ID:

dsi_25552

Coordinate:

3r:4451411-4451560 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-23.7	-23.6	-23.3	-23.2

Flybase annnotation

exon [3r_4451262_4451410_+]; CDS [3r_4451262_4451410_+]; intron [3r_4451411_4452200_+]

No Repeatable elements found

mature

star

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAGATGTGCCTCCAGTGTGACGTGACCAAAAAGCAGAAGGAGGAATTTACGTGAGTGTCGCTTCCATTGCCCCGCCAATTCCCAATTGACTCTTGACGTGACCCCTTTCCCGGGAATGTTTACACTATCATAAGCAATCTCAAATTCGCAATCGTCACAGATTCCAAGAATATTTGATCAGTTTAACTTTAGATGGTCAGTTTCTTCTAAAATGGTATTTACTGTACCATTGTAACAAATTTCACTCTTA ************************************************..........((.(((((........((((..(((.....(((((..(((((.........((((.((((((........)))))).))))............)))))......)))))....)))...))))........)))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR902008 ovaries	M053 female body	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
............................AAGAGCAGGAGGAGGAATTT..........................................................................................................................................................................................................	20	2	3	4.67	14	14	0	0	0	0	0
........................................................................................................TTTTCCCGGGAATGAGTACACT............................................................................................................................	22	3	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................ATTCCAAGAATATTTG..........................................................................	16	0	3	0.33	1	0	1	0	0	0	0
...............................AGCAGGAGGAGGAATTT..........................................................................................................................................................................................................	17	1	4	0.25	1	1	0	0	0	0	0
............................AAGAGCAGGAGGAGGAATT...........................................................................................................................................................................................................	19	2	16	0.25	4	4	0	0	0	0	0
..........................................................................................................................................................................TATTTGATCAGTGTAATGTTA...........................................................	21	3	4	0.25	1	0	0	1	0	0	0
...........................GAAGAGCAGGAGGAGGAATTT..........................................................................................................................................................................................................	21	3	20	0.15	3	3	0	0	0	0	0
.........................................................................................................................................................................ATACTTGATCAGTTTGACGT.............................................................	20	3	9	0.11	1	0	0	0	1	0	0
..............................................................................................................................................................................TGAACAGTTTAAATTTAGA.........................................................	19	2	11	0.09	1	0	0	0	0	1	0
...............................AGCAGGAGGAGGAATT...........................................................................................................................................................................................................	16	1	19	0.05	1	1	0	0	0	0	0
...........................................................................................................TCCCGGGAATGGTTGC...............................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................GTCACAGGTTCGAAGA.................................................................................	16	2	20	0.05	1	0	0	0	0	0	1
............................AAGAGCAGGAGGAGGAAATTA.........................................................................................................................................................................................................	21	3	20	0.05	1	1	0	0	0	0	0

Anti-sense strand reads

TTCTACACGGAGGTCACACTGCACTGGTTTTTCGTCTTCCTCCTTAAATGCACTCACAGCGAAGGTAACGGGGCGGTTAAGGGTTAACTGAGAACTGCACTGGGGAAAGGGCCCTTACAAATGTGATAGTATTCGTTAGAGTTTAAGCGTTAGCAGTGTCTAAGGTTCTTATAAACTAGTCAAATTGAAATCTACCAGTCAAAGAAGATTTTACCATAAATGACATGGTAACATTGTTTAAAGTGAGAAT ************************************************..........((.(((((........((((..(((.....(((((..(((((.........((((.((((((........)))))).))))............)))))......)))))....)))...))))........)))))..))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	M023 head	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries
.................................................................................................................................................................................................................................TGGTAGCATTGTTTAAAGTCAGAGT	25	3	1	1.00	1	0	0	1	0	0	0	0	0
....................................................................................................................................................................................................AGTCGAAGGAGATTTTACCA..................................	20	2	1	1.00	1	1	0	0	0	0	0	0	0
................................................................................................................................................................................................TTCTAGTCAAAGGAGATTTTAC....................................	22	3	1	1.00	1	0	1	0	0	0	0	0	0
.......................................................................................................................................................AGAAGTGTTTTAGGTTCTTA...............................................................................	20	3	12	0.50	6	0	0	1	3	1	1	0	0
..................................................................................................................................................................................................CTAGTCAAAGGAGATTTTAC....................................	20	2	2	0.50	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................CTAGTCAAAGGAGATTTTA.....................................	19	2	3	0.33	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................TCTAGTCAAAGGAGATTTTAC....................................	21	3	6	0.17	1	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTAGTCGAAGGAGATTTTA.....................................	19	3	20	0.10	2	2	0	0	0	0	0	0	0
........................................................................................................................................................GAAGTGTTTTAGGTTCTTA...............................................................................	19	3	20	0.10	2	0	0	0	2	0	0	0	0
...................................................................................................................................................CGGTAGCAGAGTCGAAGGTT...................................................................................	20	3	12	0.08	1	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................AGGAAATTTTACCACAAATG............................	20	3	15	0.07	1	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................CCAGTCTAAGAAGGTTTTG.....................................	19	3	17	0.06	1	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................GAAATCTACAAGTCA.................................................	15	1	20	0.05	1	0	0	0	0	0	0	0	1
..........................................................................................................................................................AGTGTTTTAGGTTCTTA...............................................................................	17	2	20	0.05	1	0	0	1	0	0	0	0	0

Generated: 04/24/2015 at 07:54 AM