ID:

dsi_25594

 Coordinate:

4:269392-269821 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.5 -12.2 -11.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TAATGACTGGCACAACTCCATTAACTGCACTTAGCCACAATTATATTTTGGTAAACGATTAATGTTTCAAAGTACTCCGCATTATACCTCGTACCTATGTATATGCATACATATACTAGTATTTTCAATGACATGCGCACAGAGTCGAGCTTTTCATGCAGACGAGCTCTTATAAAAAAATGTATTCGACGTGTTTTCATTGGCATAAGTAGCTCGATATTAACTTAAGCGACATATTGTTTTAAGAATAAAATAGTTTTGAAGTAAAATAAAGTTATTAAATTCAAAGACTCTAATTTGTAATAACAACACGCAACCTAACAAGACAGTGTATAAACAGAGAGTACTTTAACTATTATACTGAATGTTGTATTAGTTTGGTCTGCTTATTCCTTAATTGGGATCTCCGGCACCTGCAACCTTTGTGACATCAAACTTAACAAAAAATAACGTTATGGACCAAGTTTTATGAGATTTACATATGTTAAACATAAAACAATGTGTACTACTCCTTTAAATAGAAAACCATT
*******************************************************************************************************************************************************...........(((((((((((.....((((...............))))...))))).)))))).......................*************************************************************************************************************************************************************************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553488
RT_0-2 hours eggs
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR1275487
Male larvae		 M053
female body
.......................................................................................................................................................TTTCATGCAGACGAGCTC......................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................AACTTAAGCGACATATTG................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................TGTTTTCATTGGCATAAGTAGCTCGA......................................................................................................................................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................TCTGCTTATTCCTTAATT................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGCAACCTTTGTGACAT................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGACCAAGTTTTATGAGATTTACA.................................................. 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..................................................GTAAACGATTAATGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 16 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................GTAAACGATGAATGTT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ 16 1 4 0.75 3 0 2 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................................................................................................................TATTGAATGTTGAAATAGTTTGG..................................................................................................................................................... 23 3 3 0.33 1 0 0 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGGGAGCTCCGGCGC..................................................................................................................... 19 3 13 0.23 3 0 0 0 0 3 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGGATCTTCGGCGCC.................................................................................................................... 19 3 11 0.18 2 1 0 0 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................AAGTGGGAGCTCCGGCGCCT................................................................................................................... 20 3 7 0.14 1 0 0 0 0 1 0 0 0 0
..................................................................................................................................................................CGAGCTCTTTGAAAAAAA.............................................................................................................................................................................................................................................................................................................................................................. 18 2 9 0.11 1 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................................................................................................................................................................................................................................TAAGTGGGATCTTCGGC....................................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 1 0
TGATGACTGGGACAACGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................TAGTTTTGAAGTTAAA..................................................................................................................................................................................................................................................................... 16 1 17 0.06 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................AATTGGGAGCTTCGGCGCC.................................................................................................................... 19 3 18 0.06 1 0 0 0 0 0 0 0 0 1
..........................................................................................................................................................................................................................ACTAACTTAAGCGAAATA...................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

ATTACTGACCGTGTTGAGGTAATTGACGTGAATCGGTGTTAATATAAAACCATTTGCTAATTACAAAGTTTCATGAGGCGTAATATGGAGCATGGATACATATACGTATGTATATGATCATAAAAGTTACTGTACGCGTGTCTCAGCTCGAAAAGTACGTCTGCTCGAGAATATTTTTTTACATAAGCTGCACAAAAGTAACCGTATTCATCGAGCTATAATTGAATTCGCTGTATAACAAAATTCTTATTTTATCAAAACTTCATTTTATTTCAATAATTTAAGTTTCTGAGATTAAACATTATTGTTGTGCGTTGGATTGTTCTGTCACATATTTGTCTCTCATGAAATTGATAATATGACTTACAACATAATCAAACCAGACGAATAAGGAATTAACCCTAGAGGCCGTGGACGTTGGAAACACTGTAGTTTGAATTGTTTTTTATTGCAATACCTGGTTCAAAATACTCTAAATGTATACAATTTGTATTTTGTTACACATGATGAGGAAATTTATCTTTTGGTAA
***************************************************************************************************************************************************************************************************************************************************************************************************...........(((((((((((.....((((...............))))...))))).)))))).......................******************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 GSM343915
embryo
............................................................TTACATAGTTTCAGAAGGCGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ACACTGTAGTTTGAATTGTTTTTTATT................................................................................ 27 0 1 1.00 1 0 0 0 1 0 0 0 0
................................................................AAAGTTTCCTGAGGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 17 1 3 1.00 3 0 0 0 1 2 0 0 0
.........................................................................................................................................................................................................................................................................................................AGCATTATTGTTGTGCG........................................................................................................................................................................................................................ 17 1 1 1.00 1 0 0 1 0 0 0 0 0
