ID:

dsi_25455

 Coordinate:

2l:7924106-7924299 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [2l_7924300_7924451_-]; CDS [2l_7924300_7924451_-]; exon [2l_7923753_7924105_-]; CDS [2l_7923753_7924105_-]; intron [2l_7924106_7924299_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GTCTAACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGATTTATATAACCTTGGAGTCGTCTTTGGGGCGGCCAATTAAGCACCAATTGACGGCGTCTATTAATAAGCATCGCACATCGCGAAATGTCGACGCCCCACACTTGATTGTAAACAGAATCGTTTGTTTATTTGCATAGCCAATTAAGAGGCGATAGCCGGGTGAATCTAATACTTTCTCTTCCCTTAGTCAAGCGTCAACTGCTGCGCTACCAGAGTCCCATCACCGGTTTGTTTCCG
**************************************************(((.((((((.....((((.((.(((((((.(((((((((..(((((((.((.......)).))...)))))..)).((((.....))))........)))))))..((((((((((((((((....))))))))..........)))))))))))))))..))))))))))))..)))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 M024
male body		 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
...........................GCTGGACATCTACTATGGCAT...................................................................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................TTTCTCTTCCCTTAGTAGA.............................................. 19 2 1 2.00 2 0 0 0 2 0 0 0 0 0 0
............................CTGGACATCTACTATGGCATC..................................................................................................................................................................................................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
...............................GACATCTACTATGGCATCGTCAAG............................................................................................................................................................................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................CAAGCGTCAACTGCTGCGCTACC.......................... 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...TAACTACGAGGACACGGTGA............................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................GAAGCAGCTGGACATCTACTATGGC........................................................................................................................................................................................................................................................ 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.........CGAGGACACGGTGAAGCAGCT........................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................TGGACATCTACTATGGCATCGTC.................................................................................................................................................................................................................................................. 23 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
...........AGGACACGGTGAAGCAGCTTTT..................................................................................................................................................................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........AGGACACGGTGAAGCAGC......................................................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........................GCTGGACATCTACTATGGCA....................................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........GAGGACACGGTGAAGCAGCTGGACA................................................................................................................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......CTACGAGGACACGGTGAAG............................................................................................................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........ACGAGGACACGGTGAAGCAGC......................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
.......TACGAGGACACGGTGAAGCAGCTGGAC.................................................................................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
..........GAGGACACGGGGAGGCAGCT........................................................................................................................................................................................................................................................................ 20 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................GTCAACTGCTGCGCTACCAGAG...................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.TCTAACTACGAGGACACGGTG................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................TCGTCAAGCGTCAACTGC................................... 18 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0
........................................TACGGCATCGTGGAGGATTTA......................................................................................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................TGATTGTAGTCAGAAGCGTTT.................................................................................................................. 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
...........................GCTGGACATCTATTAT........................................................................................................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 0 0 1 0
.............................................CATCAGTGAGGATTAATA....................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0 0 0 0
...............................................................................................................................................................................................................................................................................GTCCCATCACCCGTT........ 15 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0
