGACG..................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
....................................................................................................................GACGCGAGCCGAGGTAAGT...................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
...........................GAGGAGAGTGATGGCAG---CTCCAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
.......GTGG---------AGG---AGAGGAGAGTGATGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
............................................................................................AGTGCGTAGTAGTGCGGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000
AT----CGTGG---------AGG---AGAGGAGAGTGATGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
droEug1
AT----CGAGG---------CGG---AGAAGAAAGCGATGGAAG---CTCCAACCAG------------------------GCAGCGTCTCCAGTGCGTAATAGTGCCGCAGCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAAGAAGAGGAGGAGGAAGAAGA----------------------------------------------------------------------------------------------AGAGGA---------TGAGGGTCCAGAACAAGCAGAAGAATTTGCAG---------------------------------------------------AAGTGGCTTCTAGGGACCGGCT------------------TAACCCACCGGAGGAATCCCTGCAACCGACCTC---TTCCGAAGTSizeHit CountTotal NormTotal
No Reads
droBia1
AT----CGAGG---------CGG---GGAGGAGAGCGACGGCAG---CTCCAACCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCAGCCTCTACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAAAGCAGTGACAGCGAGGAAGAGGAGGAGGAGGAGGC-------------------------------------------------------------------G---------------------------------------------GGGGGAGAGCAACCGGAAGAATCTGTTC---------------------------------------------------AAGTGGTTCTACAGGATGTGCT------------------TAGTCTA---GGAGAGCCTCAGCAGCCCACGTC---TTCCGAAGASizeHit CountTotal NormTotal
No Reads
droTak1
AT----CGAGG---------CGG---CGAAGAAAGCGACGGCAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCGGCCTCAACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGAGAGCAGTGACAGCGAAGAAGAGGAGGAGGAGGAGGA-TG---AGGA---------GGAAGAATCGGTAGAGG---------------------------A---G---------------------------------------------GGGGCAGAACAAGCTGAAGAATCTGTAG---------------------------------------------------AAGGGGCTCCTAGGGAATTGCT------------------TAATCCCCCAGAAGAATCTCTGCAGCCCACGTC---TTCCGAAGTSizeHit CountTotal NormTotal
No Reads
droEle1
AT----CGGGG---------CGG---CGAAGAAAGTGACGGCAG---CTCTAACCAG------------------------GCGGCGTCTCCAGTGCGTAATAGTGCGGCATCTGCGACGCGGGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGACTGCAGTGACGGCGAAGAGGAAGAAGAAGAGGAAGA-------G---------------------------------------------------------------------------------------------------------G---------AGGGGGAAGAATCTGTAG---------------------------AGGC---GGAAATCG---------AAGAGGCTCCCAGGGAATCTCT------------------TAACCTTCCAGAGGAATCTCTGCAAGCAACCTC---TTCCGAAGASizeHit CountTotal NormTotal
No Reads
droRho1
AT----CGAGG---------CGG---CGAGGAAAGCGACGGCAG---CTCCAACCAG------------------------GCAGCGTCTCCAGTGCGTAATAGTGCGGCGACTACGACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAAGAAGAGGGGGAGGAGGAGGA----------------------------------------------------------------------------------------------GGAGGA---------T---------GAGGAGGGGGAGGAATCCGTAC---------------------------------------------------AGGAAGCTACCGGAAATGTGCT------------------TAACCTTCCAGAAGAAGCTCTTCAAGCTACATC---TTCCGAAGASizeHit CountTotal NormTotal
No Reads
droFic1
AT----CGAGG---------TGG---CGAAGAGAGCGATGGGAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCCGCATCGACGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAATGACAGCAGTGACAGCGAAGAAGAAGTTGAAGAGGAAGGG-G------AGGAGG---AGGAGG---------AGGAGGA---GGA---------------------GGAGGAGGAGGAGGAGGAGGAGGAAGAAGAATCAGCAGGGGAAG---GGGTAGAACAGGTGGAGGAACCTTCAG---------------------------TGGG---TGTGGTAG---------AAGAGGCTTCAAGAGAAGTTCT------------------TAATCTACCAGAAAAGGCTTCGAAAGCCACTTC---TTCGAAAGTSizeHit CountTotal NormTotal
No Reads
droKik1
GC----CGCGG---------CGG---CGAGGACAGCGATGGAAG---CTCCACTCAG------------------------GCGGCGTCTCCAGTGCGTAATTCGGCGGCAGCGGCAACGCGAGCTGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTGACAGCAGTGACAGCGAGGAAGAGGAGGAGGATGATGA-------GAC---TGAGGAGGAAG---------AT------------------------------------------------------------------------------------GATGAAGTAG---------------------------------------------------------------AAGAGTCTCCTGAGGTCCTGCCAGAGTTGGCCCAAGGTCTTAGCCCCCCAGAAGTGCCTGCAGAACCCACATC---CTCTGAACASizeHit CountTotal NormTotal
No Reads
droAna3
AC----CGCGG---------CGG---CGAGGACAGCGATGGCAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAAGA---------------------------------AGAAGCCCTGGCCAGCGAAGGCAGTGATAGCGAAGAGGAGGAGGAAGAAACAGA----------------------------------------------------------------------------------------------AGAGTCTGAAGAAAGTG------------AAGTAGAAC---------AGGAG------------------GCAG------------------------GTGTGGCGCCGCAGGACACGCT------------------TAATGTTCCAGAAGCTAGCCAGGATGCCTCATCGGGTTCCGAGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................GACAGCGATGGCAG---CTCCAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
AC----CGCGG---------CGG---CGAGGACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
....................................................ATCAG------------------------GCGGCGTCTCCAGTGCGTAACAG..................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
AC----CGCGG---------CGG---CGAGGACAGCGATGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
....................................................................................................................GACGCGGGCCGAGGTAAGTGTGAAT.............................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..................................................CAATCAG------------------------GCGGCGTCTCCAT............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
....................................GATGGCAG---CTCCAATCAG------------------------GC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droBip1
