dsi_25517

CDS [2r_6886944_6888211_-]; exon [2r_6886944_6888211_-]; intron [2r_6865129_6886943_-]

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Name	Class	Family	Strand
R1_DYa	LINE	R1	+

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAACAGCAGAGAACACAGCAGCGGCAGCAGCAGCAATGGAGCCATGACAGGTATGTTCCAGTGCAACTCTCAAGTATATTTTAGTCAATTTGGGAATATATATACTGTTCGAAACTTTAATATATCTATCTATCATATATCTTCATATGCAAAGCAATGTTCTTTGTCCCTCTTGCCGGTTACTTGCGATTTTTTATAGCACAAACGCCATCGTGAGTGATTGTAGCAAATATTTGAAAGACCTTAAGTC ************************************************(((.((.((...((((.((((((((............))))))))((((((.((..(((...)))..))))))))........(((((......)))))(((((.......)))))......)))).))..)).))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553485 Chicharo_3 day-old ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
................................................AGGTATGATCCAGGGCAA........................................................................................................................................................................................	18	2	2	0.50	1	0	1	0	0	0
...............................................CAGGTATGATCCAGT............................................................................................................................................................................................	15	1	4	0.25	1	1	0	0	0	0
..............................................................................................................................................................................................................................GTCGCAAATATATGAAAGA.........	19	2	5	0.20	1	0	0	1	0	0
..............................................ACAGGTATGATCCAATG...........................................................................................................................................................................................	17	2	8	0.13	1	1	0	0	0	0
.............................................................................ATTTTAGGCAATTTAGGAAGA........................................................................................................................................................	21	3	10	0.10	1	0	0	0	1	0
...............................................CAGGTATGATCCAGTC...........................................................................................................................................................................................	16	2	20	0.10	2	2	0	0	0	0
...........AACACAGCAGCGGCTG...............................................................................................................................................................................................................................	16	1	13	0.08	1	1	0	0	0	0
.............CACAGCAGCGGCACCA.............................................................................................................................................................................................................................	16	1	20	0.05	1	0	0	0	0	1
...............................................CAGGTATGATCCAGTCCC.........................................................................................................................................................................................	18	3	20	0.05	1	1	0	0	0	0

TTTGTCGTCTCTTGTGTCGTCGCCGTCGTCGTCGTTACCTCGGTACTGTCCATACAAGGTCACGTTGAGAGTTCATATAAAATCAGTTAAACCCTTATATATATGACAAGCTTTGAAATTATATAGATAGATAGTATATAGAAGTATACGTTTCGTTACAAGAAACAGGGAGAACGGCCAATGAACGCTAAAAAATATCGTGTTTGCGGTAGCACTCACTAACATCGTTTATAAACTTTCTGGAATTCAG ************************************************(((.((.((...((((.((((((((............))))))))((((((.((..(((...)))..))))))))........(((((......)))))(((((.......)))))......)))).))..)).))).............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553486 Makindu_3 day-old ovaries	M024 male body	SRR553487 NRT_0-2 hours eggs
...............................................GTCCATGCAAGGTCA............................................................................................................................................................................................	15	1	7	1.43	10	10	0	0	0	0
................................................................................................................................................................AGAAACACGGAGAACG..........................................................................	16	1	2	0.50	1	0	1	0	0	0
.................................................................................................................................................................................................AATATGGTGTTTGCG..........................................	15	1	14	0.14	2	0	0	2	0	0
..............................................................................................................................................................................................................CGGTTGCACTCTCTAACGT.........................	19	3	20	0.10	2	0	0	0	2	0
.......................................................................................................................................ATAAAGAAGTATACGTT..................................................................................................	17	1	10	0.10	1	1	0	0	0	0
........CTCTTGTGTCGTCGA...................................................................................................................................................................................................................................	15	1	10	0.10	1	0	0	0	0	1
...............................................TTCCATACAAGGTCA............................................................................................................................................................................................	15	1	11	0.09	1	1	0	0	0	0
...............................................................................................................................TAGATTGTATATAGA............................................................................................................	15	1	20	0.05	1	0	1	0	0	0
..............................................................................AAAATCTGTTATACCCT...........................................................................................................................................................	17	2	20	0.05	1	0	1	0	0	0