...............GACCGTGAAGCAGCTGGAC.................................................................................................................................................................................................................................................................... 19 2 6 0.17 1 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TGTTTAGTTACATAGCCAATT.............................................................................................. 21 2 6 0.17 1 0 0 0 0 0 1 0 0 0 0
.........CGCGGCCACGGTGAAGCA........................................................................................................................................................................................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 0 0 0 1
...............................................................................................................................................................................................TAGCCAACGAAGAGGCGATT................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0 0 0 0
....................................................................GTGGAGTCGTCTTTG................................................................................................................................................................................................................... 15 1 9 0.11 1 0 0 0 0 0 0 0 0 1 0
..........................................................................................................................ACGCATCGCACATCG............................................................................................................................................................. 15 1 11 0.09 1 0 0 0 0 0 0 0 0 1 0
.............................................................TATAACCTCGGAGCCGCC....................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................CGAAATGTCGTCGCC.............................................................................................................................................. 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

CAGATTGATGCTCCTGTGCCACTTCGTCGACCTGTAGATGATACCGTAGCCACTCCTAAATATATTGGAACCTCAGCAGAAACCCCGCCGGTTAATTCGTGGTTAACTGCCGCAGATAATTATTCGTAGCGTGTAGCGCTTTACAGCTGCGGGGTGTGAACTAACATTTGTCTTAGCAAACAAATAAACGTATCGGTTAATTCTCCGCTATCGGCCCACTTAGATTATGAAAGAGAAGGGAATCAGTTCGCAGTTGACGACGCGATGGTCTCAGGGTAGTGGCCAAACAAAGGC
**************************************************(((.((((((.....((((.((.(((((((.(((((((((..(((((((.((.......)).))...)))))..)).((((.....))))........)))))))..((((((((((((((((....))))))))..........)))))))))))))))..))))))))))))..)))...............************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
.........................GTCGACCTGTAGATGATACC......................................................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 1 0 0 0 0
..................................................................................................................................................................................................................................................................GAAGCGATGGTCTCAGGGTAG............... 21 1 1 1.00 1 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................ACGAAGCGATGGTCTCAGGGT................. 21 1 1 1.00 1 0 1 0 0 0 0 0
CAGATTGATGCTCCTGTGCCA................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................TCAGGTTAGTGGCAAAACACA... 21 3 5 0.60 3 0 0 0 0 0 3 0
.........................................................................................................................................................................................................................................................................TGGTCTCAGGATAGTG............. 16 1 2 0.50 1 0 0 0 0 1 0 0
..................................................................GGAAGCCCAGCAGAATCCCCG............................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 1 0 0 0
....................................................................AGCCTGAGCAGAATCCCCG............................................................................................................................................................................................................... 19 3 7 0.14 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................ACGCGATGGTCTGAC.................... 15 2 20 0.10 2 0 0 0 1 1 0 0
.........................................................................................................................................................................................................................................................................TGGTCTCAGTGTAGTGT............ 17 2 12 0.08 1 0 0 0 0 0 0 1
.................................................................TGGATCCTCAGCAGAA..................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 0 0 0 1
..............................................................................................................................................................................................................................................................................TCATGGTACTGGCCAA........ 16 2 13 0.08 1 0 0 0 1 0 0 0
......................................................................................................................................................................................................................................................................CGATGGTCTGTGGGTAG............... 17 2 15 0.07 1 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................ACCACGCGATGGTCTGAC.................... 18 3 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................ACGCGATGGTCTGACG................... 16 2 20 0.05 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................................................................CGACTCGATGGTCTGA..................... 16 2 20 0.05 1 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:7924056-7924349 - dsi_25455 GTCT-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TTTGGGGC----GGC---CAATTAAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTAA-----GA----G----------------------------------GCGATAGCCGG---GTGAATCTAATACTTTCTCTT------CCC-TTAGTCAAGCGTCAACTGCTGCGCTACCAGAGTCCCATCACCGGTTTGTTTCCG