AT----CGCGG---------CGG---CGAGGACAGCGACGGCAG---CTCCAATCAG------------------------GCGGCGTCTCCAGTGCGTAACAGTGCAGCAACCGCGACGCGGGCCGAGGTAAGTGTGAATGAGACAAATACAGAAGA---------------------------------AGAAGCCATAGCCAGCGAAAGCAGTGACAGCGAAGAGGAGGAGGAAGAAACAGA----------------------------------------------------------------------------------------------AGAGTCTGAAGAAAGTG------------AAGTAGAAC---------AGGAG------------------GCAG------------------------AAGTAAGGCCACAGGACCAGCT------------------TGATGTGCCAGAAGCTAGCCAGGATGCCTCGTCGGCATCCGAGGTSizeHit CountTotal NormTotal
No Reads
dp5
GTCCC-CGCGG---------TGG---CGAGGACAGCGACGGCAGTGGTTCCAATCAG------------------------GCGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGAGGAA-CAGGGGGC---------AGAAG---------AGGA------------AGAT---------CAGCAGCAG------------------------------------------CAG------------------------------------------------GCAGAGGTAGAGGAAGTCGAAAA-----------------------------------------------------------------------CGA-------CTCCGAAGASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
....................................................................................................C---AGCGACAGCAGCGACGCGAGCCGAG.........................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
....................................................................................................C---AGCGACAGCAGCGACGCGAGCCGAGT........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000001000
.........................................................................................................................................................GAAGA---------------------------------AGAAGGCGTGGCCAGTG---GCA....................................................................................................................................................................................................................................................................................................................2511.0010100000000
.................................................................................................................................................................................................................................GTAGACGAGGAGAATGAGGAA-C..................................................................................................................................................................................................................................................................................2211.0010000000001
............................AGGACAGCGACGGCAGTGGTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................AATGAGGCAAATACAGAAGA---------------------------------AGAAGGC....................................................................................................................................................................................................................................................................................................................................2711.0010100000000
......CGCGG---------TGG---CGAGGACAGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.............................................................................................................CAGCAGCGACGCGAGCCGAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000001000
...........................................GTGGTTCCAATCAG------------------------GCGTCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100000
.............................................................................................GTGCGTAC---AGCGACAGCAGCGACGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................2911.0010001000000
droPer2
GTCCC-CGCGG---------TGG---CGAGGACAGCGACGGCAGTGGCTCTAATCAG------------------------GCGTCATCTCCAGTGCGTAC---AGCGACAGCAGCGACGCGAGCCGAGGTAAGTGTGAATGAGGCAAATACAGAAGA---------------------------------AGAAGGCGTGGCCAGTG---GCAGTGACAGCGAGGTAGACGAGGAGAATGAGGAA-CAGGGGGC---------AGAAG---------AGGA------------AGAT---------CAGCAGCAG------------------------------------------CAG------------------------------------------------GCAGAAGTAGAGGAAGTCGAAAA--------CGACTCC---------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
............................................................................................................................................................................................................AGTG---GCAGTGACAGCGAGGTA......................................................................................................................................................................................................................................................................................................2111.001010000
......CGCGG---------TGG---CGAGGACAGCGACGGCAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
.................................................................................GCGTCATCTCCAGTGCGTAC---AGC...............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000
...............................................................................................................GCAGCGACGCGAGCCGAGGTAAGTGTGA...............................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
.................................................................................................GTAC---AGCGACAGCAGCGACGCGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droWil2
GT----CGTGG---------TGG---AGAGGATAGCGATAGCAG---CACAAACCAG------------------------GCAGCATCTCCAGTGCGTACA---GCCACGACAAGCGCGCGAGCCGAGGTAAGTGTGAATGAGGCAAAT---GAAGA---------------------------------AGAAGATCTGTCCAGTGA---CAGTGGCAGCGAGGAAGAGGACGACGAAGAGGA----------------------------------------------------------------------------------------------AGATGA---------TG------------CAGCAGTTG------AACA---GAAAGAAGTAGTGCCACAGGTACAAGAGGAGGAAAAGGAAAATGAGGATGAAGCTTCAA------------------------------------------------------CATCCTC---ATCAGAG--SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................GATAGCAG---CACAAACCAG------------------------GCAGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000
