ID:

dsi_25450

 Coordinate:

3r:17709633-17709782 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-13.5 -12.8 -12.8 -12.6

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CATCAGGATGTTCATCTGGGACTGGTTCACCGGAGTGCTGGGATACCTGGGTAAGCAACGTCGCCATCGCCGACCTTGTGCCTTGGGGCGGCGTTTCTTGAGCGAGTGCCAACAAGGCAGCCGCACAAAAGAAACCCAAATTCGACGGCTGTACAGCGGAGGTCGCGGTGATAGCTCTAAACGTGCGATTATCTCGAAATCTAGAGGTTAAACGGTGTTTATAAGGTGTCGAAAGCTTATAACTTTCCAT
************************************************************************************************************************************........(((...((((((...(((.....)))....))))))...................)))**************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
................TGGGACTGGTTCACCGGAGTGCTGGGA............................................................................................................................................................................................................... 27 0 1 3.00 3 0 1 0 1 0 1 0 0 0 0
....................................................................................................................................AACCCAAATTCGACGGCTGC.................................................................................................. 20 1 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................................................................................................................................AACCCAAATTCGACGGCTGT.................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
............CATCTGGGACTGGTTCACC........................................................................................................................................................................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........TCATCTGGGACTGGTTCACCGGAGTGC.................................................................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................TGGGTGAGCAGCGTCGCCATC...................................................................................................................................................................................... 21 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................AGCTCTAAACGTGCGATTATCTCGAA.................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAGGTGTCGAAGGCTTATAACT...... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0
........................................................................................................................................................ACGGCGGAGGTCGCG................................................................................... 15 1 3 1.00 3 0 0 0 0 0 1 0 0 2 0
...CAGGATGTTCATCTGGGACT................................................................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...........................CACCGGAGTGCTGGGATACCT.......................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............CTGGGACTGGTTCACCGGA........................................................................................................................................................................................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........TGTTCATCTGGGACTGGTTCACCGGA........................................................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............ATCTGGGACTGGTTCACCGGA........................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................................................................................................................CTGTACAGCGGAGGTCGCGGT................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..........................TCACCGGAGTGCTGGCATACCTGG........................................................................................................................................................................................................ 24 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................CGGTGATAGCTCTAAACGTGC................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
..............TCTGGGACTGGTTCACCGGAGTGCTG.................................................................................................................................................................................................................. 26 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
..............TCTGGGACTGGTTCACC........................................................................................................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...........TCATCTGGGACTGGTTCACCGGAG....................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..TCAGGATGTTCATCTGGGACT................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
CATCAGGATGTTCATCTGGGACTG.................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................AACGGTGTTTATAAGGTG...................... 18 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....AGGATGTTCATCTGGGACTGGTTCAC............................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
........GGTTCATCTGGGACTCGTTCACC........................................................................................................................................................................................................................... 23 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0
.....GGATGTTCATCTTGGACT................................................................................................................................................................................................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0 0 0 0
.............................................................................................TTTCTTGTGCGAGGGCCA........................................................................................................................................... 18 2 4 0.25 1 0 0 0 0 0 0 0 0 0 1
.......................................................................................................................................................CACGGCGGAGGTCGCG................................................................................... 16 2 20 0.20 4 0 0 0 2 0 1 0 0 1 0
........................................................................................................................................................ACGCCGGAGGTCGCGG.................................................................................. 16 2 20 0.15 3 0 0 0 0 0 0 0 0 0 3
.......................................................................................................................................................CACGGCGGAGGTCGCGG.................................................................................. 17 2 16 0.13 2 0 0 0 0 0 1 0 0 1 0
.........................................................................................................................................................CGGCGGAGGTCGCGG.................................................................................. 15 1 20 0.10 2 0 0 0 0 0 0 0 0 1 1
...CATGATGTTCATCTGAG...................................................................................................................................................................................................................................... 17 2 13 0.08 1 0 0 1 0 0 0 0 0 0 0
..............................................................................GCCCTTGGGGCGGCGTTTTT........................................................................................................................................................ 20 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1
.........GTTCATCTGTGACTGGA................................................................................................................................................................................................................................ 17 2 18 0.06 1 0 0 0 0 0 1 0 0 0 0
..............................CGGAGTGATGGGTTAC............................................................................................................................................................................................................ 16 2 19 0.05 1 0 0 0 0 0 0 0 0 1 0
...............................................................................GCCTTGCGGCGGCGGT........................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................GTCCTAGCTCTAAACG................................................................... 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTAGTCCTACAAGTAGACCCTGACCAAGTGGCCTCACGACCCTATGGACCCATTCGTTGCAGCGGTAGCGGCTGGAACACGGAACCCCGCCGCAAAGAACTCGCTCACGGTTGTTCCGTCGGCGTGTTTTCTTTGGGTTTAAGCTGCCGACATGTCGCCTCCAGCGCCACTATCGAGATTTGCACGCTAATAGAGCTTTAGATCTCCAATTTGCCACAAATATTCCACAGCTTTCGAATATTGAAAGGTA
****************************************************........(((...((((((...(((.....)))....))))))...................)))************************************************************************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
.....................................................................................................................................TGGGTTTAAGCTGCCGACATG................................................................................................ 21 0 1 2.00 2 0 0 0 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................AGTATTCCACAGATTTCTAATAT......... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.........CAAGTAGACCCTGACCAAGT............................................................................................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................TTTCTTTGGGTTTAAGCTGCC...................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..AGTCCTACGAGTAGACCCTG.................................................................................................................................................................................................................................... 20 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
............................................................................................................................................................................TCGAGATTTGCACGCTAATAG......................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................CAGCGGCTGGAACACGGAACC.................................................................................................................................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.................................................................TAGCGGCTGGAACACGGAACC.................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
....................................................TTCGTTGCAGCGATA....................................................................................................................................................................................... 15 1 8 0.63 5 0 2 2 0 0 0 0 0 1 0
..............................................................................................................................................GCTTCCGACATTTCGCCGCCA....................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................................................................AAAGAGCTTTAGATGTCCGA......................................... 20 3 5 0.20 1 0 0 0 0 0 0 0 1 0 0
...................................................................................................................................TATGGGTTTAAGCTG........................................................................................................ 15 1 10 0.20 2 0 0 2 0 0 0 0 0 0 0
..................................ACCGACCCCATGGACCCATT.................................................................................................................................................................................................... 20 3 6 0.17 1 0 0 0 0 0 0 1 0 0 0
.....................................................................................................................................................................................GCACGCTAGTCGAGCTT.................................................... 17 2 17 0.06 1 0 0 0 0 0 0 0 0 1 0
..AGTCCTAAGAGTAGCCCCT..................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0 0
..................................................................AGCGGCTGGAACAAGTAGC..................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Generated: 04/24/2015 at 02:28 AM