ID:

dsi_25547

Coordinate:

3l:11473399-11473527 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3l_11473305_11473398_+]; exon [3l_11473528_11475576_+]; exon [3l_11473305_11473398_+]; CDS [3l_11473528_11475407_+]; intron [3l_11473399_11473527_+]; Antisense to intron [3l_11471601_11475771_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------################################################## CAATCTCGAGGAATTCGAAAGCCCATGGCCATCGGCATCAGCAACGACAGGTGAAGATAGCAAATGGAAACCATTCAATTGAAACTACAGTCGAAATACTTTGACTAGAGATAGATATTGAATGGTTCGGCGACCTTTCACTTTGGAAACTATTTTTTAAACAAAATCCCACCCTGCAGGAAACAACTTCATCAGTGGCAGTGTTCCAAATCTGCAACTATATGGTGCC ************************************************..(((((((((((((((((((((((((((.....((..(((((((....)))))))..))......))))))))))).........)))).))))....))))))))......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	M024 male body	O001 Testis	SRR553486 Makindu_3 day-old ovaries	SRR553485 Chicharo_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs
....................................................................................................................ATTGAATGGTCCGGTGA................................................................................................	17	2	10	2.90	29	15	0	0	9	3	0	2
.............................CATCGGCATCAGCAACGACAGG..................................................................................................................................................................................	22	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................AAACAACTTCATCAGTGGCAG............................	21	0	1	1.00	1	0	0	1	0	0	0	0
.........................TGGCCATCGGCATCAGCAACGACAGGA.................................................................................................................................................................................	27	1	1	1.00	1	1	0	0	0	0	0	0
..............................................................................TTGAAACGACAGTCGATA.....................................................................................................................................	18	2	4	0.25	1	0	1	0	0	0	0	0
......................................................................................................................TGAATGGTTCGGTGA................................................................................................	15	1	7	0.14	1	1	0	0	0	0	0	0
..............................................................................................................................TCGGCGACCTTTCGTTTT.....................................................................................	18	2	9	0.11	1	0	0	0	0	0	1	0
...................................AATCAGCAACGACTGGT.................................................................................................................................................................................	17	2	17	0.06	1	0	0	0	0	0	1	0
..............................................................................................................ATAGATATTGAATGTT.......................................................................................................	16	1	20	0.05	1	0	0	0	0	0	1	0
....................................ATCAGCAACGACTGTT.................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0

Anti-sense strand reads

GTTAGAGCTCCTTAAGCTTTCGGGTACCGGTAGCCGTAGTCGTTGCTGTCCACTTCTATCGTTTACCTTTGGTAAGTTAACTTTGATGTCAGCTTTATGAAACTGATCTCTATCTATAACTTACCAAGCCGCTGGAAAGTGAAACCTTTGATAAAAAATTTGTTTTAGGGTGGGACGTCCTTTGTTGAAGTAGTCACCGTCACAAGGTTTAGACGTTGATATACCACGG ************************************************..(((((((((((((((((((((((((((.....((..(((((((....)))))))..))......))))))))))).........)))).))))....))))))))......................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo	SRR902008 ovaries	M024 male body	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR902009 testis
.........................................................................................................................................................................................................ACAAGGTTTAGACGTCGATGT.......	21	2	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................ATTATCTCTATCTATAAGTTACC........................................................................................................	23	3	2	0.50	1	0	1	0	0	0	0	0
..........................................................................................................................................................AAAATTTGTTTTAGGGTGTT.......................................................	20	2	4	0.25	1	0	0	1	0	0	0	0
.............................GTAGCTGAAGTCGTGGCTGTC...................................................................................................................................................................................	21	3	8	0.13	1	0	0	0	1	0	0	0
....................................TAGTCGTTGCTGACAA.................................................................................................................................................................................	16	2	20	0.10	2	0	0	0	0	2	0	0
...............................................................................................................................................................TTCTTTTCGGGCGGGACGTC..................................................	20	3	14	0.07	1	1	0	0	0	0	0	0
............................................................................................................................................................................................AGTAGTCACAGTCAC..........................	15	1	20	0.05	1	0	0	0	0	0	1	0
.................TTTTGGGTACCGCTAGCCT.................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:00 AM