droSec2 scaffold_3:3693299-3693594 - GTCTAAACTACGAGGACACGGTGAAGCAGCTAGACATCTACTATGGCATCGGTAAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGG--AGTCGTC----TTTGGGGC----GGC---CAATTAAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGTA---------------------TAGCCAATTAA-----GA----G----------------------------------GCGATAGCCGG---GTGAATCTAACACTTTCTCTT------CCC-TCAGTCAAGCGTCAATTGCTGCGCTACCAGAGTCCCATCACCGGTTTGTTTCCG
dm3 chr2L:8196340-8196633 - GTCC-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATTGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TGTGGGGC----GGC---CAATTGAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTAA-----GA----C----------------------------------GCGATAACCGG---GTGAATCTAACACTTTCTCTT------CCC-TCAGTCAAGCGTCAACTGCTGCGATACCAGAGTCCCATCACCGGTTTGTTTCCG
droEre2 scaffold_4929:17102393-17102686 - GTCT-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TGTGGGGC----AGG---CAATTGAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATAGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTAA-----GA----G----------------------------------GCGATAACCGG---GTGAATCTAACACTTTCTCTT------CCC-TCAGTCAAGCGACAACTGCTGCGGTACCAGAGTCCCATCACCGGCTTGTTTCCC
droYak3 2L:10828401-10828690 - GTCC-AACTATGAGGACACAGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TGTGGGGC----GAT---CAATTAAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGC-AAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTA------GC----C----------------------------------GCGATAACCGT---GTGAATCTAACACTTTCTCTT------T---AAAGTCAAGCGTCAACTGCTGCGCTACCAGAGTCCGATCACCGGTTTATTTCCC
droEug1 scf7180000409461:192987-193280 - GTCC-AATTATGAGGACACTGTGAAGCAGCTGGACATTTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---TCTGTG----TGTAGGGC----GGC---CAATTGAGC---ACCAATTGAA------------------------------------------AGC--------ATCTATTAATAA-----------GCATCGGACGTCGCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAAA--ATCGTTTGTTTA-TTTGCA---------------------CTGCCAATTAA-----GA----G----------------------------------GCGATAACCGG---GAGCTTCTAACACTTTCCCTT------CCC-GCAGTCAAGCGTCAGTTGCTTCGTTACCAGAGCCCCATTACCGGGCTGTTTCCC
droBia1 scf7180000302408:3241859-3242165 - GTCC-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA-------------------------------------------------------------------------------------CTT----GATTTATATAACCTTGGA---GCTCCT--TCTGTAGGGCTGACGGC---CAATTGAGC---ACCAATTGAA------------------------------------------GGC--------ATCTATTTATAA-----------GCATCGCACATCGCTAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGCGTCTCGTTTGTTTA-TTTGCA---------------------CTGCCAATCAA-----GT----A----------------------------------GAGATAACCTG---GAGATTCTAACACTTTCTCCT------CCC-GCAGTCAAGCGTCAGCTGCTGCGCTACCAGAGCCCCATCACCGGCCTGTTTCCC
droTak1 scf7180000415287:72090-72387 + ATCG-AACTACGAGGACACGGTGAAGCAGCTGGACATTTACTATGGCATCGGTGAGGA---------T-----------------------------------------------------------------------GGGATTC----GATTTATATAACCTTGGA---GCTGCG--TCTGTAGGGC----GGC---CAATTGAGCAGCACCAATTGAA------------------------------------------GGG--------GTCTATTAATAA-----------GCATT-------GC-AAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------CTGCCGAACGA-----AA----G----------------------------------ATGATAACT-------ACTACTAACACTTTCTCTT------TCCGCCAGTCAAGCGCCAGTTGCTGCGCTACCAGAGCCCCATCACCGGGCTGTTTCCC
droEle1 scf7180000491338:712240-712539 + CTCC-AACTACGAGGACACCGTGAAGCAGCTGGACATTTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGAACAGTTGTCTGTGTGTGGGGC----GGCCACCAATTGAGC---ACCAATTGAA------------------------------------------GGC--------GTCTATTAATAA-----------TCATC-------GCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------CTGCCAATCAA-----GC----G----------------------------------GCGATAATCGGTAGCAGCCTCTAACACTTTCTCTT------CCC-GCAGTTAAGCGCCAGTTGCTGCGCTACCAGAGCCCCATCACCGGGCTGTTTCCC
droRho1 scf7180000779492:33075-33360 + GTCC-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GCTGTC----TGTAGGGC----GGC---CAATTGAGA---ACCAATTGAA------------------------------------------GGC--------GTCTATTAATAA-----------TCATC-------GCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGA--CTCGTTTGTTTA-TTTGCA---------------------ATGCCAATCAA-----GA----G----------------------------------GCGATAACCGC---G-AGTTCTAACACTTTCTCTT------CCC-GCAGTGAAGCGTCAGTTGCTGCGCTACCAGAGCCCCATCACCGGGCTGTTCCCC
droFic1 scf7180000453925:881346-881639 - ATCC-AACTACGAGGACACTGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATGTAACATAGGA---GCTCTG--ACGGTGGGGCGGTTGGC---CAATTGATC---ACCAATTGAT------------------------------------------GGC--------GTCTATTAATAA-----------GCATC-------GCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGTGTGTCGTTTGTTTA-TTTGCA---------------------TTGCCAATCAA-----GT----A----------------------------------GCGATAACCGG---A-AATTCAAACACTTTCTCTT------CCC-GCAGTCAAGCGCCAATTGCTGCGCTACCAGAGTCCGATTACCGGACTGTTTCCC
droKik1 scf7180000302468:180623-180953 - ATCC-AACTACGAGGACACTGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA------TGGG-----GAAGGAT-------------CG-----TGTTG--------------------G----------------------GGGCTTTATATAACCTTGG---------------------C----GGC---CAATTGGGC---ACCAATTAAA-------------CGCT-----------GT------------GGCGTCT----GTCTATTAATAA-----------TCATC-------GCGAAATGTC-GACGCCCGACGCTTGCGCTTGATTGTAAACAGA--ATCGTCTGTTTA-TTTGCA---------------------TTGGCAATCGA-----CA----C--------------------ATTTTATTCACTGTGCGATAACCGC---C-AATTATAACACTTTCCCCCCAATCCCAC-ACAGTCAAGCGTCAATTGCTGCGCTACCAGAGCCCCATTACTGGACTGTTCCCG
droAna3 scaffold_12916:9541082-9541398 - TTCC-AATTACGAGGACACCGTCAAGCAGTTGGACATTTACTATGGCATCGGTAAGAA---------G-----CGGAGAC---------------------------------------------------------------TTT----AATTTATATAACCTTGGA---ACCCTC-----------------------AATTGGG--GCATCAATTGCG-----------GGCGATACGCGAACGC---------------GGC--------GTTTATTAATATATTCCCCCCCTGCATCGC-----GCAATCTGTT-GACGCCCCGG-------GTTATTTGTAAACAGA--TTCGTTTGTTTA-TGTGCA---------------------TAGCCAATCAA-TAACCG----A----------------------------------GAGATAATCGG---C-AATTCTAACACTTTCAC---------CC-ATAGTCAAACGACAACTGCTGCGGTACCAGAGCCCGATCACAGGATTGTTCCCG
