ID:

dsi_25588

 Coordinate:

3r:10498653-10498792 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-17.1 -17.1 -16.9 -16.9

Flybase annnotation

exon [3r_10498471_10498652_+]; CDS [3r_10498471_10498652_+]; CDS [3r_10498793_10500197_+]; exon [3r_10498793_10500197_+]; intron [3r_10498653_10498792_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------##################################################
CTCATCGGGAACGTGCTGCACTCCAAGGACATCAAGGGCGACATCAAAAAGTAAGCTTCTACCGATGACATCTGACTAAGCCTTGAGTTTTACAACCACTTTTCGAAATGTTGAAAATGATTTTCAGCCATTGAAATCACAGTTGGTTTCTGTATCTGTAAATAATAATCGATCTTTATTCTTTAAACAGACGCCAAATGGAAGAGCAGTTTGAGATGGTGCAGGAGTGCAACGACTTAC
**************************************************.....((................((.((((..((((..((((((((((((((((((...(((((((.....)))))))..))))))....))).))).........))))))......))))..)))).)).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 O002
Head
 GSM343915
embryo
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body
..CATCGGGAACGTGCTGCACTCCAAGGA................................................................................................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0
...................................................................................................................................................................................................................TGAGATGGTGCAGGAGTGCAACGA..... 24 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................GATCTTTATTCTTTAAAC.................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................TCTGACTTAGCATTGAGTTT...................................................................................................................................................... 20 2 3 0.33 1 0 0 0 1 0 0 0
......................................................................................................................................................TATTTCTGTAAATAATAAGCGA.................................................................... 22 3 4 0.25 1 0 0 0 0 1 0 0
...............................................................GATGACGTCTGACTAACC............................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 1 0
...............................................................................................................................................................................................CGCAAAGTAGAAGAGCAGTTT............................ 21 3 4 0.25 1 0 0 0 1 0 0 0
......................................................................................................................................................TATTTCTGTAAATAATAAGCG..................................................................... 21 3 12 0.08 1 0 0 0 0 1 0 0
.....................ATCAAGGACATCAAGGGC......................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 1
.........................AGGACATCGAGGGCG........................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0

Anti-sense strand reads

GAGTAGCCCTTGCACGACGTGAGGTTCCTGTAGTTCCCGCTGTAGTTTTTCATTCGAAGATGGCTACTGTAGACTGATTCGGAACTCAAAATGTTGGTGAAAAGCTTTACAACTTTTACTAAAAGTCGGTAACTTTAGTGTCAACCAAAGACATAGACATTTATTATTAGCTAGAAATAAGAAATTTGTCTGCGGTTTACCTTCTCGTCAAACTCTACCACGTCCTCACGTTGCTGAATG
**************************************************.....((................((.((((..((((..((((((((((((((((((...(((((((.....)))))))..))))))....))).))).........))))))......))))..)))).)).......))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 M023
head
....................................................................................................................................CGTTAGTGCCAACCAAAGA......................................................................................... 19 2 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................................................................GTTAGTGCCAACCAAAGA......................................................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0
.......................................................................................AAAATGTTGGTGAAACTCTT..................................................................................................................................... 20 2 3 0.33 1 0 1 0 0 0 0 0
....................................................................................................................................CGTTAGGGCCAACCAAAGA......................................................................................... 19 3 20 0.30 6 2 0 1 0 0 2 1
......................................................................................................AGTTTTACAACTTTTACTATGA.................................................................................................................... 22 3 4 0.25 1 0 1 0 0 0 0 0
........TTTGCACAACGTGAGGTTTCT................................................................................................................................................................................................................... 21 3 4 0.25 1 0 0 0 1 0 0 0
........................................................................ACTGTTTCGGATCTCAAA...................................................................................................................................................... 18 2 9 0.22 2 0 0 2 0 0 0 0
...............................................................................CGGATCTCAAAATGT.................................................................................................................................................. 15 1 8 0.13 1 0 0 0 0 1 0 0
..............CGACGTGAGGTTCATGT................................................................................................................................................................................................................. 17 1 9 0.11 1 0 0 1 0 0 0 0
....................................................................................................AAAGCTTTCCAACTTTT........................................................................................................................... 17 1 10 0.10 1 0 1 0 0 0 0 0
......................................................................................CAAAGTGTTGGTGAAA.......................................................................................................................................... 16 1 10 0.10 1 0 0 1 0 0 0 0
..................................................................................................................ATAACTAAAAGTCGGTAAC........................................................................................................... 19 2 11 0.09 1 0 0 1 0 0 0 0
.............................................................GGCTACCGAAGACTGAT.................................................................................................................................................................. 17 2 12 0.08 1 0 1 0 0 0 0 0
.......................................................................................................................................TAGTGCCAACCAAAGAAAA...................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0
..................................................................................................................................................AAAGAGATAGTCATTTAATA.......................................................................... 20 3 20 0.05 1 0 0 0 0 1 0 0

Generated: 04/24/2015 at 10:43 AM