Re-alignment of all predicted orthologs

Species	Coordinate	ID	Alignment
droSim2	2r:6886744-6886993 -	dsi_25517	AAACAGC--AGAGAAC------ACAGCAGCGG---------------------------------------------CAGCAGCAGCA---ATGG-AGCCATGACAG----------------GTATGT--TCCAGTGCAA-----------------------------------------------------------------CTCTCA-------------------------------------------------------------------------AGT------------AT-AT------------------------------------------------------------------------------------------------------------------------TT----------TAGTCA---------------------------------------------------------------------------------------ATTTGGGAATATATATACTGTTCGAAACTTTAATATATCTATCTAT------------------------C----ATATATCTTCATATGCAA-AGCAATGTT--CTTTGTC--CCTCTTGCCGGTTACTTGCG---------------------------ATTTTTTATAGC-------ACAAAC------------------GCCATCGTGAGTGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC
droSec2	scaffold_1:3725948-3726194 -		AAACAGC--AGAGAAC------ACAGCAGCGG---------------------------------------------CAGCAGCAGCA---ATGG-AGCCATGACAG----------------GTATGT--TCCAGTGCAT-----------------------------------------------------------------CTCTCA-------------------------------------------------------------------------AGT------------AT-AT------------------------------------------------------------------------------------------------------------------------TT----------TAGTCA---------------------------------------------------------------------------------------ATTTGAGTATATATATACGGTTCGAAACTTTAATATATCT----CT------------------------A----ATATATATTCATGTGCAAAAGCAATGTT--CTTTGTC--ACTCTTGCCGGTTACTTGCG---------------------------ATTTTTTATAGC-------ACAAAC------------------GCCATCGTGAGTGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC
dm3	chr2R:6119329-6119581 -		AAACAGC--AGAGAGC------ACAGCAGCAG---------------------------------------------CAGCAGCGGCAGTAATGG-AGCCATGACAG----------------GTATGT--TCCAGTGCAA-----------------------------------------------------------------CTCTCA-------------------------------------------------------------------------ATT------------AT-AT------------------------------------------------------------------------------------------------------------------------TT----------TAGTCA---------------------------------------------------------------------------------------ATTTGGGAATATATATACTGTTCGAGACGATAATATATCTACCAAT------------------------A----ATATATCTTCATATGCAAAAGCAATGTT--CTTCGTC--ACTCTTGCTCTT----------------------------------------------A-------ACAAACGTTAAAGAATTTTACTAAGCCATTGTGAGTGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC
droEre2	scaffold_4929:8258746-8258987 +		CAACAGC--AGGGAAC------ACAGCAGCAG---------------------------------------------TGG---CAGCA---ATGG-AGCCATGACAG----------------GTACGT--TGC------------------------------------------------------------------------CACTCA-------------------------------------------------------------------------ACT------------AT-AG------------------------------------------------------------------------------------------------------------------------TT----------AAGTCACTCTAGGGATATTAATGTATGTTCCGCCAATATATCTAA---------------------------------------------------------------------------------------------------------------------------------CGTCATATGCAGTAGCCAAGTT----TTGCTAAACTCTTGCCGGTTACTGGCGTTTA--------------------------TTTTATGCC-------ACCAACGTTAAATAATTACAATAAGCCGTCG----TGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC
droYak3	2L:18745199-18745440 -		CAACAGC--CGAGAAC------ACAGCAGCAG---------------------------------------------TAG---CAGCA---ATGG-AGCCATGACAG----------------GTAAGT--TTCAGTGCAA-----------------------------------------------------------------CTCTTA-------------------------------------------------------------------------ACA------------AT-TG------------------------------------------------------------------------------------------------------------------------CT----------TAGTCAATTTAGGGA----------TTTTCTGGTAATATATCCAA---------------------------------------------------------------------------------------------------------------------------------ATGCATATGCAGAGGCCGTGCT----TTGCCAAACTCTTGCCCGTTATTTGCG---------------------------ATTTTTTATGGC-------ACAAACTTTAAAGAGTTTCAATAAGCCGTCGTGGGTGATTGTCGCAAATA-------------------TTTGAAAGACCT--TAAGTC
droEug1	scf7180000409209:60353-60647 +		CAACAGC--AGAGAGC------ACAGCAACAG---------------------------------------------CAGCAGCAGCA---ATGG-AGCCATGACAG----------------GTAATT---CCATTGGAAATATATTAAAAATATATTCAAATAGTTAATGCTTTTTTAAACACAAAATCTTAAGTTAATTTGAAACCTTAACCAAAACATAA-------------------------------------------------------------ATC------------AT-CA------------------------------------------------------------------------------------------------------------------------G-CCATTAGAGA---------------------------------------------------------------------------------------------GGCT----------------------------------------TTAAGA----TTGATAT--T----------------------TTTACCCCATCTA---------------------------------------ACATT----GATG-TTTCTTGAAATTGAACATAAA-------ACAAACATCAATGTTTTTCCATCATCAGTCTTGAGTGATTGTGGCTAATA-------------------TTTGAAAGATCT--TAAGTC