................AGGTAATTGACGTGAATCGGTGTTAAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0
....................................................................................................................................................CGAAAAGTACGTCTGCTCGAGAATATT................................................................................................................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0
.............TTGAGGTAATTGACGTGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1
.........................................................................................................................................GTGTCTCAGCTCGAAAAGTACGTCT................................................................................................................................................................................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0
.....................................................................................................................TCATAAAAGTTACTGTACGCG........................................................................................................................................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0
......................................................................................GGAGCATGGATACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................TATCCATCGAGCTAGAATT................................................................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................ATCGAAAAGTACGTCTGCTCGAGAATA..................................................................................................................................................................................................................................................................................................................................................................... 27 1 1 1.00 1 1 0 0 0 0 0 0 0
......................................................................................GGAGCATGGATACATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 2 0.50 1 0 1 0 0 0 0 0 0
....................................................................................AAGGAGCATGGATACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................. 17 1 2 0.50 1 0 1 0 0 0 0 0 0
...................................................................................GAAGGAGCATGGATACATA............................................................................................................................................................................................................................................................................................................................................................................................................................................ 19 2 2 0.50 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TTCTTGTGCGTTGGA................................................................................................................................................................................................................... 15 1 5 0.40 2 0 0 2 0 0 0 0 0
.....................................................................................AGGAGCATGGATACATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................... 18 2 5 0.40 2 0 2 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGTAGGTTGAATTGTTT...................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................CGTCTACTCTTGAATATTTTTTT.............................................................................................................................................................................................................................................................................................................................................................. 23 3 4 0.25 1 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................................................................................................................CATATGACTTACAAGATGAT........................................................................................................................................................... 20 3 8 0.25 2 0 0 0 0 2 0 0 0
..............................................................ATAAAGTTTCCTGAGGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 1 0 0 0
................................................................AAAGTTTCATGAGGGGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 17 1 6 0.17 1 1 0 0 0 0 0 0 0
................AGGTAATTGACGGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................TCATTTTATTGCAAT............................................................................................................................................................................................................................................................. 15 1 17 0.12 2 0 2 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................TTATTGTTGTGCGTTTGATTGGT.............................................................................................................................................................................................................. 23 2 9 0.11 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................CCCGAGGAATAAGGAAT...................................................................................................................................... 17 2 9 0.11 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTAGGTTGAATTGTT....................................................................................... 19 3 20 0.10 2 0 0 0 0 1 1 0 0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGTAGGTTGAATTGTT....................................................................................... 20 3 20 0.10 2 1 1 0 0 0 0 0 0
......................................................................................GGATCATGGATACATAA........................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 12 0.08 1 0 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................AGTTTCTGATATTAA........................................................................................................................................................................................................................................ 15 1 15 0.07 1 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................................................................................AACCCTGGAGGGCGTGG.................................................................................................................... 17 2 15 0.07 1 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGGTTGAATTGT........................................................................................ 15 1 16 0.06 1 0 1 0 0 0 0 0 0