..........................................AG---CACAAACCAG------------------------GCAGCATCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
........TGG---------TGG---AGAGGATAGCGATAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000
.........GG---------TGG---AGAGGATAGCGATAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
...........................................................................................................................................................................................................................AGCGAGGAAGAGGACGACGA...........................................................................................................................................................................................................................................................................................2011.00100010
...........................................................................................................................................................................................................................................................................................................................................................................................................AAGTAGTGCCACAGGTAC.............................................................................................................1811.00101000
droVir3
GT----GGCGGCCAGGGCGCCAG---CGAGGAGAGCGACAGCAGCAGCAATAATCAGTCGGCGAC------------AGCGGCGGCATCTCCAGTGCGTACAACGACAGCGTCGACAGCGCGAGCCGAGGTAAGTGTGAATGAAACAAAT---GAAGA---------------------------------AGAAGGCGTGGCCAGTGACAACAGTGGCAGCAGCGAGACGGAGAGTGAGACGGG-AA---GTGAGAGCG---------AGGCGGAGGAAGA------------AGAG---------CAGCAGCAG------------------------------------------CA----GCAGCAGCAGGCGCAGTTGGCG---------------------------------------------------CAG-----------------------------------------------------------------GCACC---CGCTGAGGASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................ACAGCGTCGACAGCGCGAGCCGAGTCC......................................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000010000000000000000000000000000000000000000
.............................................................................................GTGCGTACAACGACAGCGTCGACAGCGC.................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000100000000000000000000000000000000000000000000000000000000000
.......................................................AGTCGGCGAC------------AGCGGCGGCATCTCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
...........................................GCAGCAATAATCAGTCGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
......................G---CGAGGAGAGCGACAGCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.....................................................TCAGTCGGCGAC------------AGCGGCGGCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000000000000000000000000000000000000000000000000000000000000
........................................................................................................GACAGCGTCGACAGCGCGAGCCG...........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000100000000000000000000000000000000000000000000000
........................................................GTCGGCGAC------------AGCGGCGGCATCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
.....................AG---CGAGGAGAGCGACAGCAGCAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000100000000000000000000000000000000000000000
..........GCCAGGGCGCCAG---CGAGGAGAGCGACAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000100000000000000000000000000000000000000000
.........................................................TCGGCGAC------------AGCGGCGGCATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000001
......................................................................................................ACGACAGCGTCGACAGCGCGAG..............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
.............................................................CGAC------------AGCGGCGGCATCTCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000100
............................................CAGCAATAATCAGTCGGCGAC------------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
....................................................ATCAGTCGGCGAC------------AGCGGCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................GTGCGTACAACGACAGCGTCGAC......................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................ACGACAGCGTCGACAGCGCGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................AGCGTCGACAGCGCGAGCCGAGTC.......................................................................................................................................................................................................................................................................................................................................................................................................2411.001001000000000000000000000000000000000000000000000000000000000000
........................................GCAGCAGCAATAATCAGTCGGCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................CAGCGTCGACAGCGCGAGCCGA..........................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
.................................................ATAATCAGTCGGCGAC------------AGCGGCGGCATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000000000000000000000000000000000000000000000000000000000000
...................................................AATCAGTCGGCGAC------------AGCGGCGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000100