droBip1 scf7180000396580:1494500-1494815 + CTCC-AATTATGAAGACACCGTCAAGCAGTTGGACATTTACTATGGCCTCGGTAAGAA---------G-----CGGAGAC---------------------------------------------------------------TTT----AATTTATATAACCTTGGA---ACCCTC-----------------------AATTGGG--GCATTTATTGCG-----------AGCGATACGCCAATGC---------------GGC--------GTTTATTAATATATTCCC-CCCTGCACC-----GCGCAAACTGTT-GACGCCCCAG-------GTTAATTGTAAACAGA--TTCGTTTGTTTA-TTTGCA---------------------TAGCTGTTCAA-TAAACG----A----------------------------------GAGATAACCGG---C-AATTCTAACACTTTCAC---------CC-TTAGTCAAACGACAACTGCTGCGGTACCAGAGCCCCATCACAGGATTGTTTCCG
dp5 4_group4:1631491-1631857 - dps_1660 ATCT-AACTACGAGGACACTGTAAAGCAGCTAGACATTTACTATGGCATCGGTAAGCACTTTGACAGG-----AAAAGAC---------------------------------------------------------------AT-----TATTTATATAACCTTGGA---GCTGGC----TGTAGGGC----AGC---CAATTGAGC---ATCAATTAAT-ACCACCAAACGACGCT-----------ATGC--TGA-----CAC--------GTCTATTAATAA-----------GCATC-------GCGAAATGCC-TTCGCTCC----------TCAATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TTTGCTATCAGACAAACGCAAAGACGCTACCACTGCCACCGACATTTTGT--AATAAGAGATAACATC---G-GAATGTAAGACTCTCTCTC------TCC-ACAGTAAAACGGCAGCTATTGCGCTATCAGAGCCCCATCACTGGCCTGTTCCCA
droPer2 scaffold_10:634881-635245 - ATCT-AACTACGAGGACACTGTAAAGCAGCTAGACATTTACTATGGCATCGGTAAGCACTTTGACAGG-----AAAAGAC---------------------------------------------------------------AT-----TATTTATATAACCTTGGA---GCTGGC----TGTAGGGC----AGC---CAATTGAGC---ATCAATTAAT-ACCACCAAACGACGCT-----------ATGC--TGA-----CAC--------GTCTATTAATAA-----------GCATC-------GCGAAATGCC-TTCGCTCC----------TCAATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TTTGCTATCAGACAAACGCAAAGACGCTACCACTGCCACTGACATTTTGT--AATAAGAGATAACATC---G-GAATGTAACACTCTCTCT--------CC-ACAGTAAAACGGCAGCTATTGCGCTATCAGAGCCCCATCACTGGCCTGTTCCCA
droWil2 scf2_1100000004516:2867426-2867857 - CTCA-AACTATGAGGATACGGTCAAGCAATTGGATATTTACTATGGCATTGGTATGCACACTTGTAGAATGTAGCAAGAT-------------CC-----CAATGAGATGTGAACGCAATGGAGGAGGCGACAGAGAAGTGCAAAAGA--TTTTTATATAACCTTGGA---AACGTC--ACTGTAGGGCA---GGC---CAATTAAGTG--ACCAATTAAATGCCACGACTCGTTGCG------------GGC--TGA-----CGC--------TGCTATTTATAA-----------ATATC-------GCGAAATATTTGCCGCTCTTCT-----TCTTCATTGTAAACAT---TTCGTTCGTTTTGTTTAGATTTGTCAACAATTCTTTTGTTTTTGTTTCTTGT-TATCGCTAAAATAACA-AACTGCCGCTGAC--------------TTGATAATT--------ATTC--TCACTTTCCCCT-----TCTC-ACAGTGAAACGACAATTGCTGCGCTTCCAGAGTCCCATAACAGGTCTATTTCCT
droVir3 scaffold_12963:9708666-9708900 - CATC-AACTACGAAGACACAGTCAAGCAGCTGGACATATACTATGGCATCGGTAAATA---------G-----CGTA-ATTAGGCGGAACCACCAATCTTTCTCG--------------------C-----------ATTGCCCTC----ACTTTATATAACCTTGGA---GTAGTC--TGTGTAGGGC----AGC---CAATTTAGC---ATCAATTGTT-GCCAC----------------AACGCTGCGTCTCATCGCGTCGCGTCTTTAATTCTATTAATAA-----------GCATT-----TTGCAAAATATC-GGC---CCACA------TTTTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6500:1549478-1549630 + CATC-AACTATGAGGACACGGTCAAGCAGCTGGACATTTACTATGGCATCGGTAATTA---------G-----CAAAAATCAAACGGAAGCATCATTCTCTATTG--------------------A-----------GCTGCATTC----GTTTTATATAACCTTGGC---GGCGTC--TGTGTAGGGC----AGC---CAATTTAGC---TTCAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15252:12096672-12096818 + TATT-AACTATGAGGACACGGTCAAGCAGCTGGACATTTACTATGGCATCGGTGAGTT---------G-----CAC-------------------------------------GAGCAATTCAAGA-------GCAAATTGCACTTGATTTTTTTATATAACCTTGGC--AGGCGTC--TGTGTAGGGC----AGC---CAATTAAGCA--ACCAATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GTCT-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TTTGGGGC----GGC---CAATTAAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTAA-----GA----G----------------------------------GCGATAGCCGG---GTGAATCTAATACTTTCTCTT------CCC-TTAGTCAAGCGTCAACTGCTGCGCTACCAGAGTCCCATCACCGGTTTGTTTCCGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
............................GCTGGACATCTACTATGGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.00300000000000003000
.............................CTGGACATCTACTATGGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000000000002000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGTCAACTGCTGCGCTACC..........................2311.00100010000000000000
...T-AACTACGAGGACACGGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
......................GAAGCAGCTGGACATCTACTATGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..........CGAGGACACGGTGAAGCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
..............................TGGACATCTACTATGGCATCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000000000010000
............AGGACACGGTGAAGCAGCTTTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
............AGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
............................GCTGGACATCTACTATGGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...........GAGGACACGGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
.......CTACGAGGACACGGTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000000000001000
.........ACGAGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000001000000
........TACGAGGACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000001000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACTGCTGCGCTACCAGAG......................2211.00110000000000000000
.TCT-AACTACGAGGACACGGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
droSec2
GTCTAAACTACGAGGACACGGTGAAGCAGCTAGACATCTACTATGGCATCGGTAAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGG--AGTCGTC----TTTGGGGC----GGC---CAATTAAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGTA---------------------TAGCCAATTAA-----GA----G----------------------------------GCGATAGCCGG---GTGAATCTAACACTTTCTCTT------CCC-TCAGTCAAGCGTCAATTGCTGCGCTACCAGAGTCCCATCACCGGTTTGTTTCCGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............AGGACACGGTGAAGCAGCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000