droBia1	scf7180000301754:209999-210289 +		AAACAAC--AGAGAAC------ACAGCAGCAG---------------------------------------------CA------GCA---ATGG-CGCCATGACAG----------------GTAAAT--TTA--------------------------------------------------------------------------------------------------------GATTAAAGGA-------------------------------------------------------------------------------------------AACTAGAACCAACTTCGTAGATATCACCTGTAAGAAAATATTTCCTTATATCAGAAGCCCCTTAGAAACCTTATTTTGTAATATGTTT----------AAATCA---------------------------------------------------------------------------------------ATTTAAAAGTTTAAG-----------------------------------------------------------------------TTTACCTA-GTGGTACC----CAGCAACAGTCATAA----------------ACATT----GATTATACCTAGAAAATTCACATAGATACTCAAAGAAGA------------------ACTGTCAAGAGTGATTGTGGCAAATA-------------------TTTGAAAGATCT--TAAGTC
droTak1	scf7180000415843:100104-100255 +		AATAAGC--GAACAAC------AATGTGAACG---------------------------------------------TAACATCATCA--------TGTAATGACAG----------------TCTAGT--TTCAGCGAA------------------------------------------------------------------CTTTTAACTAATATATAATATCAAATAATAA--------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTG----TCAATATATTTTAATTT----------------------------------------------TTTTT--ACTCTTACTA-------------------TAATTATG----------TTT-T--------------------------------------------------------------------------------------------TTA--TAACTT
droEle1	scf7180000490683:3961-4105 -		AAACAAT--TACAACG------GCGACAACGG---------------------------------------------CAGTGACGACA---ACAA-AGACA--CCAG----------------CTAAGT--TA-------A-----------------------------------------------------------------TCTTAA-------------------------------------------------------------------------AAT------------TT-ATTTTTATAAGTTACGAGCAATTTAATATTAAGAAAAGATAAATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAGATTT----ATATATATACATATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC
droRho1	scf7180000779985:1643293-1643387 +		AAAAAGG--AGCAACT------GCGGCAACAA----------------------------------------------AGGAACAGCA---ACTG-GA----AGCAG-----------AACAACAGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCATGTCAGTAATCTTGTACTAGTCGACTTGGAGA
droFic1	scf7180000454066:1601534-1601658 +		ATCCATA--AAACAAT-C----TTAGCTACCA----------------------------------------------AAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATG--TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCGGCAGTTTTACAATTTTATT-------------------------------------------TATGCCAAAACAA---------------------------------------------------------------------------------ACATTT------------------GCTAACTTGACAGATAGTTGTAAATA-------------------TTTGAAAGATCT--TAAGTC
droKik1	scf7180000302441:2840440-2840730 -		AAACAATTCAGCGACC------ACAGCAACAGATTCCACAACAACAACATCAACAGATTATCGGACAGTTTCCACAACAACAGCAGCA---ACAACAACCACAGCAG----------------GTATGT--TAAA------------------------------------------------------------------------AAT-------------------------TTTAA---------TTTAATATTTA--------------AGCAAATTTC----------------------------------CAGG------AGGTTAAGAAAACTCAAATCCT----------------------------------------------------------------------------------------------ATTCTTGG----------TTTTTTGGTGATATATAAGAAATCAAATGCATAACAAGATTATTTGATTTTATTTGAATTTTTATTAC--------------------TTACAGGCA-----------------------------------------------------------------------TTG----CAACAACAGCCA----------------------------------------------------AT-------ACA-AC------------------AACAACAACAGCAGCAGCAG--------------------------------------------C
droAna3	scaffold_13266:2509055-2509180 +		CAGCAAT--TACTGCA------GCAACAGCAA---------------------------------------------------TTGAG---ACGG-AGCCATAAAAA----------------GTATAT--ATA-ATGTAAGTACAT-----------------------------------------------------------TTC------------------------AGAA--------------------------CAT------------------------------------G-------------------------ATATAAAAAAGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATGTTTATTATATTTTTTGAAGCCA--TATGCA
droBip1	scf7180000391630:248-401 -		CAACAGC--AACAACA------TCACAAGCAG---------------------------------------------CAG---CGGCA---ACAG-CAAC----AAC-----------ATCAGCAGCAA--TA-------A-----------------------------------------------------------------T----------------------------TA-G---------------------AAAG--TAGTCCTCGGCAAGTTTCGTTT------------TT-ATTTTTATATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------CATAAACACTTGAATTTA---------GTTTTGAACTTAATTTAATTTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--CATATA
