ID:

dsi_25441

 Coordinate:

2r:9443752-9443901 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

Antisense to CDS [2r_9443836_9444195_-]; Antisense to three_prime_UTR [2r_9443289_9443835_-]; Antisense to exon [2r_9443289_9444195_-]

No Repeatable elements found

Sense Strand Reads

AGTAATTCGTTAGTTGAAGATTGCCTCCACTGGGGGAGCACACCGATGAGATTACGCGACAACAATATTCGTGTATTCCAGGCTACTGAATAACCCGATTAAACTGTAAACAATATTTGGAAATAGAGCGGAACTTAGTCGCGCGATGCTCCGATTATAGTCAGAATGTACATGAAGATATTGATAATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATGTACTCCTCGGGACTGATAGAGTACTTGTGCT
**************************************************.((..((((((.((((((((((((((....((((............................(((.(((((......(((..((...))..))).....))))).))))))).....)))))))))..)))))....))))...))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
.......................................ACACCGATGAGATTACGCGAC.............................................................................................................................................................................................. 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0
..........................................................................................................................ATAGAGCCGAACTTAGTAGT............................................................................................................ 20 3 2 0.50 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................TGATGTCCAGGTAGAGGTTTAGTGC......................................... 25 1 2 0.50 1 0 0 0 1 0 0 0 0 0
..................GATTGCCTCCATTGGG........................................................................................................................................................................................................................ 16 1 2 0.50 1 0 0 1 0 0 0 0 0 0
...................................................................................................................TTTGGAAATAGAGCGGATT.................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1 0 0 0
........GTTACTTGAAGATTGC.................................................................................................................................................................................................................................. 16 1 5 0.20 1 0 0 0 0 0 0 1 0 0
............................................GATGTGATTACGCGA............................................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 0 0 0 0 1 0
...........................................................................................................................................................................................TGACCAGGTAGAGGT................................................ 15 1 6 0.17 1 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................GTCAGAATGAACATCAAG......................................................................... 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0
........................................GACCGATGCGATTACACGA............................................................................................................................................................................................... 19 3 10 0.10 1 0 0 0 0 1 0 0 0 0
...................................................................................................................................................GCTGGGATTATAGTCAGGA.................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0 0 0 0
..........................................................................ATTCGAGGCTACGGAAGAA............................................................................................................................................................. 19 3 16 0.06 1 0 0 0 0 0 0 0 0 1
.........................................................................................................................................................................................AATGTCCAAGAAGAGGTTT.............................................. 19 2 20 0.05 1 0 0 0 0 0 0 1 0 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
TCATTAAGCAATCAACTTCTAACGGAGGTGACCCCCTCGTGTGGCTACTCTAATGCGCTGTTGTTATAAGCACATAAGGTCCGATGACTTATTGGGCTAATTTGACATTTGTTATAAACCTTTATCTCGCCTTGAATCAGCGCGCTACGAGGCTAATATCAGTCTTACATGTACTTCTATAACTATTACAGGTCCATCTCCAAATCACGGCGTTTCTACATGAGGAGCCCTGACTATCTCATGAACACGA
**************************************************.((..((((((.((((((((((((((....((((............................(((.(((((......(((..((...))..))).....))))).))))))).....)))))))))..)))))....))))...))..))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M023
head
 O001
Testis
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
..............................................................................................................................................................TCAGTCTTACATGTACTTCTATAAC................................................................... 25 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGGAGCCCTGACTATCTCATGAACACGA 28 0 1 3.00 3 3 0 0 0 0 0 0 0 0 0 0
............................................................................AGGTCCGATGACTTATTGGGC......................................................................................................................................................... 21 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
........................................GTGGCTACTCTAATGCGCTGTTGT.......................................................................................................................................................................................... 24 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