.....................................................................................................................................................................................................................................................................................GAAGA------------AGAG---------CAGCAGCAG------------------------------------------C...................................................................................................................................................................1930.331000000000000000010000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AAGA------------AGAG---------CAGCAGCAG------------------------------------------CA----..............................................................................................................................................................1950.201000000000000000000000010000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................G---------CAGCAGCAG------------------------------------------CA----GCAGCAGCAGGCGC................................................................................................................................................26120.081000000000000000000000000000000000000000000000000000000000000001
.......................................................................................................................................................................................................................................................................................................................AGCAG------------------------------------------CA----GCAGCAGCAGGCGC................................................................................................................................................21200.051000000000000000000000000000000000000000000000000000000000000010
droMoj3
CG---AGGCGGCCTTGGCGGCAG---CGAGGAGAGCGACAGCAGCAGCAGCAATCAGGCAGCGACAGCAGCAGCGGCAGCGGCGGCATCTCCAGTGCGTACA---GCAACGGCGACAGCGCGAGCCGAGGTAAGTGTGAATGAGACAAATGAAGAAGATGAGGAAGCAGATGAGGAAGAAGAAGCAGAAGCAGAAGAGGAAGCCAGTGACAGCAGTGACAGCAGCGAAGCTGAGACTGGGACCGA-AA---GTGAGAGTG---------AGAGTGAGAGTGAGAC---------AGAGCAACAGCAGCAGCAGCAG------------------------------------------CAGGCAGAA-------------------------------------------------------------------------CA--------ACACCAGCT------------------GCAGCTGCCAGAGC---------------------------AGGTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............TTGGCGGCAG---CGAGGAGAGCGACAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.002000011
...................................................................................GGCATCTCCAGTGCGTACA---GCAACGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
....................................................................AGCAGCGGCAGCGGCGGCAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..............TGGCGGCAG---CGAGGAGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001001000
................................................................................................CGTACA---GCAACGGCGACAGCGCGA...............................................................................................................................................................................................................................................................................................................................................................................................................2411.001000100
.......................................................................AGCGGCAGCGGCGGCATCTCCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..................GGCAG---CGAGGAGAGCGACA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.....................AG---CGAGGAGAGCGACAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000010
...................................................................................................ACA---GCAACGGCGACAGCGCG................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..........................................................................................................................................................................................................................................................................................GAC---------AGAGCAACAGCAGCAGCAGCA...............................................................................................................................................................................................................2430.331000010
........................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCAG------------------------------------------CAGGC...............................................................................................................................................................25100.101000010
droGri2
GT----GGCGGCCAAGGAGCCAGTACAGAGGAGAGCGATGGCAGCAGCAGCAATCAAG---CGAC------------AACAGCATCATCTTCAGTGCGTACAGCAACAACGGCGACAGCACGAGCCGAGGTAAGTGTGAATGAAACAAATGAAGAAGAAGAAGTGGCAGCAGCAGCAGAAAATGATGA---AGTAGGTGTGGCCAGTGACGACAGTGGCAGCAGCGACATTGAGAGCGAAACAGA-AC---AA---------------------------------------------------------------------------------------GAGCG---------TG------------AACAAGTTC------AA---GAGCAAGAGTTGCAACCACAAGCAGTAGCGGTGATAAATGAAGATCA---------------------------------------------------AG--------TGG------ACAAC---GACGACGTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.........................................................................................................ACAACGGCGACAGCACGAGCC............................................................................................................................................................................................................................................................................................................................................................................................................2111.00110
...............................................................AC------------AACAGCATCATCTTCAGTGCGTACA....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00110
...................CCAGTACAGAGGAGAGCGATGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101

Generated: 05/18/2015 at 09:22 AM