dp5	2:12636915-12637041 -		CAACAAC--AACAACA------ACAACTGTAA---------------------------------------------TTGCAACTGCAACAGCAG---CGGCCAC-AACAACAACAGCTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGCAAGAACAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTACAATATATATTTTATTTTTTTAATTTAATTATTTA
droPer2	scaffold_0:3433511-3433603 +		CAGCAGC--AGCGACT------GCAGAGGCAG---------------------------------------------CAA---CAGGT---TGTC-AGCCCTCATGC----------------ATATGT--ATGTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTTTTGATCA----GTGT---------------------------------------A------------------------TGTA----------------------------------------------------------------------------TGT---------------------------------AT--TGTTTG
droWil2	scf2_1100000004540:2526839-2526990 -		CAGCAGC--CGCCGCC------GCTGCTGCCG---------------------------------------------CTGCAGCTGCTGCCAATG------TGGCAG----------------CCACAA--TTA--------------------------------------------------------------------------------------------------------AAATCAAGCAG-----------AATG--TAA----------------AATTCCTTTCTTTATTC-AT------------------------------------------------------------------------------------------------------------TTTGCTCAATATTT----------ACATAT---------------------------------------------------------------------------------------GTATATACG-------------------------------------------------TATAGTA-----TATAGATAT---------------------------------------A------------------------TACA----------------------------------------------------------------------------------------------------------------TA--TATTCT
droVir3	scaffold_13324:2690702-2690804 +		AACAGCC--CG-TCTATAATACGCAGCAACAG---------------------------------------------CAGCAGCCACA---GATG-GTGCAAGCGGG----------------ATATGC--GCC------------------------------------------------------------------------CCCACA---------------------GGTA--------------------------GGT------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------TGGTCG---------------------------------------------------------------------------------------ACTTGGGCTTG----TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTC
droMoj3	scaffold_6359:3932738-3932858 +		CAGCAGC--AGCAGCA------GCAGCAGCAG---------------------------------------------CAGCACCAGCAGCAGCAG---CAGCAGCAG----------------ACCGCCCTCCCAGTTGGC-----------------------------------------------------------------CCATCA-------------------------------------------------------------------------ATT------------AT-CC------------------------------------------------------------------------------------------------------------------------T-TTCTCAGCCA---------------------------------------------------------------------------------------------AGCTGTGTGTATTTCCACTTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAC
droGri2	scaffold_14853:1492025-1492225 +		AG-CAAC--AGCAACA------ACAGCAGCAG---------------------------------------------CAACAACAGCA---AGTG-AA-----AGAG----------------GCAAGA--CTA--------------------------------------------------------------------------------------------------------AA---------TTGAATCCTTA-------------------------AAA------------AG-CG------------------------------------------------------------GCAG--------------------------------------------------------CT----------AAGCTGCGTATGAGTAATCTACATACAT---------------------------------------------------------------------------------------------------ACATGCACACA-------------------------T----ACATACGTACATATGTACAAGCCACATCAATTTTATT--CGTGTTGCCTTTTGCTTTTT---A-----TTTTTATG----------TG----TGTCGC-------ACAC---------------------------------------------------------------------------------ACAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AAACAGC--AGAGAAC------ACAGCAGCGG---------------------------------------------CAGCAGCAGCA---ATGG-AGCCATGACAG----------------GTATGT--TCCAGTGCAA-----------------------------------------------------------------CTCTCA-------------------------------------------------------------------------AGT------------AT-AT------------------------------------------------------------------------------------------------------------------------TT----------TAGTCA---------------------------------------------------------------------------------------ATTTGGGAATATATATACTGTTCGAAACTTTAATATATCTATCTAT------------------------C----ATATATCTTCATATGCAA-AGCAATGTT--CTTTGTC--CCTCTTGCCGGTTACTTGCG---------------------------ATTTTTTATAGC-------ACAAAC------------------GCCATCGTGAGTGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