.......................................................................................GAGCATGGATACATAAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................... 17 2 16 0.06 1 0 1 0 0 0 0 0 0
.............................................................AAAAAAGTTTCCTGAGGCGT................................................................................................................................................................................................................................................................................................................................................................................................................................................................. 20 3 17 0.06 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTATTGCAAGACCT....................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTGTAGGTTGAATTGTTT...................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:269342-269871 - dsi_25594 TAATGACTGGCACAACTCCATTA--ACTG-------CACTTAGCCACAATTATAT----TTTGGTAAACGATT-AATGTTTCAAAGTACTCCGCATTAT------ACCTCGTACCTATGTATATGCATACATATA--------------------CTAGTATTTTC-AA-TGACATGCGCACAGAG----T-------CGAGCTTTTCATGCAGACG-------------AGCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTAAGC------GA-CATATTGTTTTAAGAATAAAA-TA----GTTTTGAAGTAAAAT---------AAAGTT-------------------------------------------------------------------------------------------------------------------------------------ATTAAATTCAAA-----GACT----------------------CTAATTTGTAATAACA------ACACGCAACCTAACAA-----G-ACAGTGTATAAACAGA-GAG----TACTTTAACTAT------TATACTGAATGTTGTATTAGTT-TGGT----CTGCT---------------TA---T-------------T------------CCTTAATTGGGATCTCCGGCACCTGCAACCT-TTGTGACATCAAACTT------AA----------------------------CAAAAAATAACGTTATGGACCAAGTTT--TATG---------------------------------------------------------------------------------------------AGATTTACATATGT--TAAA-CATAAAACAATGTGTAC-------TACT--------------------------------------CCTTTAAATAGAAAACCATT
droSec2 scaffold_30:72758-73298 - TAATGACTGGCACAACTCCATTA--ACTG-------TACTTAGCCACAATTATAT----TTTGGTAAACGATT-AATGTTTCAAAGTACTCCGCATTAT------ACATCGTACCTATGTATATGCATACATATA--------------------CTAGTATTTTC-AA-TGACATGCGCACAGAG----T-------CGAGCTTTTCATGCAGACG-------------AGCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTAAGC------GA-CATATTGTTTTAAGAATAAAA-TA----GTTTTGAAGTAAAAT---------AAAGTT---------------------------------------------------------------------------------------------------------------------------TTTGCCTTTTATTAAATTCAAA-----GACT----------------------CTAATTTGTAATAACA------ACACGCAACCTAACAA-----G-ACAGTGTATAAACAGA-GAG----TACTTTAACTAT------TATACTGAATGTTGTATTAGTT-TTGT----CTGCC---------------TA---T-------------T------------CCTTAATTGGGATCTCCGGCACCTGCAATCTTTTGTGACATCAAACTT------AA----------------------------CAAAAAATAACGTTATGGACCAAGTAT--TATG---------------------------------------------------------------------------------------------AGATTTACATATGT--TAAA-CATAAAACAATGTGTAC-------TACT--------------------------------------CCTTTAAATAGAAAACCATT
dm3 chr4:326079-326613 - TAATGAGTAGCACAACAAAATTG--GCTG-------CACTCAGCCACAATTATAT----TTTGGTAA--------ATGTTTCAAAGTACTCCGTATTAT------AACTCGTACCTATGTATATGCATACATATA--------------------CTAGTATTTTC-AA-TGACATGCGCACAGAG----T-------CGAGCTTTTCATGCAAACG-------------AGCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTAAAC------GA-CATATTGTTTTAGGAATAAAG-TA----GTTTTAAAGTAAAAT---------ACAGTT---------------------------------------------------------------------------------------------------------------------------TTTGCCGTTATTTAAATTCAAAGGAAAGACT----------------------CAAATTTGTAATAACA------ACACGCAATCTAATAA-----G-ACAGTGTAAAAACATA-GAG----TACTGTAACAAT------TATACTGAATGTTGGATTAGTT-TGGT----TTGCT---------------TA---T-------------T------------TCTTAATTGGGATCTCCGGCACCTGCAACCT-TTATGACAGCGAACTA------AA----------------------------CAAATAATAATGTTTTGGACCAAGTTT--TATG---------------------------------------------------------------------------------------------AGATTTACATAAGT--CAAA-CATAAAACAATGTGTACT------------------------------------------------CCTTTAAAAAGAAAGCCATT
droEre2 scaffold_4512:974276-974826 + TAATGACTGGGACAACTCCATGCATATTG-------TACTAAGCCACAATTATATGTAGTTTGGAAAACGGTG-AACGCTTCAAAGTACTTCGCAATAT------ATCTCGTACCTATGTACGT----ACATACA--------------------CTAGTATTTTCAA-CAGACTTGCGCACAGAG----T-------CGAGCTTTTCACGCAATCG-------------AGCTCTTATAA---A-AAAATGTATTCAAAGTGT--TTTCATTGGCA----TAAGTAGTTGCTTGATATTAACTTATAC------GA-CAAATTGTTTTAAGAATAAAG-TA----GTTTTGAAGTAAAAT---------ACAGTG---------------------------------------------------------------------------------------------------------------------------CTTGCCTTTTATTAAATTCGAAGGAAACACT----------------------TAAATTTTTAATAACA------ACACGCAATCTAACAA-----A-ACGGTGTTTAAACAGA-GAG----TACTTCAACTAT------TTTCCTGAATGTTTTATTAGTT-TGTT----CTGCT---------------CA---T-------------T------------ACTCAATTGAGCACTCCGGCAGCTGCAACCA-TTGTGCCACCGAACTAATAACAAA----------------------------CAAATAATAACATTTTGCACCAAATTT--TTCG---------------------------------------------------------------------------------------------AGCTTTATATCAGT--TGAATC----AGCAATGTGTACT------------------------------------------------CTATTAAATAGAAAGCCACT
droYak3 4:359528-360058 - TAATGAATGGGACAACTCCAT-A--ACTGGTAAGCTAACTGAGCCACAATTAAAT----TTAGAAAAACGTTG-AAAGTTTAAAAGTACTCCGCATTAT------ATCTCTTACCTATGTAC------------A--------------------CTAGTATTTTTAA-ATGTCATGCGCAAAGAG----T-------CGAGCTTTTCATGCAAACG-------------AGCTCTTATAA---A-AATATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTATAC------GA-CATATTGTTTTAAGAATAAAG-TA----GTTTTATAGTAAATC---------AGAGTG---------------------------------------------------------------------------------------------------------------------------ATTGGCTTCTATTAAATTTAAAGAAAACAGA----------------------TAAATTTGTAATAACA------ACACGCACTCTAGCAA-----G-ACGGTGTTTTAATAGA-GAG----TACTTAAACTAT------TTTCCTGAAAGTTGTATTAGTT-TGCT----CTGCT---------------CA---T-------------T------------ACTCATTTGAGCACTCCGGCAGCTGCAAACT-TTGTGCAAACGAATTA------CG----------------------------CAAATAA-----TTTTGGACCAAGTTT--T-CG---------------------------------------------------------------------------------------------AGTTTTACATTAGT--TAAA-CATAAAACTATGTGTACT------------------------------------------------GCATTAAATAGAAAGCCATT
droEug1 scf7180000408984:842517-842951 + AT----------------------------------------------------------------------------------------------TAT------ATTTCGCTCTTATGTAAAT-----------------------------------------AAA-TTGACATGCGCACGGAG----T-------CGAGCTTTTAATGCAAATGA-CCT-AA-CA--TGCTCTTATAA---A-AAAATGTATTCGATGTGT--TTTCATTGCCA----TAAGTAG---CTCGTTATAAACTTATAC------AAAAGTATTGAATTAAAAAAATAA-TT---TG-TTTAAACTAAGAG---------AAATTA---------------------------------------------------------------------------------------------------------------------------GTTTTCTT-T-TTCAATTTAAA-AAAAGACC----------------------CAAATACGTCGAAAAAA--T--AATTTCGCCGTTCCAA-----GCGCCGTTTATAAACAGA-TTG----TATTTTAACTGT------TATATTTTAG---ATTTCTCTT-TCCT----TTTTT---------------AG---------------------------------TTTTTAATCACTGCGGCAGATACAATA--C-----------------------AGTGTTTTTGTATTTTGATACATCTTTA-----------------CGCCATATTCTC-------------------------------------------------------------AAG--AAGTGCTCTTTTAA-------TAATATATACA----------------------------------A--------------------T--AATTT--------------TT-ACAA------AAAAATTAAACAAAAC