................................................................................................................................................................................................TCCATCTCCAAATCACGGCGT..................................... 21 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................CAGTCTTACATGTACTTCTATAACTA................................................................. 26 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CAGGTCCATCTCCAAATCACGG........................................ 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................AAACCTTTATCTCGCCTTGAATC................................................................................................................ 23 0 1 2.00 2 0 0 0 0 0 2 0 0 0 0 0
............................................................................................................................................................................................CAGGTCCATCTCCAAATCACGGCG...................................... 24 0 1 2.00 2 0 0 0 0 2 0 0 0 0 0 0
..............................................................................................................................................................TCAGTCTTACATGTACTTCTA....................................................................... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................GAGGCTAATATCAGTCTTACATGTACTT.......................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....................................................................AGCACATAAGGTCCGATG.................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TCCATCTCCAAATCACGGCGTTTCTACA.............................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................CTACTCTAATGCGCTGTTGTTATA...................................................................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................CAGGTCCATCTCCAAATCACGGCGTTTC.................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
........................................................................................................................................TCAGCGCGCTACGAGGCT................................................................................................ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
......................................................GCGCTGTTGTTATAAGCACATAAGGT.......................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................................................TCCAAATCACGGCGTTTC.................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................TGACTTATTGGGCTAATTTGACATT............................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
......................................................................................ACTTATTGGGCTAATTTGACA............................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
....................................TCGTGTGGCTACTCTAATGCGCTGT............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................................TCCATCTCCAAATCACGGCGTTTC.................................. 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................................TCCATCTCCAAATCACGGC....................................... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
....TAAGCAATCAACTTCTAA.................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.........................................................CTGTTGTTATAAGCACATAAGGTCCG....................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
............................................................................................................................................................................................CGGGTCCATCTCCAAATCA........................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................CTAACGGAGGTGACCCCCTCGTGTGGC............................................................................................................................................................................................................. 27 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
.........................................TGGCTACTCTAATGCGCTGTTG........................................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................CAGCGCGCTACGAGGCTAATATCAGTC...................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................TCAGTCTTACATGTACTTC......................................................................... 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................CAGGTCCATCTCCAAATC............................................ 18 0 2 1.00 2 2 0 0 0 0 0 0 0 0 0 0
...........................................................................................TTGGGCTAATTTGACATTTGTTA........................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................AGGTCCATCTCCAAATCACGGCGTT.................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................TAACTATTACAGGTCCAT..................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
................................................TCTAATGCGCTGTTGTTATA...................................................................................................................................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
......................CGGAGGTGACCCCCTCGTGTGGCTACT......................................................................................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
...............................CCCCCTCGTGTGGCTACTCTA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
TCATTAAGCAATCAACTTCTAA.................................................................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