AAACAGC--AGAGAAC------ACAGCAGCGG---------------------------------------------CAGCAGCAGCA---ATGG-AGCCATGACAG----------------GTATGT--TCCAGTGCAT-----------------------------------------------------------------CTCTCA-------------------------------------------------------------------------AGT------------AT-AT------------------------------------------------------------------------------------------------------------------------TT----------TAGTCA---------------------------------------------------------------------------------------ATTTGAGTATATATATACGGTTCGAAACTTTAATATATCT----CT------------------------A----ATATATATTCATGTGCAAAAGCAATGTT--CTTTGTC--ACTCTTGCCGGTTACTTGCG---------------------------ATTTTTTATAGC-------ACAAAC------------------GCCATCGTGAGTGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

AAACAGC--AGAGAGC------ACAGCAGCAG---------------------------------------------CAGCAGCGGCAGTAATGG-AGCCATGACAG----------------GTATGT--TCCAGTGCAA-----------------------------------------------------------------CTCTCA-------------------------------------------------------------------------ATT------------AT-AT------------------------------------------------------------------------------------------------------------------------TT----------TAGTCA---------------------------------------------------------------------------------------ATTTGGGAATATATATACTGTTCGAGACGATAATATATCTACCAAT------------------------A----ATATATCTTCATATGCAAAAGCAATGTT--CTTCGTC--ACTCTTGCTCTT----------------------------------------------A-------ACAAACGTTAAAGAATTTTACTAAGCCATTGTGAGTGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................T----------TAGTCA---------------------------------------------------------------------------------------ATTTGGGAATATCG...............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCGTC--ACTCTTGCTCTT----------------------------------------------A-------AC.......................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTGATTGTAGCAAATA-------------------....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AGCAGCAG---------------------------------------------CAGCAGCGGCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	8	0.38	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............C------ACAGCAGCAG---------------------------------------------CAGCAGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACAGCAGCAG---------------------------------------------CAGCAGCGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................ACAGCAGCAG---------------------------------------------CAGCAGCGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GC------ACAGCAGCAG---------------------------------------------CAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GC------ACAGCAGCAG---------------------------------------------CAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

CAACAGC--AGGGAAC------ACAGCAGCAG---------------------------------------------TGG---CAGCA---ATGG-AGCCATGACAG----------------GTACGT--TGC------------------------------------------------------------------------CACTCA-------------------------------------------------------------------------ACT------------AT-AG------------------------------------------------------------------------------------------------------------------------TT----------AAGTCACTCTAGGGATATTAATGTATGTTCCGCCAATATATCTAA---------------------------------------------------------------------------------------------------------------------------------CGTCATATGCAGTAGCCAAGTT----TTGCTAAACTCTTGCCGGTTACTGGCGTTTA--------------------------TTTTATGCC-------ACCAACGTTAAATAATTACAATAAGCCGTCG----TGATTGTAGCAAATA-------------------TTTGAAAGACCT--TAAGTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