..................CGGTGAAGCAGCTAGACATCTACTAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100
............AGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0011000
...........GAGGACACGGTGAAGCAGCTAGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
............................................................................................................................................................................................C----GGC---CAATTAAGC---ACCAATTG............................................................................................................................................................................................................................................................................................................................................2111.0010001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCCCATCACCGGTTTGTT....2111.0011000
...............ACACGGTGAAGCAGCTAGACATT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..........CGAGGACACGGTGAAGCAGCTAGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0011000
.............GGACACGGTGAAGCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................TAGACATCTACTATGGCATCGTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010
dm3
GTCC-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATTGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TGTGGGGC----GGC---CAATTGAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTAA-----GA----C----------------------------------GCGATAACCGG---GTGAATCTAACACTTTCTCTT------CCC-TCAGTCAAGCGTCAACTGCTGCGATACCAGAGTCCCATCACCGGTTTGTTTCCGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
........TACGAGGACACGGTGAAGCAGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2616.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000001200000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
...........GAGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1914.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000010000
...........GAGGACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.TCC-AACTACGAGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................CACGGTGAAGCAGCTGGACATCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
............AGGACACGGTGAAGCAGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TACGAGGACACGGTGAAGCAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACTACGAGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........GAGGACACGGTGAAGCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000000000000
...............ACACGGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........ACGAGGACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.................ACGGTGAAGCAGCTGGACATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.........ACGAGGACACGGTGAAGCAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................ACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
............AGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000
...........................AGCTGGACATCTACTATGGCATAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGGACACGGTGAAGCAGCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGTGAAGCAGCTGGACATCTACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...C-AACTACGAGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GACATCTACTATGGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................TGGA---GTCGTC----TGTGGGGC----GGC---................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....................GTGAAGCAGCTGGACATCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGATACCAGAGTCCC..................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
................CACGGTGAAGCAGCTGGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........TACGAGGACACGGTGAAGCAGCTGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................ACGGTGAAGCAGCTGGACAC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCATCACCGGTTTGTTTCC.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................GAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----..................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGGACACGGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..CC-AACTACGAGGACACGGTGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGACACGGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................ATTAA-----GA----C----------------------------------GCGATAACCGG---GT...................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
..........CGAGGACACGGTGAAGCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGGACACGGTGAAGCAGCTGGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................A----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GT..........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
........TACGAGGACACGGTGAAGCAGCTGGACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........CGAGGACACGGTGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACACGGTGAAGCAGCTGGACATCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACTACGAGGACACGGTGAAGCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......ACTACGAGGACACGGTGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......ACTACGAGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...C-AACTACGAGGACACGGTGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....AACTACGAGGACACGGTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............ACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACTACGAGGACACGGTGAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATCACCGGTTTGTTTC..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.................ACGGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
................CACGGTGAAGCAGCTGGACATCTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.............GGACACGGTGAAGCAGCTGGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........GAGGACACGGTGAAGCAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGGACACGGTGAAGCAGCTGGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................ACCTTGGA---GTCGTC----TGTGGGGC----GGC---................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.....AACTACGAGGACACGGTGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
......ACTACGAGGACACGGTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....AACTACGAGGACACGGTGAAGCAGCTATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TCC-AACTACGAGGACACGGTGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CGGTGAAGCAGCTGGACATCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GGACACGGTGAAGCAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
........TACGAGGACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACTACGAGGACACGGTGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......ACTACGAGGACACGGTGAAGCAGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
.....AACTACGAGGACACGGTGAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................ACGGTGAAGCAGCTGGACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAGTCCCATCACCGGT.........2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
..........CGAGGACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.............GGACACGGTGAAGCAGCTGGGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................CACGGTGAAGCAGCTGGACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............AGGACACGGTGAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GACACGGTGAAGCAGCTGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GTCT-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TGTGGGGC----AGG---CAATTGAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGCGAAATGTC-GACGCCCCACA------CTTGATAGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTAA-----GA----G----------------------------------GCGATAACCGG---GTGAATCTAACACTTTCTCTT------CCC-TCAGTCAAGCGACAACTGCTGCGGTACCAGAGTCCCATCACCGGCTTGTTTCCCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...........GAGGACACGGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0021000100
..CT-AACTACGAGGACACGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000100
............AGGACACGGTGAAGCAGCT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGCGGTACCAGAGTCCCA.................2311.0011000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCATCACCGGCTTGTTTCCC2111.0010100000
.............GGACACGGTGAAGCAGCTGGACATC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACAACTGCTGCGGTA............................1911.0011000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTCCCATCACCGGCTTGT.....2011.0011000000
......ACTACGAGGACACGGTGAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
droYak3
GTCC-AACTATGAGGACACAGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GTCGTC----TGTGGGGC----GAT---CAATTAAGC---ACCAATTGAC------------------------------------------GGC--------GTCTATTAATAA-----------GCATCGCACATCGC-AAATGTC-GACGCCCCACA------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TAGCCAATTA------GC----C----------------------------------GCGATAACCGT---GTGAATCTAACACTTTCTCTT------T---AAAGTCAAGCGTCAACTGCTGCGCTACCAGAGTCCGATCACCGGTTTATTTCCCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTCAACTGCTGCGCTACCAGAGT.....................27119.0019000000000019
.........ATGAGGACACAGTGAAGCAGCTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100000010000
..................................................................................................................................................................................................................................................................................................................ATCGC-AAATGTC-GACGCCCC...............................................................................................................................................................................................................................2011.00101000000000
.....................TGAAGCAGCTGGACATCTAC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
.....AACTATGAGGACACAGTGAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................................................................................................TTATATAACCTTGGA---GTCGTC----TGT...............................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGCGCTACCAGAGTCCGATC...............2411.00100000010000
.........ATGAGGACACAGTGAAGCAGCTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGTCAACTGCTGCGCTACCAGAGG.....................2711.00100000000001
droEug1
GTCC-AATTATGAGGACACTGTGAAGCAGCTGGACATTTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---TCTGTG----TGTAGGGC----GGC---CAATTGAGC---ACCAATTGAA------------------------------------------AGC--------ATCTATTAATAA-----------GCATCGGACGTCGCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAAA--ATCGTTTGTTTA-TTTGCA---------------------CTGCCAATTAA-----GA----G----------------------------------GCGATAACCGG---GAGCTTCTAACACTTTCCCTT------CCC-GCAGTCAAGCGTCAGTTGCTTCGTTACCAGAGCCCCATTACCGGGCTGTTTCCCSizeHit CountTotal NormTotal
No Reads
droBia1
GTCC-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA-------------------------------------------------------------------------------------CTT----GATTTATATAACCTTGGA---GCTCCT--TCTGTAGGGCTGACGGC---CAATTGAGC---ACCAATTGAA------------------------------------------GGC--------ATCTATTTATAA-----------GCATCGCACATCGCTAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGCGTCTCGTTTGTTTA-TTTGCA---------------------CTGCCAATCAA-----GT----A----------------------------------GAGATAACCTG---GAGATTCTAACACTTTCTCCT------CCC-GCAGTCAAGCGTCAGCTGCTGCGCTACCAGAGCCCCATCACCGGCCTGTTTCCCSizeHit CountTotal NormTotal
No Reads
droTak1
ATCG-AACTACGAGGACACGGTGAAGCAGCTGGACATTTACTATGGCATCGGTGAGGA---------T-----------------------------------------------------------------------GGGATTC----GATTTATATAACCTTGGA---GCTGCG--TCTGTAGGGC----GGC---CAATTGAGCAGCACCAATTGAA------------------------------------------GGG--------GTCTATTAATAA-----------GCATT-------GC-AAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------CTGCCGAACGA-----AA----G----------------------------------ATGATAACT-------ACTACTAACACTTTCTCTT------TCCGCCAGTCAAGCGCCAGTTGCTGCGCTACCAGAGCCCCATCACCGGGCTGTTTCCCSizeHit CountTotal NormTotal
No Reads
droEle1
CTCC-AACTACGAGGACACCGTGAAGCAGCTGGACATTTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGAACAGTTGTCTGTGTGTGGGGC----GGCCACCAATTGAGC---ACCAATTGAA------------------------------------------GGC--------GTCTATTAATAA-----------TCATC-------GCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------CTGCCAATCAA-----GC----G----------------------------------GCGATAATCGGTAGCAGCCTCTAACACTTTCTCTT------CCC-GCAGTTAAGCGCCAGTTGCTGCGCTACCAGAGCCCCATCACCGGGCTGTTTCCCSizeHit CountTotal NormTotal
No Reads
droRho1
GTCC-AACTACGAGGACACGGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATATAACCTTGGA---GCTGTC----TGTAGGGC----GGC---CAATTGAGA---ACCAATTGAA------------------------------------------GGC--------GTCTATTAATAA-----------TCATC-------GCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGA--CTCGTTTGTTTA-TTTGCA---------------------ATGCCAATCAA-----GA----G----------------------------------GCGATAACCGC---G-AGTTCTAACACTTTCTCTT------CCC-GCAGTGAAGCGTCAGTTGCTGCGCTACCAGAGCCCCATCACCGGGCTGTTCCCCSizeHit CountTotal NormTotal
No Reads
droFic1
ATCC-AACTACGAGGACACTGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA----------------------------------------------------------------------------------------------TTTATGTAACATAGGA---GCTCTG--ACGGTGGGGCGGTTGGC---CAATTGATC---ACCAATTGAT------------------------------------------GGC--------GTCTATTAATAA-----------GCATC-------GCGAAATGTC-GACGCCCCAAG------CTTGATTGTAAACAGTGTGTCGTTTGTTTA-TTTGCA---------------------TTGCCAATCAA-----GT----A----------------------------------GCGATAACCGG---A-AATTCAAACACTTTCTCTT------CCC-GCAGTCAAGCGCCAATTGCTGCGCTACCAGAGTCCGATTACCGGACTGTTTCCCSizeHit CountTotal NormTotal
No Reads
droKik1
ATCC-AACTACGAGGACACTGTGAAGCAGCTGGACATCTACTATGGCATCGGTGAGGA------TGGG-----GAAGGAT-------------CG-----TGTTG--------------------G----------------------GGGCTTTATATAACCTTGG---------------------C----GGC---CAATTGGGC---ACCAATTAAA-------------CGCT-----------GT------------GGCGTCT----GTCTATTAATAA-----------TCATC-------GCGAAATGTC-GACGCCCGACGCTTGCGCTTGATTGTAAACAGA--ATCGTCTGTTTA-TTTGCA---------------------TTGGCAATCGA-----CA----C--------------------ATTTTATTCACTGTGCGATAACCGC---C-AATTATAACACTTTCCCCCCAATCCCAC-ACAGTCAAGCGTCAATTGCTGCGCTACCAGAGCCCCATTACTGGACTGTTCCCGSizeHit CountTotal NormTotal
No Reads
droAna3
TTCC-AATTACGAGGACACCGTCAAGCAGTTGGACATTTACTATGGCATCGGTAAGAA---------G-----CGGAGAC---------------------------------------------------------------TTT----AATTTATATAACCTTGGA---ACCCTC-----------------------AATTGGG--GCATCAATTGCG-----------GGCGATACGCGAACGC---------------GGC--------GTTTATTAATATATTCCCCCCCTGCATCGC-----GCAATCTGTT-GACGCCCCGG-------GTTATTTGTAAACAGA--TTCGTTTGTTTA-TGTGCA---------------------TAGCCAATCAA-TAACCG----A----------------------------------GAGATAATCGG---C-AATTCTAACACTTTCAC---------CC-ATAGTCAAACGACAACTGCTGCGGTACCAGAGCCCGATCACAGGATTGTTCCCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCTGCGGTACCAGAGCCCG..................2213.003000003
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTACCAGAGCCCGATC...............1912.002200000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCGGTACCAGAGCCCG..................1912.002100001
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCCGATCACAGGATTGTT....2211.001100000
............AGGACACCGTCAAGCAGTTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
...C-AATTACGAGGACACCGTCAAGCAGT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
......ATTACGAGGACACCGTCAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACGACAACTGCTGCGGTACCAGAGCCC...................2911.001100000
................CACCGTCAAGCAGTTGGACAT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAACGACAACTGCTGCGGTACCA.........................2611.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTGCGGTACCAGAGCCCGATCA..............2411.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCAGAGCCCGATCACAGGATTGTTCC..2811.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAACTGCTGCGGTA............................1911.001000001
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAACTGCTGCGGTACCAGA.......................2311.001000001
..............GACACCGTCAAGCAGTTGGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGACAACTGCTGCGGTACCAGA.......................2411.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGCCCGATCACAGGATTGTTC...2311.001000001
.......TTACGAGGACACCGTCAAGCAGTTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001010000
......ATTACGAGGACACCGTCAAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
.....AATTACGAGGACACCGTC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
droBip1
CTCC-AATTATGAAGACACCGTCAAGCAGTTGGACATTTACTATGGCCTCGGTAAGAA---------G-----CGGAGAC---------------------------------------------------------------TTT----AATTTATATAACCTTGGA---ACCCTC-----------------------AATTGGG--GCATTTATTGCG-----------AGCGATACGCCAATGC---------------GGC--------GTTTATTAATATATTCCC-CCCTGCACC-----GCGCAAACTGTT-GACGCCCCAG-------GTTAATTGTAAACAGA--TTCGTTTGTTTA-TTTGCA---------------------TAGCTGTTCAA-TAAACG----A----------------------------------GAGATAACCGG---C-AATTCTAACACTTTCAC---------CC-TTAGTCAAACGACAACTGCTGCGGTACCAGAGCCCCATCACAGGATTGTTTCCGSizeHit CountTotal NormTotal
No Reads
dp5
ATCT-AACTACGAGGACACTGTAAAGCAGCTAGACATTTACTATGGCATCGGTAAGCACTTTGACAGG-----AAAAGAC---------------------------------------------------------------AT-----TATTTATATAACCTTGGA---GCTGGC----TGTAGGGC----AGC---CAATTGAGC---ATCAATTAAT-ACCACCAAACGACGCT-----------ATGC--TGA-----CAC--------GTCTATTAATAA-----------GCATC-------GCGAAATGCC-TTCGCTCC----------TCAATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TTTGCTATCAGACAAACGCAAAGACGCTACCACTGCCACCGACATTTTGT--AATAAGAGATAACATC---G-GAATGTAAGACTCTCTCTC------TCC-ACAGTAAAACGGCAGCTATTGCGCTATCAGAGCCCCATCACTGGCCTGTTCCCASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........ACGAGGACACTGTAAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000020