..................................................................................GTTTACTTATTGGGCTAATTTGACATT............................................................................................................................................. 27 2 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.......................................................................................................................................ATCAGCGCGCTACGAGGCTAATATCAGT....................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................GTGTGGCTACTCTAATGCGCT............................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................TGGGCTAATTTGACATTTGTTATAAAC................................................................................................................................... 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
.....................................CGTGTGGCTACTCTAATGCGCTGTTGTT......................................................................................................................................................................................... 28 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................GGCTACTCTAATGCGCTGTCA........................................................................................................................................................................................... 21 2 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.........................AGGTGACCCCCTCGTGTGGCT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................ATTGGGCTAATTTGACATTTGTT......................................................................................................................................... 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................AATGGGCTATTTTGACA............................................................................................................................................... 17 2 11 0.09 1 0 0 0 0 0 0 0 1 0 0 0
................................................................TATAAGCACATTAGGCC......................................................................................................................................................................... 17 2 13 0.08 1 0 0 0 0 0 0 0 1 0 0 0
..................................................................................................................................................ACGAGGCTAATCGCAG........................................................................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
..................................................................................................................................................TCGGGGCTAATGTCAGTC...................................................................................... 18 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
...............................................................................................GCTAATTGGATATTCGTTA........................................................................................................................................ 19 3 20 0.05 1 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................CTAGGAGGCTAATCTCAA........................................................................................ 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0
......................................................................................................................................................................................................................GCTAAATGAGGAGCCCCG.................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:9443702-9443951 + dsi_25441 AGTAATTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGGCTACTGAATAACCCGA-T--TAAACT-GTAAACAATAT-TTGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCTCCGATTATAGTCAGAATGTACATGAAGATATTGATAATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATGTACTCCTCGGGACTGATAGAGTACTTGTGCT
droSec2 scaffold_1:6280772-6281021 + AGTAATTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGGCTACTGAATAACCCGA-T--TAAACT-GTAAACAATAT-TTGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGATTTAGTGCCGCAAAGATGTACTCCTCGGGACTGATGGAGTATTTGTGCT
dm3 chr2R:8765026-8765275 + AGTAATTCGTTAGTT-GAAG-------------ATTACC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGGTTACTGAATAACCCGA-T--TAAGCT-GCAAACAATAT-TTGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATGTACTCCTCGGGACTGATAGAGTATTTGTGCT
droEre2 scaffold_4845:17060243-17060489 - AGCAATTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCG-GATTACAGAATAACCCGG-C--TAAACA-GTAAACAATAT-TTGGAAATAGAGC------------G----GAGCTTAGTCGCGTGACGCTCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATATATTCCTCGGGACTGATAGAGTATTTGTGCT
droYak3 2R:8206695-8206941 - AGCCATTCTTTAGTT-GAAG-------------TTTTCCTTTT------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACGATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------TT-TA-GGTTACAAAATAACCCGG-C--TAAACA-GTAAACAATAT-TTGGAAATAGAGC------------G----GAGCTTAGTCGCGCGACGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATATACTCCTCGGGGCTGATGGAGTATTTGTGCT
droEug1 scf7180000409672:3875519-3875765 - AATAATTCATAACTTTAAAG-------------ATTGCC-CCC------ACTGGA--AA-----GG---------TAGTA---T------------------------------TGAGATTACGC--CACAAATATGT--------------------------------TGTT-A------C--------------------------------------------------------------------------------------------------------------TTTC-GGTTAATGACTACACCGT-T--TAAAGC-GAAAACACTTT-TAAGAGTTAGAAC------------G----GAACTTAGTCGCGCGATGCGCCAATAATAGTCAGAATGTACATAAAGATATTGATGATATCCAAGTAAAGGTTCAGTGCGGCGAAGATGTATTCTTCCGGACTGATGGAGTACTTGTGCT
