ID:

dsi_25456

 Coordinate:

2r:4846628-4846777 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-16.7 -16.5 -16.5

Flybase annnotation

exon [2r_4846419_4846627_-]; CDS [2r_4846419_4846627_-]; intron [2r_4846628_4846986_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCTATCTAGAAGGTATAATCCCAAGATATTTCATATCTTATATACACAGATCTATTAACAGGTTCAGTCACTCATTCCTATAGGCGTGAAATCAGTTCAATATCATTTAAATTTTGTATTTCATAATAAAATCAGACAGAATCCCGGAAAAAGATACATCCTATAGAAAATTAACAACTGATCTTAATCATTCATTCAGGTGGACATTGAGATCAATGGCGCACCGGTCGACATACAGATGAAGCTGGG
**************************************************..........(((.(((((.........(((((((.(((..(((..(((....((..((..(((((((........)))))))..))..))......)))...))).))))))))))..........))))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.......................................................................................................................................................................................................GGTGGACATTGAGATCAATGGCGCACC........................ 27 0 1 1.00 1 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................ACATTGAGATCAATGGCGCACCGGTC.................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................................................................................................................................................................GAGATCAATGGCGCACCGGTC.................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................GGCGCACCGGTCGACATACAGATGAAGC.... 28 0 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................TATAGAAAATTAACAACTGATCTTA............................................................... 25 0 1 1.00 1 0 0 0 1 0 0 0 0
......................................................................................................................................................................................................TGGTGGACATTGAGATCAATGGCGC........................... 25 1 1 1.00 1 0 0 1 0 0 0 0 0
.................................................................................................TTAATATCAATTGAATTTTGTA................................................................................................................................... 22 3 19 0.11 2 0 0 0 0 2 0 0 0
...........................................................................................................................................................................................ATCATTCATGCAGACGGACA........................................... 20 3 17 0.06 1 0 0 0 0 0 1 0 0
................................................................TCAGTCTCTCTCTCCTATA....................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0
..............................................................................................................................ACAAAATCAGACAGAA............................................................................................................ 16 1 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

TGGATAGATCTTCCATATTAGGGTTCTATAAAGTATAGAATATATGTGTCTAGATAATTGTCCAAGTCAGTGAGTAAGGATATCCGCACTTTAGTCAAGTTATAGTAAATTTAAAACATAAAGTATTATTTTAGTCTGTCTTAGGGCCTTTTTCTATGTAGGATATCTTTTAATTGTTGACTAGAATTAGTAAGTAAGTCCACCTGTAACTCTAGTTACCGCGTGGCCAGCTGTATGTCTACTTCGACCC
**************************************************..........(((.(((((.........(((((((.(((..(((..(((....((..((..(((((((........)))))))..))..))......)))...))).))))))))))..........))))).)))..............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
....................................................................................................................................................TTTTTCTATGTAGGCTAACCTT................................................................................ 22 3 6 3.50 21 20 0 0 0 1 0
......................................TAAATATGTGTCTAGATAATT............................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0
..............................................TGTCTAGCTAATTGTC............................................................................................................................................................................................ 16 1 3 0.33 1 0 0 0 1 0 0
.........................................................................................................................................................................TCAATTGTTGACTAGA................................................................. 16 1 5 0.20 1 0 0 1 0 0 0
....................................................................................................................................................TTTTTCTATGTAGGCTAACCT................................................................................. 21 3 7 0.14 1 1 0 0 0 0 0
...........................................................................................................................................................................AAATGTGGACTAGAATTA............................................................. 18 2 9 0.11 1 0 1 0 0 0 0
...........................................................................................................................................................................AATTGTTGACTAGAC................................................................ 15 1 10 0.10 1 0 0 1 0 0 0
..........................................................................................................................................................................CAATTGTTGACTAGA................................................................. 15 1 11 0.09 1 0 0 1 0 0 0
.........................................................................................................................................................................TCAATTGTTGACTAG.................................................................. 15 1 15 0.07 1 0 0 1 0 0 0
...........................................ATGTGTCTAGACAAGTTTC............................................................................................................................................................................................ 19 3 20 0.05 1 0 0 0 1 0 0
..........................................................................TCAGGATACCCGCACT................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 07:30 AM