droYak3

CAACAGC--CGAGAAC------ACAGCAGCAG---------------------------------------------TAG---CAGCA---ATGG-AGCCATGACAG----------------GTAAGT--TTCAGTGCAA-----------------------------------------------------------------CTCTTA-------------------------------------------------------------------------ACA------------AT-TG------------------------------------------------------------------------------------------------------------------------CT----------TAGTCAATTTAGGGA----------TTTTCTGGTAATATATCCAA---------------------------------------------------------------------------------------------------------------------------------ATGCATATGCAGAGGCCGTGCT----TTGCCAAACTCTTGCCCGTTATTTGCG---------------------------ATTTTTTATGGC-------ACAAACTTTAAAGAGTTTCAATAAGCCGTCGTGGGTGATTGTCGCAAATA-------------------TTTGAAAGACCT--TAAGTC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEug1

CAACAGC--AGAGAGC------ACAGCAACAG---------------------------------------------CAGCAGCAGCA---ATGG-AGCCATGACAG----------------GTAATT---CCATTGGAAATATATTAAAAATATATTCAAATAGTTAATGCTTTTTTAAACACAAAATCTTAAGTTAATTTGAAACCTTAACCAAAACATAA-------------------------------------------------------------ATC------------AT-CA------------------------------------------------------------------------------------------------------------------------G-CCATTAGAGA---------------------------------------------------------------------------------------------GGCT----------------------------------------TTAAGA----TTGATAT--T----------------------TTTACCCCATCTA---------------------------------------ACATT----GATG-TTTCTTGAAATTGAACATAAA-------ACAAACATCAATGTTTTTCCATCATCAGTCTTGAGTGATTGTGGCTAATA-------------------TTTGAAAGATCT--TAAGTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAACAAC--AGAGAAC------ACAGCAGCAG---------------------------------------------CA------GCA---ATGG-CGCCATGACAG----------------GTAAAT--TTA--------------------------------------------------------------------------------------------------------GATTAAAGGA-------------------------------------------------------------------------------------------AACTAGAACCAACTTCGTAGATATCACCTGTAAGAAAATATTTCCTTATATCAGAAGCCCCTTAGAAACCTTATTTTGTAATATGTTT----------AAATCA---------------------------------------------------------------------------------------ATTTAAAAGTTTAAG-----------------------------------------------------------------------TTTACCTA-GTGGTACC----CAGCAACAGTCATAA----------------ACATT----GATTATACCTAGAAAATTCACATAGATACTCAAAGAAGA------------------ACTGTCAAGAGTGATTGTGGCAAATA-------------------TTTGAAAGATCT--TAAGTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATAAGC--GAACAAC------AATGTGAACG---------------------------------------------TAACATCATCA--------TGTAATGACAG----------------TCTAGT--TTCAGCGAA------------------------------------------------------------------CTTTTAACTAATATATAATATCAAATAATAA--------------------------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGTTG----TCAATATATTTTAATTT----------------------------------------------TTTTT--ACTCTTACTA-------------------TAATTATG----------TTT-T--------------------------------------------------------------------------------------------TTA--TAACTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAACAAT--TACAACG------GCGACAACGG---------------------------------------------CAGTGACGACA---ACAA-AGACA--CCAG----------------CTAAGT--TA-------A-----------------------------------------------------------------TCTTAA-------------------------------------------------------------------------AAT------------TT-ATTTTTATAAGTTACGAGCAATTTAATATTAAGAAAAGATAAATCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTCAGATTT----ATATATATACATATAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAAAGG--AGCAACT------GCGGCAACAA----------------------------------------------AGGAACAGCA---ACTG-GA----AGCAG-----------AACAACAGCAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTTGGCATGTCAGTAATCTTGTACTAGTCGACTTGGAGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ATCCATA--AAACAAT-C----TTAGCTACCA----------------------------------------------AAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATG--TTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTCGGCAGTTTTACAATTTTATT-------------------------------------------TATGCCAAAACAA---------------------------------------------------------------------------------ACATTT------------------GCTAACTTGACAGATAGTTGTAAATA-------------------TTTGAAAGATCT--TAAGTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAACAATTCAGCGACC------ACAGCAACAGATTCCACAACAACAACATCAACAGATTATCGGACAGTTTCCACAACAACAGCAGCA---ACAACAACCACAGCAG----------------GTATGT--TAAA------------------------------------------------------------------------AAT-------------------------TTTAA---------TTTAATATTTA--------------AGCAAATTTC----------------------------------CAGG------AGGTTAAGAAAACTCAAATCCT----------------------------------------------------------------------------------------------ATTCTTGG----------TTTTTTGGTGATATATAAGAAATCAAATGCATAACAAGATTATTTGATTTTATTTGAATTTTTATTAC--------------------TTACAGGCA-----------------------------------------------------------------------TTG----CAACAACAGCCA----------------------------------------------------AT-------ACA-AC------------------AACAACAACAGCAGCAGCAG--------------------------------------------C	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CAGCAAT--TACTGCA------GCAACAGCAA---------------------------------------------------TTGAG---ACGG-AGCCATAAAAA----------------GTATAT--ATA-ATGTAAGTACAT-----------------------------------------------------------TTC------------------------AGAA--------------------------CAT------------------------------------G-------------------------ATATAAAAAAGGGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTAATATGTTTATTATATTTTTTGAAGCCA--TATGCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........TACTGCA------GCAACAGCAA---------------------------------------------------TTGAG---ACGG-...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1