droBia1 scf7180000302291:1264165-1264417 - AGTAATTCGTTAGTT-AAAG-------------ATTTCC-TGC------ACTGGG--TG-----AG-GTTGTAAATACCA---A------------------------------TGAGATTACGC--GGGAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------TTTCA-GGTTTAATCCTAACGTGG-T--TAAACT-GTACATAATAT-TTGGAAATAGAGC------------A----AAACTTAGTCGCGCGATGCGCCAATTATAGTCAGAATGTACATGAAGATATTGATAATGTCCAGGTAGAGGTTCAGCGCCGCAAATATGTACTCCTCAGGGCTGATAGAGTACTTGTGCT
droTak1 scf7180000415762:385515-385767 - AGTAATTCGTTAGTT-GTAG-------------ATTGCC-TCC------ACCCGG--TG-----AG-GCTGTAAATACCA---A------------------------------TGAGATTACGC--GCGAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCA-GGAATAGTCCTAACCTGG-T--TAAACT-GTACATAATAT-TGGGAAAAAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATATCCAGGTAGAGGTTCAGCGCCGCAAAGATGTACTCCTCGGGACTGATGGAGTACTTGTGCT
droEle1 scf7180000491215:288775-289027 - AGTAGATCGTTAGTT-GAAA-------------ATTGCC-TCC------ACTGGG--AG-----AG-GGTGTAAATACCG---A------------------------------TGAGATTACGC--GACAACAACAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCC-GGTTAAAGCTAAACCCGG-C--TAAACT-GTAAACAATAT-ATGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATAAAGATGTTGATGATGTCCAGGTAGAGGTTCAGCGCCGCAAAGATATACTCCTCGGGGCTGATCGAGTACTTGTGCT
droRho1 scf7180000779957:138980-139226 - AGTAGTTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--G------AG-GGTGTAAATACCG---A------------------------------TGAGATTACGC--GACAAC---AT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCC-GGTTAAAGCTAAACCCGG-T--TAAACT-GTAAACAATTT-ATGGAAATCGAA------------------GAGTTTAGTCGCGCGATGCGCCGATTATAGTTAGAATGTACATAAATATGTTGATGATATCCAGGTAGAGGTTCAGCGCCGCAAAGATGTACTCTTCGGGGCTGATCGAGTACTTGTGCT
droFic1 scf7180000454066:520138-520389 - -GTAGTTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GA-----AG-GATGTAAATACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------TTTCC-GGTTAAAGCTAAATCCGG-T--TAAATT-GTAAACAATAC-ATGGAAATAGAGC------------G----GCACTTAGTCGCGCGATGCACCGATGATAGTCAGAATGTACATGAAGATGTTGATGATGTCCAGGTAGAGATTCAGCGCCGCAAAGATGTACTCCTCGGGGCTGATTGAGTACTTGTGCT
droKik1 scf7180000302670:177912-178178 + AGTAATTCGTTAGTTTGAAG-AG----------ATTGCC-TTC------ACTTCG-GGGGGCAAAA-GGTGTAAATACCG---A------------------------------TGAGATTACGCGCGACAACAATAT--------------------------------TCA---------T-------------------------------------------------------------------------------------------------------------ATTCC-GGCTAAAGCTTGACCCGGCC--TAAACTGGTAAACAACATAACGGAAATCGTGC------------G----AGCCTTAGTCGCGCGAGGCTCCGATTATAGTAAGAATGTACATGAAGATGTTGATGATGTCCAGGTAGAGGTTCAGCGCCGCAAAGATGTACTCCTCGGGGCTGATCGAGTACTTGTGCT
droAna3 scaffold_13266:6232479-6232744 + AGTAATGCGTAAGTT-GAAG-------------AGCGCC-TTC------ACTGGG--GG-----AA-GGTTTAAATACCG---A------------------------------TGAGATTACGC---ATAACAATAT--------------------------------TCGTCGTATTCAT-------------------------------------------------------------------------------------------------------------ATTCC-GGCTAAAGCTAAACCCGG-TTGTAAACT-GTAAACAATAT-TTGGAAATAGAGC------------GGCT-GTACTTAGTCGCGTGACGCGCCAATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTATAGGTTGAGGGCCGCGAAGATGTACTCCTCGGGACTGATCGAATACTTGTGCT
droBip1 scf7180000395839:387473-387742 + AGTGACTCGTTAGTTTGGAG-------------AGTACCCTTC------ACTGGG--AA-G--GAA-GGTGTATATACCGATGA------------------------------TGAGATTACGC---ATAACAACAT--------------------------------TCGT-A--TTCAT-------------------------------------------------------------------------------------------------------------ATTCC-GGCTAAAGCTAATCCCGG-TTGTAAACT-GTAAACAATAT-TTGGAAATAGAGC------------TGCG-GTGCTTAGTCGCGCGACGCCCCAATTATAGTCAGAATGTACATGAAGATATTGATAATGTCCAGGTAGAGGTTGAGGGCCGCGAAGATGTACTCCTCGGGGCTGATCGAATACTTGTGCT
dp5 3:14787856-14788135 + AGTAATCTTTAAGTT-GAAT-------------ATAGCC-GCC-GTTTCGTTTCTCAGTGTCAGAACAGGTTAGAGGCGA---A------------------------------TGAGATTAGAC--GACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GGTTAAAGCTGGAGCCGG-T--TAAAAT-GTAAAGAATAT-TTGGATATAAATCGATTGTCTACGCGCGGGATCCTTAGTCGCGCGATGCTCCAATTATAGTGAGAATGTACATGAAGATGTTGATGATGTCCAAATAGAGATTCAGGGCCGCGAAGATGTACTCCTCGGGACTGATGGAGTACTTGTGAT
droPer2 scaffold_4:2826491-2826770 - AGTAATCTTTAAGTT-GAAT-------------ATAGCC-GCC-GTTTCGTTTCTCAGTGTCAGAACTGGTTAGAGGCGA---A------------------------------TGAGATTAGAC--GACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GGTTAAAGCTGGAGCCGG-T--TAAAAT-GTAAAGAATAT-TTGGAAATAAATCGATTGTCTACGCGCGGGATCCTTAGTCGCGCGATGCTCCAATTATAGTGAGAATGTACATGAAGATGTTGATGATGTCCAAATAGAGATTCAGGGCCGCGAAGATGTACTCCTCGGGACTGATGGAGTACTTGTGAT
droWil2 scf2_1100000004510:1156570-1156849 - GATAATACTTTAGAT-A----------------------------------TAAG--GA-----AA-------CAAACGG---ATAGGATAAACATTAGAAATTTCAGAGTGTGTGAGGCTATGC--GACAACAACAAAAAGAAAGTTTCGATCCAATTTCGATCGT-------------------------------------G---------------------------------------------------------------------------------CAACATT---T-TG---------------------------TTAAGGAAAGT-GTTATTATGGGCCTATTACCGAC----AA-AATTTTAATCCCGCGAAGCTCCTATTATAGTGAGAATGTAAAGGAATATATTGATAATATCCAAATAGAGATTCAAAGCAGCGAAAATGTATTCCTCGGGACTAATCGAGTACTTATGAT
droVir3 scaffold_12875:13322774-13323067 - CGCAACCAAACAGCT-CAAAATAATAATATTCGAACGCT-TTC------GTTTCT--GT-----GA-------CTGGTAA---A------------------------------TGAGATTATGC--GGTTAT-------------------------------TA-----------------GAAATATAACA-TTAGTAAGGGCAATACAATTAAGTTTTTC----ACATTGCCTGTTAACATTAAATCAAAGTTTGCCGAATAC------------------------------------------------------------------------AAGTTAATTGGGC------------GCAT-GGTTTTAGTCCCGCGAGGCGCCAATTATGGTTAGAATATATATGAAAATGTTGACAATGTCCAAGTACAGATTCAGAGCAGCAAAGATATACTCCTCGGGACTTATAGAGTACTTATGAT
droMoj3 scaffold_6496:20617454-20617742 - AAATATTCATT--TT-GAAA---------------CGCT-TTCGCTTTCGTTTCT--GT-----GA-------CTTGATT---A------------------------------TGAGATTACGC--GGTTAT-------------------------------TG-----------------AAAATATATCTGATTGTTAGGGCAACATTAATAAGCTAATTGCCTATATTGCCTGTTAACATAAAATTCAAGTATGCCAAATAG------------------------------------AAGTTT-----------------------------------AATTCCGT------------AACG-CCTTCTAGTCCCGCGATGCTCCAATAATGGTTAGAATGTATATGAAAATGTTGACCACATCCAAGTAGAGATTCAGCGCGGCAAATATGTATTCCTCGGGGCTAATCGAGTACTTATGAT