droBia1 scf7180000301495:75454-75900 - TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAA-TTGTCATGCGCACGTAG----T-------TGAGCTTTTCATGCAAATGA-CAT-GACCC--GTCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCATACATAAGTAG---CTCGATATTAACTTATAC------AAACGTATTGTTTTCAGAATAAAT-TT----GATTAAAGCTAAAAT---------ATATCC---------------------------------------------------------------------------------------------------------------------------TTTTCTTTTTGTTAAATTAAAAGGAAAGACC----------------------TTAATTTGTTACAATAATATATACATGAACTTTTGCAA-----G-ACCGTTAGTAAACAGA-TACCCATAACATTAATTAT------TTTGTTGTA----GAATCAGTT-TGGT----CTCTG---------------AG---G-------------A------------ACCCTTTTGA--------GCAGCTAACACCT-A-----------------------AGTGCGCCTGTATAAATAAATATATAAA-----------------CAA-ATATTTTC------------------------------------------------------------CAAG--AAGTGT---TTAACAAAAAAC----------AAGTCCACATTACTACTAAA-CATA-ACCAATATGCAGT------------------------------------------------TCACTAGATATAAA-TCATC
droTak1 scf7180000414592:5359-5903 - A-----------------------------------------GTCACAATTATAT----TTCAAAAAACGTAAAAAAGTTTAAAAGCACTTCAGGACATGGTTCTCGCTCTCATTCATGTAG--------------------------------------ACT-TCTA-TTGTCATGCGCACGGAG----T-------CGAGCTTTCCATGCAAAAGAACCC-GAACCTAAACTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGCCA----TAAGTAG---CTCGATATTAACTTATAC------GAACGTATTGTTTTAAGAATAAAT-TT----GTTTTGAACTAAAAT---------ATAGCT---------------------------------------------------------------------------------------------------------------------------TTTTATTTTTGTATAATTCAAAGGAAAGACC----------------------TAAACTTGTTACAATAA-CTATACATGCACTTTTGCAA-----G-GCCGTTTACAAGCAGA-TAG----AACCTTAACTAT------TATGTTTTTC---ATATCAGTT-TGGT----CTTTT---------------CA---T-------------A------------ACTCTTTTGAGCACTCCGGCAGCTGCAACCT-T-----------------------AGTGTGCCTGTATTATTAAATACATAAA-----------------CAT-AAATTTTC-------------------------------------------------------------------GGTGC---TCAAAAAAAAAC----------AGTT------------TAAA-AATT-AAAAATGTGTAATTTATCA----GATATACGAAAATTTAACAAACAAAACAAAGTCTAA---------CC-TTTGAAGATT
droEle1 scf7180000491238:1067170-1067592 + T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATGCGCACGGAG----T-------CGAGCTTTTCATGCAAACGA-CCC-GACGC--AGCTCTTATAA---AAAAAATGTATTCGATGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTATAC------GAACGTATTGCTTTAAAAATAAAT-TT----GTTTTGAACTAATAC---------AAAGCT---------------------------------------------------------------------------------------------------------------------------TATTTGCTTTGTATAATTCAAAGGAAAGACT----------------------TCA----TTAATAGTT------ACTTGCACTATTTCAA-----T-ATATTTCATACTCAGC-AAA----TACTTTAACTAA------TATGTTTAAGAT---TTCATTA-TGGTT---CTCTT---------------CG---T-------------T------------------------AGTCCGGCAGCTGCAAACT-T-----------------------AGTGCACATGTTTTTTTAAATGTATAAA-----------------CAA-AGATGTTC------------------------------------------------------------AAAGAAAAGTG---TTTTAA-------AGGAATATGCA-------ATTAGT--TGAATC-GA-AAAAATGTGCAACTTACCA----GATTTAGAAA----------------CAATTCTT----------------------GG
droRho1 scf7180000779201:23937-24388 - GT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTCAA-TTGTCATGCGCACGGAG----T-------CGAGCTTTTCATGC--------CT-GACGC--AGCTCTTATAA---A-AAAATGTATTCGATGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTATAC------GAACATATTGCTTAAAGAATACAT-TT----GTTTTTAGCTAAAATTTAC-----ATAGCT---------------------------------------------------------------------------------------------------------------------------TGTTCGATTTGTACAATTCAAGGGAAAGGCC----------------------TAACATTGTTAAACTACAATTTACAACCAATTTTGCAA-----G-ACCATTTATAAGCGGA-AAA----TACTTT-ACTAT------TATGTGTTAG---ATATCAGTT-TGGTT---CACTG---------------CA---T-------------T------------ACTATTTTGAGGACTCCGGCAGCTACAACCT-C-----------------------AG-ACGCCTGTATTTTTTAAAATATAAACAAAGAAAAGTGTTTT-------------------------------------------------------------------------------------------AC-------AAAAATATGCAGTTATACATTAGT--TGAAACGTAA-AATATGTGCA------------GATATAAAAA----------------CAATTTATAG---------GC-AATCAAAATT
droFic1 scf7180000454086:16147-16632 + TTGT------------------------------------------------------------------------------AAAGCACTCCACTTATT------TCCTCTTATCTGTGTTC---------------------------------------CT-TTAA-TTGCCATGCGCAAAGAG----T-------GGAGCTTTTTATGCAAATCG-TCC-GACGC--AGCTCTTATAA---A-AAAATGTATTCGGTGTGT--TTTCATTGGCA----TAAGTGG---TTTGATATAAACTTATAC------GAACGTATTATCTTAATAAC--------------------TAAAAC---------AT---T---------------------------------------------------------------------------------------------------------------------------TACGTTTTTTGTAAAATTAAACAGAACGACT----------------------TACAT-TGTTAAATTAA-ATATTTAGGTACTTTTGCAA-----G-ACCGTTTACCAACAATAAAGCCAT-------CGTAT------TATGATTAAG---ATAGAATTT-TGGTT---CTAGG---------------TA---T-------------T------------ATTCTATTGACTAGTCCGGCAGCTGTAACTG-G-----------------------TA-AAGCTTGTGTTTTTACATAT-TAAA-----------------TAT-CAAA------------------------------------------------ATTCAAATAATAATAATAAT--ATGTGA---ATAACAACAAA------------ACTGTTTATTAGT--TTAA-TGTA-AAAAAAATGCTATTTACCG----TATTATGTAG----------------CATTATTTAA---------GC---AA-ACCTA
droKik1 scf7180000302373:108963-109371 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATGCGCAAAGAGAATAT-------CAAGCTTTGACAAC--------------ACAGGTCTCTTATAA---ATAAAATGTATTCGATGTCTTATTTCCTCGGCA----TAAGTAG---CTCGATATTAACTTATACACGAACGG-CGTATTGTTTTGAA--TTACAACAATTTGT--------------------------CC--------------------------------------------------------------------------------------------------------------------ATATATTTCCGAATTTTAGTTAATTGAAAGGAAAGACAAACTACCTTCTTATTATAATATTAA----TTAAAAGT------------------------------TCCGTTAAT-CGCAGA-TA----T---C----GTATAAATTATCTGTTAAGG---A-CTCGGGA-TGGTTGCACTTCTCATTACTCT---ATTCGATAG-------------A------------GTATTT--------TTCAGTAGCTGCTTGCA-A-----------------------------------------------------------------------TAATGTA--TATGTGCCTTTTTTATATTAGCGATACAAACATTGAATATCGCGA------------------------------TTAA----------------------------------------------AAGGGGGCAA-------TAAT--------------------------------------AATTTAAATAAACA-TTTAT
droAna3 scaffold_13272:368898-369282 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGCGCACGGAA------------CAAGCTTTTGAGGAACATAA-ACT-TTTTC--TACTCTTATAT---A-AAAATGTATTCAATTTGT--TTTCAGTGGCA----TTGGTAG---TTCCAAGTAAACTTATAC------AAAAAAATTGTTTAAAAAAA-----TT----GTAAAGAACAAAATT--------TTCTCTCACATATACATAAA--------------------------------------------------------------------------------------------------------------AATACGCTTAATAAATTTTT-------AACA----------------------GAAATTAGTTA-AAAAA-GCAT---TTGAATACTCCATGCAAAAA--------------A--------T---T----GTAT--TTTAGCTAACAA-----A-CTCC-----GGTTCGGGCACTCC-------------------------------------------------------------AAACGTTTTCAATCT--AATGATTTTTTACTG------AA------------------------AAAA---CAATTATAGATATAATCC-AGT-TAC---G----------------------------------------GTTCTCATAA------------------------------------------------------TAA--AAAA-TATATATA------A--------------------A--TATAT--------------TTTATAAAC---TGAAAATGTGAAAAATT