droBip1

CAACAGC--AACAACA------TCACAAGCAG---------------------------------------------CAG---CGGCA---ACAG-CAAC----AAC-----------ATCAGCAGCAA--TA-------A-----------------------------------------------------------------T----------------------------TA-G---------------------AAAG--TAGTCCTCGGCAAGTTTCGTTT------------TT-ATTTTTATATTTTA--------------------------------------------------------------------------------------------------------------------------------------------------------------CATAAACACTTGAATTTA---------GTTTTGAACTTAATTTAATTTAAAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AA--CATATA	Size	Hit Count	Total Norm	Total
No Reads

dp5

CAACAAC--AACAACA------ACAACTGTAA---------------------------------------------TTGCAACTGCAACAGCAG---CGGCCAC-AACAACAACAGCTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGCAAGAACAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTACAATATATATTTTATTTTTTTAATTTAATTATTTA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................GCAACAGCAG---CGGCCAC-AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	1	0	0	0	0	0	0	0
.......................................................................................................AC-AACAACAACAGCTCCAGATAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................GGCCAC-AACAACAACAGCTCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................AACAACAGCTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.AACAAC--AACAACA------ACAACTGTAA---------------------------------------------T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................CAACAGCAG---CGGCCAC-AAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................CTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................TCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGCAAGAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.AACAAC--AACAACA------ACAACTGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........CAACA------ACAACTGTAA---------------------------------------------TTGCAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....AC--AACAACA------ACAACTGTAA---------------------------------------------TTGCAACC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................G---CGGCCAC-AACAACAACAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..ACAAC--AACAACA------ACAACTGTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....AC--AACAACA------ACAACTGTAA---------------------------------------------TTGCAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
CAACAAC--AACAACA------ACAACTGTAA---------------------------------------------TTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...CAAC--AACAACA------ACAACTGTAA---------------------------------------------TT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................CCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGCAAGAACAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.......................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................C-AACAACAACAGCTCCAGATAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....AC--AACAACA------ACAACTGTAA---------------------------------------------TTGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................AA---------------------------------------------TTGCAACTGCAACAGCAG---CGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................GCTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGCAAGAACA......................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....AAC--AACAACA------ACAACTGTAA---------------------------------------------TTGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................ACTGCAACAGCAG---CGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........ACAACA------ACAACTGTAA---------------------------------------------TTGCAACT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....AC--AACAACA------ACAACTGTAA---------------------------------------------TTGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................CTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................CTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GCAGCAAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................AACAACAACAGCTCCAGATAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCA------------------------------------------------------------GC................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................GTAA---------------------------------------------TTGCAACTGCAACAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................GCAACTGCAACAGCAG---CGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................A---------------------------------------------TTGCAACTGCAACAGCAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.AACAAC--AACAACA------ACAACTGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0
.AACAAC--AACAACA------ACAACTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAGCAGC--AGCGACT------GCAGAGGCAG---------------------------------------------CAA---CAGGT---TGTC-AGCCCTCATGC----------------ATATGT--ATGTGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTGTTTTGATCA----GTGT---------------------------------------A------------------------TGTA----------------------------------------------------------------------------TGT---------------------------------AT--TGTTTG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droWil2

