ID:

dsi_25506

 Coordinate:

2r:5650319-5650468 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_5650004_5650318_+]; CDS [2r_5650004_5650318_+]; intron [2r_5650319_5651673_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TCCCCAGCTGCCCATCTACATTGCTCAGCCTAGCGCGAAAAAGCCAGAAAGTAAGTTCCGATTGCCTAACGAGAGTGGAGAGCACACTGAGGACAATGCACCCCGAATTATCTAAACAAAAAGAATGTGATAGATTTACAGACTTGTTCCGGTATTGACTTGCAAACATTTTACTTGACTTCGATTGTCCAGGAAAGTGAGCCAGAGTAAAGGTCATTTTACTTCCCATTTTTAAGGTCAAATCCATTAT
**************************************************((((((..((((.(((.((((((((((.......))))..((........))........(((........))).(((((.....)))))..))))))..)))))))))))))...(((((..((.(((.......))).))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total O001
Testis
 M023
head
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
.....................TGCTCAGCCTAGCGCGAAAAA................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0
.............................................................................................................................................ACCTGTTCAGGTATTGAC........................................................................................... 18 2 2 0.50 1 0 1 0 0 0
............................................................................................................................................................................................CCAGGAAAGGGAGCCA.............................................. 16 1 4 0.25 1 0 0 1 0 0
.............................................................................................................................................AATTGTTCAGGTATTGAC........................................................................................... 18 2 5 0.20 1 0 0 0 1 0
.........................................................................................................................................................................TCTACTTGTCTTCGATCGTC............................................................. 20 3 6 0.17 1 0 0 0 0 1

Anti-sense strand reads

AGGGGTCGACGGGTAGATGTAACGAGTCGGATCGCGCTTTTTCGGTCTTTCATTCAAGGCTAACGGATTGCTCTCACCTCTCGTGTGACTCCTGTTACGTGGGGCTTAATAGATTTGTTTTTCTTACACTATCTAAATGTCTGAACAAGGCCATAACTGAACGTTTGTAAAATGAACTGAAGCTAACAGGTCCTTTCACTCGGTCTCATTTCCAGTAAAATGAAGGGTAAAAATTCCAGTTTAGGTAATA
**************************************************((((((..((((.(((.((((((((((.......))))..((........))........(((........))).(((((.....)))))..))))))..)))))))))))))...(((((..((.(((.......))).))..))))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 M024
male body		 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
...................................................................................................................................TCTAAATGTCAGAACACG..................................................................................................... 18 2 7 1.14 8 0 5 3 0 0 0 0 0
.............TAGATGGAACGAGTCGGAA.......................................................................................................................................................................................................................... 19 2 1 1.00 1 1 0 0 0 0 0 0 0
...................................................................................................................................TCTAAATGTCAGAACA....................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0
....................................................................................................................................CTAAATGTCAGAACACGGA................................................................................................... 19 3 10 0.50 5 0 3 2 0 0 0 0 0
.........CGGGTAGATGTAGAGAGACG............................................................................................................................................................................................................................. 20 3 10 0.50 5 0 3 1 0 1 0 0 0
....................................................................................................................................CTAAATGTCAGAACACGG.................................................................................................... 18 2 2 0.50 1 0 0 1 0 0 0 0 0
...........................................................................ACCTCTCGTGTTACCCCTCTT.......................................................................................................................................................... 21 3 5 0.40 2 2 0 0 0 0 0 0 0
...................................................................................................................................TCTAAATGTCAGAACATG..................................................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0
...................................................................................................................................TCTAAATGTCAGAAC........................................................................................................ 15 1 12 0.17 2 1 0 0 1 0 0 0 0
....................................................................................................................................CTAAATGTCAGAACACG..................................................................................................... 17 2 11 0.09 1 0 0 0 1 0 0 0 0
..............................................................ACAGAGTGCTGTCACCTCT......................................................................................................................................................................... 19 3 15 0.07 1 0 0 0 0 0 1 0 0
...............................................................................................................................................................................................................................AGGGTAGAAATTCCA............ 15 1 16 0.06 1 0 0 0 0 0 0 1 0
.............TAGATGTCAGGAGTCG............................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 1

Generated: 04/23/2015 at 08:49 PM