droBip1 scf7180000394112:16764-17173 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATGCGCACGGAC------------GAAGCTTTTGGCGAACATAA-ACT-TTTTC--TACTCTTATAT---A-AAAATGTATTCAATATGT--TTTCAGTGGCA----TAAGTAG---TTTCACGGTAACTTATAC------AAAAAACTTGTT-AAAAAATGA-----------TT------AAAATAAAAATGATACTATCATAAAAACAAAAAAAACTTAACAA------------AAAACTT---------AAAAAAAGTAATATATTAAGAAAAATAAGTAAAAATAAAGCT-----------------------------TA----------------------------------------------------------------ATAA-CCAT---TTAGAAAATCGTTACCTAAA--------------G--------C---T----GTAT--ATTAGTTAATAATA---A-TGCGTGCTTGGTTTTATTTCTCCGTACTTTTTAATCCAATAAAGTTTTCCAATAAAATGTAAATAAAAAAACTT--------TTAAGTGACTTTTTGTA--------------------------------------------------------------------------AAGT-TTC-------------------------------------------------------------------------------------------------------------------------GGAAATATGTGTA----------------------TATGT--------------T--------TCATAAAATATAAA-----A
dp5 Unknown_group_460:5148-5228 + CA-------------------------------------------------------------------------------------------------------------TACATATGTATGTACATACATATG--------------------TACTTATGTAT-AT-TGATATTCTCGCCGAC----G-------GCAGACGCCCATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGCTCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_42:118336-118538 + TAGT------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTCAAACGACCATGCGCACGAAG----TTCGTATACGAGCTTTTG-CGCATATTA-TTCCACTCT--GACTCTTATAATAAAAAATATGTATTCAATTTGT--TTCCATTGGCA----TAAGTAG---CTGGCTATCAACATTTAC------TAACATATTGTATTAAAAATTTGT-TA----TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATATGTAA---------------------------------------------------ACTAGACTTATT-GAATT
droWil2 scf2_1100000004729:1279651-1279794 - ATAT--TTGAAAT----------------------------------------------------------------------ATGTATTTAGTA-TAT------ACATCTTACATATGTATATATATACATATATGTAGATATATGTACATATGTATGCATATAT-AG-TGAACTG----------------------------CCCATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGCTAGCAA-----T-T-------------------------------------------------------------------------------------------TTC-----C-----------------------AGATCGCTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAATGTGT-----------------------------------------------------------------------
droVir3 scaffold_12970:4703954-4704031 + TT-------------------------------------------------------------------------------CGCATTCTCCCGCTTTAT------ATAT---------ATAT--------ATATATATATATATACGTATATATACTCGTATATTT-AG-TGGAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCAC
droMoj3 scaffold_6540:2580176-2580513 + ATAAAATTA--------------------------------AGCTATAAATATTT----TAAG----------------------------------------------------------------------------------------------------------------------------------------------------AAAAT-----------------------------------------------------------------------------------------------------------------------------G----GTAATG-------GAACATTAAATAATGTTATAAATATTAAAATCAATATATAACAACCAACACAAAAAATTGCTGAAAACTACGAAATTTAA---TATGAGAAAATTAAATAAATATTGTATTTATATAATTATATGTATATTATATATATTATTATGCTTTATATAATTATAAGGATATTA--------------------------------------------------------------------------------------------TATATGTATTAT------TATGTTTTT-------------------------AT---TATTTT---ATTATATAA-------------AACGTCATTAGAGATATTT--------TATACAAATTA--------------------------------------------------------------TTAATAAAATATTTTACTCATATT--TAT--------------------------------------------------------------------------------------------------------------ATAA-CATATATA------A--------------------T--TATAT--------------TTTAT-----------AATAATTAATATT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAATGACTGGCACAACTCCATTA--ACTG-------CACTTAGCCACAATTATAT----TTTGGTAAACGATT-AATGTTTCAAAGTACTCCGCATTAT------ACCTCGTACCTATGTATATGCATACATATA--------------------CTAGTATTTTC-AA-TGACATGCGCACAGAG----T-------CGAGCTTTTCATGCAGACG-------------AGCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTAAGC------GA-CATATTGTTTTAAGAATAAAA-TA----GTTTTGAAGTAAAAT---------AAAGTT-------------------------------------------------------------------------------------------------------------------------------------ATTAAATTCAAA-----GACT----------------------CTAATTTGTAATAACA------ACACGCAACCTAACAA-----G-ACAGTGTATAAACAGA-GAG----TACTTTAACTAT------TATACTGAATGTTGTATTAGTT-TGGT----CTGCT---------------TA---T-------------T------------CCTTAATTGGGATCTCCGGCACCTGCAACCT-TTGTGACATCAAACTT------AA----------------------------CAAAAAATAACGTTATGGACCAAGTTT--TATG---------------------------------------------------------------------------------------------AGATTTACATATGT--TAAA-CATAAAACAATGTGTAC-------TACT--------------------------------------CCTTTAAATAGAAAACCATTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................................................................................................................................................................................................TTTCATGCAGACG-------------AGCTC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
............................................................................................................................................................................................................................................................................................................AACTTAAGC------GA-CATATTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.....................................................................................................................................................................................................................................................................TGT--TTTCATTGGCA----TAAGTAG---CTCGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----CTGCT---------------TA---T-------------T------------CCTTAATT.....................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTGCAACCT-TTGTGACAT....................................................................................................................................................................................................................................................................................2111.00110000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGGACCAAGTTT--TATG---------------------------------------------------------------------------------------------AGATTTACA..................................................................................................2711.00100000010000000000
...............................................................GTAAACGATT-AATGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1611.00100000000010000000
droSec2