CAGCAGC--CGCCGCC------GCTGCTGCCG---------------------------------------------CTGCAGCTGCTGCCAATG------TGGCAG----------------CCACAA--TTA--------------------------------------------------------------------------------------------------------AAATCAAGCAG-----------AATG--TAA----------------AATTCCTTTCTTTATTC-AT------------------------------------------------------------------------------------------------------------TTTGCTCAATATTT----------ACATAT---------------------------------------------------------------------------------------GTATATACG-------------------------------------------------TATAGTA-----TATAGATAT---------------------------------------A------------------------TACA----------------------------------------------------------------------------------------------------------------TA--TATTCT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

droVir3

AACAGCC--CG-TCTATAATACGCAGCAACAG---------------------------------------------CAGCAGCCACA---GATG-GTGCAAGCGGG----------------ATATGC--GCC------------------------------------------------------------------------CCCACA---------------------GGTA--------------------------GGT------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------TGGTCG---------------------------------------------------------------------------------------ACTTGGGCTTG----TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG---------------------------------------------------------------------------------------ACTTGGGCTTG----TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C....	18	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	0	2	4	0	1	0	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---------------------------------------------------------------------------------------ACTTGGGCTTG----TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C....	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................CACA---GATG-GTGCAAGCGGG----------------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................GTA--------------------------GGT------------------------------------G--------------------------------------------------------------------------------------------------------------------------------------TGGTCG---------------------------------------------------------------------------------------ACTTGGGC.....................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TCG---------------------------------------------------------------------------------------ACTTGGGCTTG----TAC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................AACAG---------------------------------------------CAGCAGCCACA---GATG-GT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGCAGC--AGCAGCA------GCAGCAGCAG---------------------------------------------CAGCACCAGCAGCAGCAG---CAGCAGCAG----------------ACCGCCCTCCCAGTTGGC-----------------------------------------------------------------CCATCA-------------------------------------------------------------------------ATT------------AT-CC------------------------------------------------------------------------------------------------------------------------T-TTCTCAGCCA---------------------------------------------------------------------------------------------AGCTGTGTGTATTTCCACTTTGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................GCAGCAGCAG---------------------------------------------CAGCACCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
...............A------GCAGCAGCAG---------------------------------------------CAGCACCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.............................................................................CAGCACCAGCAGCAGCAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
............................GCAG---------------------------------------------CAGCACCAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.............GCA------GCAGCAGCAG---------------------------------------------CAGCAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
..................................................................................CCAGCAGCAGCAG---CAGCAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0
...............................G---------------------------------------------CAGCACCAGCAGCAGCAG---C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droGri2

AG-CAAC--AGCAACA------ACAGCAGCAG---------------------------------------------CAACAACAGCA---AGTG-AA-----AGAG----------------GCAAGA--CTA--------------------------------------------------------------------------------------------------------AA---------TTGAATCCTTA-------------------------AAA------------AG-CG------------------------------------------------------------GCAG--------------------------------------------------------CT----------AAGCTGCGTATGAGTAATCTACATACAT---------------------------------------------------------------------------------------------------ACATGCACACA-------------------------T----ACATACGTACATATGTACAAGCCACATCAATTTTATT--CGTGTTGCCTTTTGCTTTTT---A-----TTTTTATG----------TG----TGTCGC-------ACAC---------------------------------------------------------------------------------ACAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.G-CAAC--AGCAACA------ACAGCAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0
.....AC--AGCAACA------ACAGCAGCAG---------------------------------------------CAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0
.....AC--AGCAACA------ACAGCAGCAG---------------------------------------------CA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1
.............ACA------ACAGCAGCAG---------------------------------------------CAACAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1

dsi_25517

2r:6886794-6886943 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads