ID:

dsi_25529

 Coordinate:

3l:7211017-7211166 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TTTATGGTGCTGGCCACGCCGTAGATGGAATGCGCCACGGGCACACCTCTGCGAAGGATCGAATTGTCTTCAATATCATCAATGCTGTAAGTTAGTATCAAGAACACACATGTATATAATTTGCCGTGAGTTAATTGTGTACTTATATATTCAAGCTTAATATACTTTCAAGCATTAGATACTACAATTTCACTGCCTTACAATCAACTTTGCAAAGAAAAAATTCGAGCCAGTCATGTGAAATTAGAAT
**************************************************...((((...(((((((......((((...((((((..((((..((((.(((.........((((((((((.((.....)).)))))))))).............))).))))))))...)))))).))))..))))))).....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
.......................GATGGAATGCGCCACGGGCA............................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0
...............................................................................................................................................................................................ACTGCCTTACAATCAACTTTG...................................... 21 0 1 1.00 1 0 0 1
........................................................................ATATCATCAATGCTGTAAGTTT............................................................................................................................................................ 22 1 1 1.00 1 0 1 0
..................................................................................................................................................................................................................................GAGCCAGTCATGTAAG........ 16 2 20 0.05 1 1 0 0

Anti-sense strand reads

AAATACCACGACCGGTGCGGCATCTACCTTACGCGGTGCCCGTGTGGAGACGCTTCCTAGCTTAACAGAAGTTATAGTAGTTACGACATTCAATCATAGTTCTTGTGTGTACATATATTAAACGGCACTCAATTAACACATGAATATATAAGTTCGAATTATATGAAAGTTCGTAATCTATGATGTTAAAGTGACGGAATGTTAGTTGAAACGTTTCTTTTTTAAGCTCGGTCAGTACACTTTAATCTTA
**************************************************...((((...(((((((......((((...((((((..((((..((((.(((.........((((((((((.((.....)).)))))))))).............))).))))))))...)))))).))))..))))))).....)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 GSM343915
embryo
................................................................................................................................................................................GCTATGATGTTAAAGTG......................................................... 17 1 1 3.00 3 1 1 0 1 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTAAAGT.......................................................... 15 0 1 3.00 3 1 2 0 0 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTAAAGTGGC....................................................... 18 1 1 3.00 3 2 0 1 0 0 0 0 0 0
............................TTACGCGGTGCCCGTGTGGAGACGC..................................................................................................................................................................................................... 25 0 1 2.00 2 0 0 0 0 2 0 0 0 0
................................................................................................................................................................................GCTATGATGTTAAAGTGGC....................................................... 19 2 2 1.50 3 0 2 1 0 0 0 0 0 0
.........................................................................................................................................................................TTCGTAATCTATGATGTTAAA............................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
..................................................................................................................................................................................TATGATGTTAAAGTGGC....................................................... 17 1 2 1.00 2 1 0 0 0 0 1 0 0 0
.........................................................TAGCTTAACAGAAGTTATAGTAGT......................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................TATGATGTTAAAGTGAC....................................................... 17 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................GCTATGATGTTAAAGTGA........................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTACAGTGAC....................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTAAAGTGA........................................................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................TATGATGTTAAAGTGTC....................................................... 17 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTAAAGTGGCT...................................................... 19 2 2 1.00 2 0 0 0 2 0 0 0 0 0
................................................................................................................................................................................GCTATGATGTTAAAGTGTC....................................................... 19 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTAAAGTGG........................................................ 17 1 3 0.67 2 1 1 0 0 0 0 0 0 0
................................................................................................................................................................................GCTATGATGTTAAAGT.......................................................... 16 1 3 0.67 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................CCATGATGTTAAAGTG......................................................... 16 1 4 0.50 2 2 0 0 0 0 0 0 0 0
...................................................................................................................................................................................ATGATGTTAAAGTGGC....................................................... 16 1 4 0.50 2 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTAAAGTGGCC...................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................CTATGATGTTAAATTGA........................................................ 17 1 2 0.50 1 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................TATGATGTTAAAGTG......................................................... 15 0 2 0.50 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TGATGTTAAAGTGGC....................................................... 15 1 7 0.43 3 0 3 0 0 0 0 0 0 0
................................................................................................................................................................................GCTATGATGTTAAAGTGT........................................................ 18 2 3 0.33 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................TCTATGATATTAAAGTGGC....................................................... 19 2 3 0.33 1 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................GGCTATGATGTTAAAGTGGC....................................................... 20 3 6 0.33 2 1 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................................................TTTTTGAGGTCGGACAGTAC............ 20 3 9 0.22 2 0 0 0 0 0 0 0 2 0
.................................................................................................................................................................................CTATGATGTTAAAGTT......................................................... 16 1 11 0.18 2 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................GCTATGATGTTAAAGTGTCT...................................................... 20 3 6 0.17 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................TCCATGATATTAAAGTGGC....................................................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................TCTGATGTTAAAGTG......................................................... 15 1 11 0.09 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TGGTTTCAACGTTTCTTTTTTA.......................... 22 3 13 0.08 1 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................GGCTATGATGTTAAAGTGT........................................................ 19 3 14 0.07 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................GCAATGATGTTAAAGTGGC....................................................... 19 3 15 0.07 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................TCAAGCTCGGTGAGTAC............ 17 2 17 0.06 1 0 0 1 0 0 0 0 0 0
.........................................................................................................AGTGTCCATATATTAAA................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................TTAAAGTGATGGAAT.................................................. 15 1 20 0.05 1 0 0 0 0 0 1 0 0 0

Generated: 04/23/2015 at 09:16 PM