droGri2 scaffold_15245:7030505-7030741 + AACG---------------------------------CT------------------------------------TTCAA---A------------------------------TGAGATTACGC--GATTAT-------------------------------CGTAACTAG--------------------TAATAGGAAGCAAAACATTAATAAGC--------------------------------------TGCCGATTAAAATCAAAATAAGTTCTAACCAAAAT-----------G-----------------------------------TTGTTAATTGTGC------------GCCT-GATTCTAATCGCGCGAGGCGCCAATTATGGTTAGAATGTAGATGAAGATGTTGATTATATCCAAGTAAAGATTCAGTGCAGCAAATATATACTCCTCGGGACTAATCGAGTACTTGTGAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGTAATTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGGCTACTGAATAACCCGA-T--TAAACT-GTAAACAATAT-TTGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCTCCGATTATAGTCAGAATGTACATGAAGATATTGATAATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATGTACTCCTCGGGACTGATAGAGTACTTGTGCTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................ACACCG---A------------------------------TGAGATTACGC--GAC.......................................................................................................................................................................................................................................................................................................................................................................2112.00220000000000000000
.................................................................................................................................................................................................................................................................................................................................................T-TTGGAAATAGAGC------------G----GATT....................................................................................................................1930.33100000000000001000
droSec2
AGTAATTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGGCTACTGAATAACCCGA-T--TAAACT-GTAAACAATAT-TTGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGATTTAGTGCCGCAAAGATGTACTCCTCGGGACTGATGGAGTATTTGTGCTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGATGGAGTATTTGTGCT2011.0010001
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGATGTCCAGGTAGAG..................................................2111.0010100
.............TT-GAAG-------------ATTGCC-TCC------ACTGGG--................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
dm3
AGTAATTCGTTAGTT-GAAG-------------ATTACC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGGTTACTGAATAACCCGA-T--TAAGCT-GCAAACAATAT-TTGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATGTACTCCTCGGGACTGATAGAGTATTTGTGCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGATGTCCAGGTAGAGG.................................................2117.0070000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000102000000000000000000000000000000000000000000000000100000000000000000000000000001000000000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGATGTCCAGGTAGAG..................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000001000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATTGATGATGTCCAG........................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................CAATAT-TTGGAAATAGAGC------------G----G.......................................................................................................................2114.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200010000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGTCCAGGTAGAGGT................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGTACTCCTCGGGACTG................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000110
..........................................................................................................................................................................................................................................................................................................................................AACAATAT-TTGGAAATAGAGC------------.............................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000010000000000010000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................AATAGAGC------------G----GAACTTAGTCGC............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................AAATAGAGC------------G----GAACTTAGTCG.............................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACATGAAGATATTGATG................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................CTGAATAACCCGA-T--TAAGCT-G.................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.GTAATTCGTTAGTT-GAAG-------------ATT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTGATGATGTCCAGGTAGAGGT................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................G----GAACTTAGTCGCGCGATGCGT...................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACTCCTCGGGACTGAT..............2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................CTTAGTCGCGCGATGCGCCGATT..............................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000100000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATGTCCAGGTAGAGGT................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGATATTGATGATGTC...........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCAGGTAGAGGTTTAGTGCC........................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGATTATAGTCAGAA....................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTACTCCTCGGGACTGA...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGATAGAGTATTTGTG..1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................ATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGGTT...........................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................GAACTTAGTCGCGCGATGCGCC..................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................G-----AG-------CACACCG---A------------------------------TGAGATTA...............................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................AT-TTGGAAATAGAGC------------G----GAA.....................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCAGGTAGAGGTTTAGTGCCG.......................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................T-TTGGAAATAGAGC------------G----GAACTT..................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTAGTGCCGCAAAGATGTA.............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................................................................................................................................................................................................................................................................................................AGAATGTACATGAAGATATTG...................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGATTATAGTCAGAATGTACAT.............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCAGGTAGAGGTTTAGTGCCGC......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...................................................................................A------------------------------TGAGATTACGC--GACAACA...................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................TAT-TTGGAAATAGAGC------------G----GAACTT..................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGTCCAGGTAGAGGTTTA.............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCCAGGTAGAGGTTTAGTG..........................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGTACTCCTCGGGACTGA...............2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................TAGAGC------------G----GAACTTAGTCGCGC..........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................GATGCGCCGATTATAGTCAGA.....................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000
.....TTCGTTAGTT-GAAG-------------ATTACC-TCC------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCTCGGGACTGATAG............1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGATGTCCAGGTAGA...................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACTGATAGAGTATTTGTGG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................ATAACCCGA-T--TAAGCT-GCAAA.............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGTCCAGGTAGAGGTTTAGT...........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................................ATAGAGC------------G----GAACTTAGTCGCG...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................................................................................................................................................................................................................................................................................................AAATAGAGC------------G----GAACTTAGTCGC............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATGTACTCCTCGGGC...................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................GTACATGAAGATATTGATGAT..............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAAAGATGTACTCCTCGGG....................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATGTACTCCTCGGGAC..................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGGACTGATAGAGTATTTGT...2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGATGTACTCCTCGGGACT.................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................GAACTTAGTCGCGCGATGCG....................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGGACTGATAGAG..........1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTCCAGGTAGAGGTTTAGTGCCG.......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCGATGCGCCGATTATAGTCA.......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
...................................................TGGG--GG-----AG-------CACACCG---A------------------------------TGAGA..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................C--GACAACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------AT...................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................G-------------ATTACC-TCC------ACTGGG--GG-----AG-------C...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................ACAATAT--------------------------------TCGT-G------T-------------------------------------------------------------------------------------------------------------ATTCCAGG.............................................................................................................................................................................................2111.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................CTGGG--GG-----AG-------CACACCG---A------------------------------TGAG...................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................T-GCAAACAATAT-TTGGAAATAGAGC------------.............................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
droEre2
AGCAATTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCG-GATTACAGAATAACCCGG-C--TAAACA-GTAAACAATAT-TTGGAAATAGAGC------------G----GAGCTTAGTCGCGTGACGCTCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATATATTCCTCGGGACTGATAGAGTATTTGTGCTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