TAATGACTGGCACAACTCCATTA--ACTG-------TACTTAGCCACAATTATAT----TTTGGTAAACGATT-AATGTTTCAAAGTACTCCGCATTAT------ACATCGTACCTATGTATATGCATACATATA--------------------CTAGTATTTTC-AA-TGACATGCGCACAGAG----T-------CGAGCTTTTCATGCAGACG-------------AGCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTAAGC------GA-CATATTGTTTTAAGAATAAAA-TA----GTTTTGAAGTAAAAT---------AAAGTT---------------------------------------------------------------------------------------------------------------------------TTTGCCTTTTATTAAATTCAAA-----GACT----------------------CTAATTTGTAATAACA------ACACGCAACCTAACAA-----G-ACAGTGTATAAACAGA-GAG----TACTTTAACTAT------TATACTGAATGTTGTATTAGTT-TTGT----CTGCC---------------TA---T-------------T------------CCTTAATTGGGATCTCCGGCACCTGCAATCTTTTGTGACATCAAACTT------AA----------------------------CAAAAAATAACGTTATGGACCAAGTAT--TATG---------------------------------------------------------------------------------------------AGATTTACATATGT--TAAA-CATAAAACAATGTGTAC-------TACT--------------------------------------CCTTTAAATAGAAAACCATTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................AAGAATAAAA-TA----GTTTTGAAGTAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001
dm3
TAATGAGTAGCACAACAAAATTG--GCTG-------CACTCAGCCACAATTATAT----TTTGGTAA--------ATGTTTCAAAGTACTCCGTATTAT------AACTCGTACCTATGTATATGCATACATATA--------------------CTAGTATTTTC-AA-TGACATGCGCACAGAG----T-------CGAGCTTTTCATGCAAACG-------------AGCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTAAAC------GA-CATATTGTTTTAGGAATAAAG-TA----GTTTTAAAGTAAAAT---------ACAGTT---------------------------------------------------------------------------------------------------------------------------TTTGCCGTTATTTAAATTCAAAGGAAAGACT----------------------CAAATTTGTAATAACA------ACACGCAATCTAATAA-----G-ACAGTGTAAAAACATA-GAG----TACTGTAACAAT------TATACTGAATGTTGGATTAGTT-TGGT----TTGCT---------------TA---T-------------T------------TCTTAATTGGGATCTCCGGCACCTGCAACCT-TTATGACAGCGAACTA------AA----------------------------CAAATAATAATGTTTTGGACCAAGTTT--TATG---------------------------------------------------------------------------------------------AGATTTACATAAGT--CAAA-CATAAAACAATGTGTACT------------------------------------------------CCTTTAAAAAGAAAGCCATTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTGTAACAAT------TATACTGAATGTTGGA................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGACCAAGTTT--TATG---------------------------------------------------------------------------------------------AGAT.......................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................CGCACAGAG----T-------CGAGCTTTTCATGCAAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT------TATACTGAATGTTGGATT..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
..............................................................................................................................................................................................................TCATGCAAACG-------------AGCTCTTATAA---A-AA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTGGACCAAGTTT--TATG---------------------------------------------------------------------------------------------AGATT......................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAA-----G-ACAGTGTAAAAACATA-GAG----T.................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................................................................................................................................................................................GTATTCGACGTGT--TTTCAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATA-GAG----TACTGTAACAAT------TA..............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................TAAGTAG---CTCGATATTAACTTAAAC------GA-C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAAAGGAAAGACT----------------------CAAATTTGTAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAACATA-GAG----TACTGTAACA........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................ATGCGCACAGAG----T-------CGAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
TAATGAGTAGCACAACAAAATTG--GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................TTC-AA-TGACATGCGCACAGAG----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACATAAGT--CAAA-CATAAAAC..............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......TAGCACAACAAAATTG--GCCT-------T..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
droEre2
TAATGACTGGGACAACTCCATGCATATTG-------TACTAAGCCACAATTATATGTAGTTTGGAAAACGGTG-AACGCTTCAAAGTACTTCGCAATAT------ATCTCGTACCTATGTACGT----ACATACA--------------------CTAGTATTTTCAA-CAGACTTGCGCACAGAG----T-------CGAGCTTTTCACGCAATCG-------------AGCTCTTATAA---A-AAAATGTATTCAAAGTGT--TTTCATTGGCA----TAAGTAGTTGCTTGATATTAACTTATAC------GA-CAAATTGTTTTAAGAATAAAG-TA----GTTTTGAAGTAAAAT---------ACAGTG---------------------------------------------------------------------------------------------------------------------------CTTGCCTTTTATTAAATTCGAAGGAAACACT----------------------TAAATTTTTAATAACA------ACACGCAATCTAACAA-----A-ACGGTGTTTAAACAGA-GAG----TACTTCAACTAT------TTTCCTGAATGTTTTATTAGTT-TGTT----CTGCT---------------CA---T-------------T------------ACTCAATTGAGCACTCCGGCAGCTGCAACCA-TTGTGCCACCGAACTAATAACAAA----------------------------CAAATAATAACATTTTGCACCAAATTT--TTCG---------------------------------------------------------------------------------------------AGCTTTATATCAGT--TGAATC----AGCAATGTGTACT------------------------------------------------CTATTAAATAGAAAGCCACTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........................................................................................CGCAATAT------ATCTCGTACCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
................................................................................................................................................................................................................................................................................................TTGCTTGATATTAACTTATAC------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAATC----AGCAATGTGTACT------------------------------------------------CTA.................2111.0011000000
droYak3
TAATGAATGGGACAACTCCAT-A--ACTGGTAAGCTAACTGAGCCACAATTAAAT----TTAGAAAAACGTTG-AAAGTTTAAAAGTACTCCGCATTAT------ATCTCTTACCTATGTAC------------A--------------------CTAGTATTTTTAA-ATGTCATGCGCAAAGAG----T-------CGAGCTTTTCATGCAAACG-------------AGCTCTTATAA---A-AATATGTATTCGACGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTATAC------GA-CATATTGTTTTAAGAATAAAG-TA----GTTTTATAGTAAATC---------AGAGTG---------------------------------------------------------------------------------------------------------------------------ATTGGCTTCTATTAAATTTAAAGAAAACAGA----------------------TAAATTTGTAATAACA------ACACGCACTCTAGCAA-----G-ACGGTGTTTTAATAGA-GAG----TACTTAAACTAT------TTTCCTGAAAGTTGTATTAGTT-TGCT----CTGCT---------------CA---T-------------T------------ACTCATTTGAGCACTCCGGCAGCTGCAAACT-TTGTGCAAACGAATTA------CG----------------------------CAAATAA-----TTTTGGACCAAGTTT--T-CG---------------------------------------------------------------------------------------------AGTTTTACATTAGT--TAAA-CATAAAACTATGTGTACT------------------------------------------------GCATTAAATAGAAAGCCATTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGGCAGCTGCAAACT-TTGT.........................................................................................................................................................................................................................................................................................2011.00110000000000
.....................................................................................................................................................................TAA-ATGTCATGCGCAAAGAG----T-------CGAGCT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGGACCAAGTTT--T-CG---------------------------------------------------------------------------------------------AG.........................................................................................................1911.00110000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGGCAGCTGCAAACT-TTGT.........................................................................................................................................................................................................................................................................................2211.00110000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGGCAGCTGCAAACT-TTGT.........................................................................................................................................................................................................................................................................................2111.00110000000000
droEug1
AT----------------------------------------------------------------------------------------------TAT------ATTTCGCTCTTATGTAAAT-----------------------------------------AAA-TTGACATGCGCACGGAG----T-------CGAGCTTTTAATGCAAATGA-CCT-AA-CA--TGCTCTTATAA---A-AAAATGTATTCGATGTGT--TTTCATTGCCA----TAAGTAG---CTCGTTATAAACTTATAC------AAAAGTATTGAATTAAAAAAATAA-TT---TG-TTTAAACTAAGAG---------AAATTA---------------------------------------------------------------------------------------------------------------------------GTTTTCTT-T-TTCAATTTAAA-AAAAGACC----------------------CAAATACGTCGAAAAAA--T--AATTTCGCCGTTCCAA-----GCGCCGTTTATAAACAGA-TTG----TATTTTAACTGT------TATATTTTAG---ATTTCTCTT-TCCT----TTTTT---------------AG---------------------------------TTTTTAATCACTGCGGCAGATACAATA--C-----------------------AGTGTTTTTGTATTTTGATACATCTTTA-----------------CGCCATATTCTC-------------------------------------------------------------AAG--AAGTGCTCTTTTAA-------TAATATATACA----------------------------------A--------------------T--AATTT--------------TT-ACAA------AAAAATTAAACAAAACSizeHit CountTotal NormTotal
No Reads
droBia1
TT-----------------------------------------------------------------------------------------------------------------------------------------------------------------TTCAA-TTGTCATGCGCACGTAG----T-------TGAGCTTTTCATGCAAATGA-CAT-GACCC--GTCTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGGCATACATAAGTAG---CTCGATATTAACTTATAC------AAACGTATTGTTTTCAGAATAAAT-TT----GATTAAAGCTAAAAT---------ATATCC---------------------------------------------------------------------------------------------------------------------------TTTTCTTTTTGTTAAATTAAAAGGAAAGACC----------------------TTAATTTGTTACAATAATATATACATGAACTTTTGCAA-----G-ACCGTTAGTAAACAGA-TACCCATAACATTAATTAT------TTTGTTGTA----GAATCAGTT-TGGT----CTCTG---------------AG---G-------------A------------ACCCTTTTGA--------GCAGCTAACACCT-A-----------------------AGTGCGCCTGTATAAATAAATATATAAA-----------------CAA-ATATTTTC------------------------------------------------------------CAAG--AAGTGT---TTAACAAAAAAC----------AAGTCCACATTACTACTAAA-CATA-ACCAATATGCAGT------------------------------------------------TCACTAGATATAAA-TCATCSizeHit CountTotal NormTotal
No Reads
droTak1
A-----------------------------------------GTCACAATTATAT----TTCAAAAAACGTAAAAAAGTTTAAAAGCACTTCAGGACATGGTTCTCGCTCTCATTCATGTAG--------------------------------------ACT-TCTA-TTGTCATGCGCACGGAG----T-------CGAGCTTTCCATGCAAAAGAACCC-GAACCTAAACTCTTATAA---A-AAAATGTATTCGACGTGT--TTTCATTGCCA----TAAGTAG---CTCGATATTAACTTATAC------GAACGTATTGTTTTAAGAATAAAT-TT----GTTTTGAACTAAAAT---------ATAGCT---------------------------------------------------------------------------------------------------------------------------TTTTATTTTTGTATAATTCAAAGGAAAGACC----------------------TAAACTTGTTACAATAA-CTATACATGCACTTTTGCAA-----G-GCCGTTTACAAGCAGA-TAG----AACCTTAACTAT------TATGTTTTTC---ATATCAGTT-TGGT----CTTTT---------------CA---T-------------A------------ACTCTTTTGAGCACTCCGGCAGCTGCAACCT-T-----------------------AGTGTGCCTGTATTATTAAATACATAAA-----------------CAT-AAATTTTC-------------------------------------------------------------------GGTGC---TCAAAAAAAAAC----------AGTT------------TAAA-AATT-AAAAATGTGTAATTTATCA----GATATACGAAAATTTAACAAACAAAACAAAGTCTAA---------CC-TTTGAAGATTSizeHit CountTotal NormTotal
No Reads
droEle1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATGCGCACGGAG----T-------CGAGCTTTTCATGCAAACGA-CCC-GACGC--AGCTCTTATAA---AAAAAATGTATTCGATGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTATAC------GAACGTATTGCTTTAAAAATAAAT-TT----GTTTTGAACTAATAC---------AAAGCT---------------------------------------------------------------------------------------------------------------------------TATTTGCTTTGTATAATTCAAAGGAAAGACT----------------------TCA----TTAATAGTT------ACTTGCACTATTTCAA-----T-ATATTTCATACTCAGC-AAA----TACTTTAACTAA------TATGTTTAAGAT---TTCATTA-TGGTT---CTCTT---------------CG---T-------------T------------------------AGTCCGGCAGCTGCAAACT-T-----------------------AGTGCACATGTTTTTTTAAATGTATAAA-----------------CAA-AGATGTTC------------------------------------------------------------AAAGAAAAGTG---TTTTAA-------AGGAATATGCA-------ATTAGT--TGAATC-GA-AAAAATGTGCAACTTACCA----GATTTAGAAA----------------CAATTCTT----------------------GGSizeHit CountTotal NormTotal
No Reads
droRho1
GT--------------------------------------------------------------------------------------------------------------------------------------------------------------TTTGTCAA-TTGTCATGCGCACGGAG----T-------CGAGCTTTTCATGC--------CT-GACGC--AGCTCTTATAA---A-AAAATGTATTCGATGTGT--TTTCATTGGCA----TAAGTAG---CTCGATATTAACTTATAC------GAACATATTGCTTAAAGAATACAT-TT----GTTTTTAGCTAAAATTTAC-----ATAGCT---------------------------------------------------------------------------------------------------------------------------TGTTCGATTTGTACAATTCAAGGGAAAGGCC----------------------TAACATTGTTAAACTACAATTTACAACCAATTTTGCAA-----G-ACCATTTATAAGCGGA-AAA----TACTTT-ACTAT------TATGTGTTAG---ATATCAGTT-TGGTT---CACTG---------------CA---T-------------T------------ACTATTTTGAGGACTCCGGCAGCTACAACCT-C-----------------------AG-ACGCCTGTATTTTTTAAAATATAAACAAAGAAAAGTGTTTT-------------------------------------------------------------------------------------------AC-------AAAAATATGCAGTTATACATTAGT--TGAAACGTAA-AATATGTGCA------------GATATAAAAA----------------CAATTTATAG---------GC-AATCAAAATTSizeHit CountTotal NormTotal
No Reads
droFic1
TTGT------------------------------------------------------------------------------AAAGCACTCCACTTATT------TCCTCTTATCTGTGTTC---------------------------------------CT-TTAA-TTGCCATGCGCAAAGAG----T-------GGAGCTTTTTATGCAAATCG-TCC-GACGC--AGCTCTTATAA---A-AAAATGTATTCGGTGTGT--TTTCATTGGCA----TAAGTGG---TTTGATATAAACTTATAC------GAACGTATTATCTTAATAAC--------------------TAAAAC---------AT---T---------------------------------------------------------------------------------------------------------------------------TACGTTTTTTGTAAAATTAAACAGAACGACT----------------------TACAT-TGTTAAATTAA-ATATTTAGGTACTTTTGCAA-----G-ACCGTTTACCAACAATAAAGCCAT-------CGTAT------TATGATTAAG---ATAGAATTT-TGGTT---CTAGG---------------TA---T-------------T------------ATTCTATTGACTAGTCCGGCAGCTGTAACTG-G-----------------------TA-AAGCTTGTGTTTTTACATAT-TAAA-----------------TAT-CAAA------------------------------------------------ATTCAAATAATAATAATAAT--ATGTGA---ATAACAACAAA------------ACTGTTTATTAGT--TTAA-TGTA-AAAAAAATGCTATTTACCG----TATTATGTAG----------------CATTATTTAA---------GC---AA-ACCTASizeHit CountTotal NormTotal
No Reads
droKik1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATGCGCAAAGAGAATAT-------CAAGCTTTGACAAC--------------ACAGGTCTCTTATAA---ATAAAATGTATTCGATGTCTTATTTCCTCGGCA----TAAGTAG---CTCGATATTAACTTATACACGAACGG-CGTATTGTTTTGAA--TTACAACAATTTGT--------------------------CC--------------------------------------------------------------------------------------------------------------------ATATATTTCCGAATTTTAGTTAATTGAAAGGAAAGACAAACTACCTTCTTATTATAATATTAA----TTAAAAGT------------------------------TCCGTTAAT-CGCAGA-TA----T---C----GTATAAATTATCTGTTAAGG---A-CTCGGGA-TGGTTGCACTTCTCATTACTCT---ATTCGATAG-------------A------------GTATTT--------TTCAGTAGCTGCTTGCA-A-----------------------------------------------------------------------TAATGTA--TATGTGCCTTTTTTATATTAGCGATACAAACATTGAATATCGCGA------------------------------TTAA----------------------------------------------AAGGGGGCAA-------TAAT--------------------------------------AATTTAAATAAACA-TTTATSizeHit CountTotal NormTotal
No Reads
droAna3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATGCGCACGGAA------------CAAGCTTTTGAGGAACATAA-ACT-TTTTC--TACTCTTATAT---A-AAAATGTATTCAATTTGT--TTTCAGTGGCA----TTGGTAG---TTCCAAGTAAACTTATAC------AAAAAAATTGTTTAAAAAAA-----TT----GTAAAGAACAAAATT--------TTCTCTCACATATACATAAA--------------------------------------------------------------------------------------------------------------AATACGCTTAATAAATTTTT-------AACA----------------------GAAATTAGTTA-AAAAA-GCAT---TTGAATACTCCATGCAAAAA--------------A--------T---T----GTAT--TTTAGCTAACAA-----A-CTCC-----GGTTCGGGCACTCC-------------------------------------------------------------AAACGTTTTCAATCT--AATGATTTTTTACTG------AA------------------------AAAA---CAATTATAGATATAATCC-AGT-TAC---G----------------------------------------GTTCTCATAA------------------------------------------------------TAA--AAAA-TATATATA------A--------------------A--TATAT--------------TTTATAAAC---TGAAAATGTGAAAAATTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCATGCGCACGGAC------------GAAGCTTTTGGCGAACATAA-ACT-TTTTC--TACTCTTATAT---A-AAAATGTATTCAATATGT--TTTCAGTGGCA----TAAGTAG---TTTCACGGTAACTTATAC------AAAAAACTTGTT-AAAAAATGA-----------TT------AAAATAAAAATGATACTATCATAAAAACAAAAAAAACTTAACAA------------AAAACTT---------AAAAAAAGTAATATATTAAGAAAAATAAGTAAAAATAAAGCT-----------------------------TA----------------------------------------------------------------ATAA-CCAT---TTAGAAAATCGTTACCTAAA--------------G--------C---T----GTAT--ATTAGTTAATAATA---A-TGCGTGCTTGGTTTTATTTCTCCGTACTTTTTAATCCAATAAAGTTTTCCAATAAAATGTAAATAAAAAAACTT--------TTAAGTGACTTTTTGTA--------------------------------------------------------------------------AAGT-TTC-------------------------------------------------------------------------------------------------------------------------GGAAATATGTGTA----------------------TATGT--------------T--------TCATAAAATATAAA-----ASizeHit CountTotal NormTotal
No Reads
dp5
CA-------------------------------------------------------------------------------------------------------------TACATATGTATGTACATACATATG--------------------TACTTATGTAT-AT-TGATATTCTCGCCGAC----G-------GCAGACGCCCATGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCCGCTCTCT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TAGT------------------------------------------------------------------------------------------------------------------------------------------------------------TC-TTCAAACGACCATGCGCACGAAG----TTCGTATACGAGCTTTTG-CGCATATTA-TTCCACTCT--GACTCTTATAATAAAAAATATGTATTCAATTTGT--TTCCATTGGCA----TAAGTAG---CTGGCTATCAACATTTAC------TAACATATTGTATTAAAAATTTGT-TA----TTTT--------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTAAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAATATGTAA---------------------------------------------------ACTAGACTTATT-GAATTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ATAT--TTGAAAT----------------------------------------------------------------------ATGTATTTAGTA-TAT------ACATCTTACATATGTATATATATACATATATGTAGATATATGTACATATGTATGCATATAT-AG-TGAACTG----------------------------CCCATTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTAGCTAGCAA-----T-T-------------------------------------------------------------------------------------------TTC-----C-----------------------AGATCGCTTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAAATGTGT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TT-------------------------------------------------------------------------------CGCATTCTCCCGCTTTAT------ATAT---------ATAT--------ATATATATATATATACGTATATATACTCGTATATTT-AG-TGGAAAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................ATATATATATATACGTATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.102002000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATATATATATATACGTATATAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24190.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATATATATATATACGTATAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................ATATATATATATATACGTAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000000000000000000000000000000000000000000000000000000000000
droMoj3
ATAAAATTA--------------------------------AGCTATAAATATTT----TAAG----------------------------------------------------------------------------------------------------------------------------------------------------AAAAT-----------------------------------------------------------------------------------------------------------------------------G----GTAATG-------GAACATTAAATAATGTTATAAATATTAAAATCAATATATAACAACCAACACAAAAAATTGCTGAAAACTACGAAATTTAA---TATGAGAAAATTAAATAAATATTGTATTTATATAATTATATGTATATTATATATATTATTATGCTTTATATAATTATAAGGATATTA--------------------------------------------------------------------------------------------TATATGTATTAT------TATGTTTTT-------------------------AT---TATTTT---ATTATATAA-------------AACGTCATTAGAGATATTT--------TATACAAATTA--------------------------------------------------------------TTAATAAAATATTTTACTCATATT--TAT--------------------------------------------------------------------------------------------------------------ATAA-CATATATA------A--------------------T--TATAT--------------TTTAT-----------AATAATTAATATTSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/18/2015 at 02:35 PM