.........ACGAGGACACTGTAAAGCAGCTAGACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020100000010
.........................................................................................................................................................................................................................................................................................................GCATC-------GCGAAATGCC-TTCGCT.................................................................................................................................................................................................................................2111.0010100000000
..............................TAGACATTTACTATGGCATCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................AGCAGCTAGACATTTACTATGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010010000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGCAGCTATTGCGCTATCA.........................2211.0010000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGACGCTACCACTGCCAC.....................................................................................................................2111.0010100000000
.......CTACGAGGACACTGTAAAGCAGCTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000010
......................AAAGCAGCTAGACATTTACTATGGCATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010010000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGCCCCATCACTGGCCTGTTCCCA2911.0010001000000
...........................................................................................................................................................................................................................................................GC--TGA-----CAC--------GTCTATTAATA..........................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
ATCT-AACTACGAGGACACTGTAAAGCAGCTAGACATTTACTATGGCATCGGTAAGCACTTTGACAGG-----AAAAGAC---------------------------------------------------------------AT-----TATTTATATAACCTTGGA---GCTGGC----TGTAGGGC----AGC---CAATTGAGC---ATCAATTAAT-ACCACCAAACGACGCT-----------ATGC--TGA-----CAC--------GTCTATTAATAA-----------GCATC-------GCGAAATGCC-TTCGCTCC----------TCAATTGTAAACAGA--ATCGTTTGTTTA-TTTGCA---------------------TTTGCTATCAGACAAACGCAAAGACGCTACCACTGCCACTGACATTTTGT--AATAAGAGATAACATC---G-GAATGTAACACTCTCTCT--------CC-ACAGTAAAACGGCAGCTATTGCGCTATCAGAGCCCCATCACTGGCCTGTTCCCASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGAGATAACATC---G-GAATGT.............................................................................2112.002200000
droWil2
CTCA-AACTATGAGGATACGGTCAAGCAATTGGATATTTACTATGGCATTGGTATGCACACTTGTAGAATGTAGCAAGAT-------------CC-----CAATGAGATGTGAACGCAATGGAGGAGGCGACAGAGAAGTGCAAAAGA--TTTTTATATAACCTTGGA---AACGTC--ACTGTAGGGCA---GGC---CAATTAAGTG--ACCAATTAAATGCCACGACTCGTTGCG------------GGC--TGA-----CGC--------TGCTATTTATAA-----------ATATC-------GCGAAATATTTGCCGCTCTTCT-----TCTTCATTGTAAACAT---TTCGTTCGTTTTGTTTAGATTTGTCAACAATTCTTTTGTTTTTGTTTCTTGT-TATCGCTAAAATAACA-AACTGCCGCTGAC--------------TTGATAATT--------ATTC--TCACTTTCCCCT-----TCTC-ACAGTGAAACGACAATTGCTGCGCTTCCAGAGTCCCATAACAGGTCTATTTCCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...A-AACTATGAGGATACGGTCAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATTGCTGCGCTTCCAGA.......................2111.00100010
..CA-AACTATGAGGATACGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00101000
...........GAGGATACGGTCAAGCAATTGGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
droVir3
CATC-AACTACGAAGACACAGTCAAGCAGCTGGACATATACTATGGCATCGGTAAATA---------G-----CGTA-ATTAGGCGGAACCACCAATCTTTCTCG--------------------C-----------ATTGCCCTC----ACTTTATATAACCTTGGA---GTAGTC--TGTGTAGGGC----AGC---CAATTTAGC---ATCAATTGTT-GCCAC----------------AACGCTGCGTCTCATCGCGTCGCGTCTTTAATTCTATTAATAA-----------GCATT-----TTGCAAAATATC-GGC---CCACA------TTTTACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................TGGACATATACTATGGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002000000000000000011000000000000000000000000000000000000000000000
...........................AGCTGGACATATACTATGGCAT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000100000000000000000000000000000000000000000000000
.............AGACACAGTCAAGCAGCTGGACATATA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................GGAACCACCAATCTTTCTCG--------------------C-----------AT............................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000001000000000000000000000000000000000000000000000000
.................ACAGTCAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000100000000000000000000000000000000000000000000
............AAGACACAGTCAAGCAGCTGGAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001010000000000000000000000000000000000000000000000000000000000000
.........ACGAAGACACAGTCAAGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
CATC-AACTATGAGGACACGGTCAAGCAGCTGGACATTTACTATGGCATCGGTAATTA---------G-----CAAAAATCAAACGGAAGCATCATTCTCTATTG--------------------A-----------GCTGCATTC----GTTTTATATAACCTTGGC---GGCGTC--TGTGTAGGGC----AGC---CAATTTAGC---TTCAATT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.........ATGAGGACACGGTCAAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000001
...................GGTCAAGCAGCTGGACATTTACTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.ATC-AACTATGAGGACACGGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
droGri2
TATT-AACTATGAGGACACGGTCAAGCAGCTGGACATTTACTATGGCATCGGTGAGTT---------G-----CAC-------------------------------------GAGCAATTCAAGA-------GCAAATTGCACTTGATTTTTTTATATAACCTTGGC--AGGCGTC--TGTGTAGGGC----AGC---CAATTAAGCA--ACCAATTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 01:48 PM