ID:

dsi_25541

Coordinate:

3l:8064261-8064473 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-29.2	-29.0	-29.0

Flybase annnotation

intergenic

No Repeatable elements found

mature

star

Sense Strand Reads

TCAACTGGCTGCACGACGGCAAACCCATACTCAGGGACAATCGGGTTGAGGTGAGCAGACAACCCCATATCATTCATAATTTAATCGGCTTTTAAAATCTCAAATTTTTATGATTTTATGGTTTAAAATCTTAATTTTATTCCTACAACGTTGCCAGTGAATTAAGATATTATTTTTAATGATGGCCAACCTGTATTATCACCAATTATAAATACGTTTTAATCGTAATGTTAATAAATATTTATTGCTTATCCTTTAATTAGATACTCACCGATCCACCGCGACTGATAATTAAAAAAGTGCAAAAGGAAGA ************************************************((((((((......(((((....((((((............................))))))...)))))..((((((....))))))....((((..(((((((....(((((((......)))))))..))).)))).)))).................((((.......))))(((((....)))))...))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	O002 Head	M025 embryo	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo
.........................................................................................................................................................................................................................................................................ACTCACCGATCCACCGCGACTG..........................	22	0	1	1.00	1	1	0	0	0	0	0	0	0	0
...................................................................................................................................TAATTTTATTCCTACAAC....................................................................................................................................................................	18	0	2	1.00	2	0	2	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTAGATACTCATCGATCC....................................	18	1	2	0.50	1	0	0	1	0	0	0	0	0	0
...............................CAGGGACAGTCGGGT...........................................................................................................................................................................................................................................................................	15	1	5	0.20	1	0	0	0	1	0	0	0	0	0
..................................................................................AATCGGCTGATAAGATCTCAA..................................................................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	1	0	0	0
................................................................................................................................................................................TAATGATGGCCAGGCTGTCT.....................................................................................................................	20	3	17	0.12	2	0	0	0	0	2	0	0	0	0
........................................................................................................................................................................................................................................................................................GCGACTGATAAGAAAAAA...............	18	2	12	0.08	1	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................ATATCCACCGCGACTG..........................	16	2	20	0.05	1	0	0	0	0	0	0	1	0	0
.........................................CGGGTTGAGGTACGGAGAC.............................................................................................................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0	0	0
......................................................................................................................................................TTACCAGTGAATTCAGA..................................................................................................................................................	17	2	20	0.05	1	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................TAAGAGTGGCCAACCTGTA......................................................................................................................	19	3	20	0.05	1	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................GGAATGTTAAAAAATATTTAG....................................................................	21	3	20	0.05	1	0	0	0	0	0	0	0	0	1
.............................CTCAGGGTCATTCGGG............................................................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	1	0	0	0	0	0

Anti-sense strand reads

AGTTGACCGACGTGCTGCCGTTTGGGTATGAGTCCCTGTTAGCCCAACTCCACTCGTCTGTTGGGGTATAGTAAGTATTAAATTAGCCGAAAATTTTAGAGTTTAAAAATACTAAAATACCAAATTTTAGAATTAAAATAAGGATGTTGCAACGGTCACTTAATTCTATAATAAAAATTACTACCGGTTGGACATAATAGTGGTTAATATTTATGCAAAATTAGCATTACAATTATTTATAAATAACGAATAGGAAATTAATCTATGAGTGGCTAGGTGGCGCTGACTATTAATTTTTTCACGTTTTCCTTCT ************************************************((((((((......(((((....((((((............................))))))...)))))..((((((....))))))....((((..(((((((....(((((((......)))))))..))).)))).)))).................((((.......))))(((((....)))))...))))))))...........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	M053 female body	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR902009 testis
..................................................................................TTAGTCGAAAGTTTTAGAGT...................................................................................................................................................................................................................	20	2	3	20.00	60	37	7	1	5	3	4	2	1	0	0
...................................................................................TAGTCGAAAGTTTTAGAGT...................................................................................................................................................................................................................	19	2	4	7.50	30	23	2	2	0	2	0	0	1	0	0
...............................................................................AAATTAGTCGAAAGTTTTA.......................................................................................................................................................................................................................	19	2	18	2.67	48	39	1	5	0	0	0	3	0	0	0
...............................................................................AAATTAGTCGAAAGTTTTAGAGT...................................................................................................................................................................................................................	23	2	1	2.00	2	1	0	1	0	0	0	0	0	0	0
..................................................................................TTAGCCGAAAGTTTTA.......................................................................................................................................................................................................................	16	1	7	1.29	9	9	0	0	0	0	0	0	0	0	0
................................................................................AATTAGTCGAAAGTTTTA.......................................................................................................................................................................................................................	18	2	20	1.10	22	21	0	1	0	0	0	0	0	0	0
..................................................................................TTAGCCGAAAGTTTTAGAGT...................................................................................................................................................................................................................	20	1	1	1.00	1	1	0	0	0	0	0	0	0	0	0
..................................................................................TTAGTCGAAAGTTTTAGAGA...................................................................................................................................................................................................................	20	3	20	0.30	6	3	0	0	1	1	0	0	0	1	0
..................................................................................TTAGTCGAAAGTTCTAGAGT...................................................................................................................................................................................................................	20	3	13	0.23	3	1	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................ATGAGTGGGAAGGTGGCG...............................	18	2	5	0.20	1	0	0	1	0	0	0	0	0	0	0
............................................................TTCGGGTATAGTAGGTATC..........................................................................................................................................................................................................................................	19	3	20	0.10	2	0	0	0	0	0	0	0	0	2	0
.......................................................................................................................................AAAAAAGGATCTAGCAACGG..............................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	0	0	0	0	0	1
.................................................................................TTTAGTCGAAAGTTTTAGAGT...................................................................................................................................................................................................................	21	3	11	0.09	1	1	0	0	0	0	0	0	0	0	0
..........................TAGGCGTCCCTGTTAGC..............................................................................................................................................................................................................................................................................	17	2	11	0.09	1	0	0	1	0	0	0	0	0	0	0
..................................................................................TTAGTCGAGAGTTTTAGAGT...................................................................................................................................................................................................................	20	3	13	0.08	1	1	0	0	0	0	0	0	0	0	0
.......................................................................................CGAATATTTGAGAGTTAAAAA.............................................................................................................................................................................................................	21	3	13	0.08	1	1	0	0	0	0	0	0	0	0	0
............................TCAGTCACTGTTAGGCCAA..........................................................................................................................................................................................................................................................................	19	3	15	0.07	1	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................AATTTTTTCAAGTTTTCCC...	19	2	16	0.06	1	0	0	0	0	0	0	0	1	0	0

Generated: 04/24/2015 at 10:43 AM