AGCCATTCTTTAGTT-GAAG-------------TTTTCCTTTT------ACTGGG--GG-----AG-------CACACCG---A------------------------------TGAGATTACGC--GACAACGATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------TT-TA-GGTTACAAAATAACCCGG-C--TAAACA-GTAAACAATAT-TTGGAAATAGAGC------------G----GAGCTTAGTCGCGCGACGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTAGAGGTTTAGTGCCGCAAAGATATACTCCTCGGGGCTGATGGAGTATTTGTGCTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.........................................................................CACACCG---A------------------------------TGAGATTACGC--GAC.......................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGATGATGTCCAGGTAGAGGT................................................2311.00100000010000
droEug1
AATAATTCATAACTTTAAAG-------------ATTGCC-CCC------ACTGGA--AA-----GG---------TAGTA---T------------------------------TGAGATTACGC--CACAAATATGT--------------------------------TGTT-A------C--------------------------------------------------------------------------------------------------------------TTTC-GGTTAATGACTACACCGT-T--TAAAGC-GAAAACACTTT-TAAGAGTTAGAAC------------G----GAACTTAGTCGCGCGATGCGCCAATAATAGTCAGAATGTACATAAAGATATTGATGATATCCAAGTAAAGGTTCAGTGCGGCGAAGATGTATTCTTCCGGACTGATGGAGTACTTGTGCTSizeHit CountTotal NormTotal
No Reads
droBia1
AGTAATTCGTTAGTT-AAAG-------------ATTTCC-TGC------ACTGGG--TG-----AG-GTTGTAAATACCA---A------------------------------TGAGATTACGC--GGGAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------TTTCA-GGTTTAATCCTAACGTGG-T--TAAACT-GTACATAATAT-TTGGAAATAGAGC------------A----AAACTTAGTCGCGCGATGCGCCAATTATAGTCAGAATGTACATGAAGATATTGATAATGTCCAGGTAGAGGTTCAGCGCCGCAAATATGTACTCCTCAGGGCTGATAGAGTACTTGTGCTSizeHit CountTotal NormTotal
No Reads
droTak1
AGTAATTCGTTAGTT-GTAG-------------ATTGCC-TCC------ACCCGG--TG-----AG-GCTGTAAATACCA---A------------------------------TGAGATTACGC--GCGAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCA-GGAATAGTCCTAACCTGG-T--TAAACT-GTACATAATAT-TGGGAAAAAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATGAAGATATTGATGATATCCAGGTAGAGGTTCAGCGCCGCAAAGATGTACTCCTCGGGACTGATGGAGTACTTGTGCTSizeHit CountTotal NormTotal
No Reads
droEle1
AGTAGATCGTTAGTT-GAAA-------------ATTGCC-TCC------ACTGGG--AG-----AG-GGTGTAAATACCG---A------------------------------TGAGATTACGC--GACAACAACAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCC-GGTTAAAGCTAAACCCGG-C--TAAACT-GTAAACAATAT-ATGGAAATAGAGC------------G----GAACTTAGTCGCGCGATGCGCCGATTATAGTCAGAATGTACATAAAGATGTTGATGATGTCCAGGTAGAGGTTCAGCGCCGCAAAGATATACTCCTCGGGGCTGATCGAGTACTTGTGCTSizeHit CountTotal NormTotal
No Reads
droRho1
AGTAGTTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--G------AG-GGTGTAAATACCG---A------------------------------TGAGATTACGC--GACAAC---AT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------ATTCC-GGTTAAAGCTAAACCCGG-T--TAAACT-GTAAACAATTT-ATGGAAATCGAA------------------GAGTTTAGTCGCGCGATGCGCCGATTATAGTTAGAATGTACATAAATATGTTGATGATATCCAGGTAGAGGTTCAGCGCCGCAAAGATGTACTCTTCGGGGCTGATCGAGTACTTGTGCTSizeHit CountTotal NormTotal
No Reads
droFic1
-GTAGTTCGTTAGTT-GAAG-------------ATTGCC-TCC------ACTGGG--GA-----AG-GATGTAAATACCG---A------------------------------TGAGATTACGC--GACAACAATAT--------------------------------TCG---------T-------------------------------------------------------------------------------------------------------------TTTCC-GGTTAAAGCTAAATCCGG-T--TAAATT-GTAAACAATAC-ATGGAAATAGAGC------------G----GCACTTAGTCGCGCGATGCACCGATGATAGTCAGAATGTACATGAAGATGTTGATGATGTCCAGGTAGAGATTCAGCGCCGCAAAGATGTACTCCTCGGGGCTGATTGAGTACTTGTGCTSizeHit CountTotal NormTotal
No Reads
droKik1
AGTAATTCGTTAGTTTGAAG-AG----------ATTGCC-TTC------ACTTCG-GGGGGCAAAA-GGTGTAAATACCG---A------------------------------TGAGATTACGCGCGACAACAATAT--------------------------------TCA---------T-------------------------------------------------------------------------------------------------------------ATTCC-GGCTAAAGCTTGACCCGGCC--TAAACTGGTAAACAACATAACGGAAATCGTGC------------G----AGCCTTAGTCGCGCGAGGCTCCGATTATAGTAAGAATGTACATGAAGATGTTGATGATGTCCAGGTAGAGGTTCAGCGCCGCAAAGATGTACTCCTCGGGGCTGATCGAGTACTTGTGCTSizeHit CountTotal NormTotal
No Reads
droAna3
AGTAATGCGTAAGTT-GAAG-------------AGCGCC-TTC------ACTGGG--GG-----AA-GGTTTAAATACCG---A------------------------------TGAGATTACGC---ATAACAATAT--------------------------------TCGTCGTATTCAT-------------------------------------------------------------------------------------------------------------ATTCC-GGCTAAAGCTAAACCCGG-TTGTAAACT-GTAAACAATAT-TTGGAAATAGAGC------------GGCT-GTACTTAGTCGCGTGACGCGCCAATTATAGTCAGAATGTACATGAAGATATTGATGATGTCCAGGTATAGGTTGAGGGCCGCGAAGATGTACTCCTCGGGACTGATCGAATACTTGTGCTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGGCCGCGAAGATGTACTC..........................2111.001000001
...........................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGATATTGATGATGTC...........................................................1911.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................................................TACATGAAGATATTGATGATG.............................................................2111.001000001
..................AG-------------AGCGCC-TTC------ACTGGG--GG-----A........................................................................................................................................................................................................................................................................................................................................................................................................................................2020.501100000
...................................................................................................................GAGATTACGC---ATAACAATAT--------------------------------TCGTCGTA.......................................................................................................................................................................................................................................................................................................................2820.501010000
droBip1
AGTGACTCGTTAGTTTGGAG-------------AGTACCCTTC------ACTGGG--AA-G--GAA-GGTGTATATACCGATGA------------------------------TGAGATTACGC---ATAACAACAT--------------------------------TCGT-A--TTCAT-------------------------------------------------------------------------------------------------------------ATTCC-GGCTAAAGCTAATCCCGG-TTGTAAACT-GTAAACAATAT-TTGGAAATAGAGC------------TGCG-GTGCTTAGTCGCGCGACGCCCCAATTATAGTCAGAATGTACATGAAGATATTGATAATGTCCAGGTAGAGGTTGAGGGCCGCGAAGATGTACTCCTCGGGGCTGATCGAATACTTGTGCTSizeHit CountTotal NormTotal
No Reads
dp5
AGTAATCTTTAAGTT-GAAT-------------ATAGCC-GCC-GTTTCGTTTCTCAGTGTCAGAACAGGTTAGAGGCGA---A------------------------------TGAGATTAGAC--GACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GGTTAAAGCTGGAGCCGG-T--TAAAAT-GTAAAGAATAT-TTGGATATAAATCGATTGTCTACGCGCGGGATCCTTAGTCGCGCGATGCTCCAATTATAGTGAGAATGTACATGAAGATGTTGATGATGTCCAAATAGAGATTCAGGGCCGCGAAGATGTACTCCTCGGGACTGATGGAGTACTTGTGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................CGA---A------------------------------TGAGATTAGAC--GACAAC....................................................................................................................................................................................................................................................................................................................................................................2113.0030300000000
.............................................................................................................................................................................................................................................................................................................................................................ATCGATTGTCTACGCGCGGGA.......................................................................................................................2113.0030300000000
................................................................................................................................................................................................................................................................................................................................................................................GATCCTTAGTCGCGCGATGCT....................................................................................................2113.0030300000000
............................................................................................................................................................................................................................................................................................................................................................AATCGATTGTCTACGCGCGGG........................................................................................................................2113.0030300000000
.......................................................................TAGAGGCGA---A------------------------------TGAGATTAGAC--..........................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
................................................................................................................................ACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GGTT...........................................................................................................................................................................................2112.0020200000000
........................................................................................................................................................................................................................................................................................................................................................TATAAATCGATTGTCTACGCG............................................................................................................................2112.0020000000020
........TTAAGTT-GAAT-------------ATAGCC-GCC-G............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020200000000
......CTTTAAGTT-GAAT-------------ATAGCC-GC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020100001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGATTCAGGGCCGCGAA...................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................AGCC-GGTTAAAGCTGGAGCCG..............................................................................................................................................................................2111.0010100000000
.............TT-GAAT-------------ATAGCC-GCC-GTTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................CGGGATCCTTAGTCGCGCGA........................................................................................................2011.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGATTCAGGGCCGC......................................1911.0010100000000
.................................................GTTTCTCAGTGTCAGAACAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................CGATTGTCTACGCGCGGGATA.....................................................................................................................2111.0010100000000
..........................................................TGTCAGAACAGGTTAGAGGC...........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................AGCC-GCC-GTTTCGTTTCTCCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................GCGGGATCCTTAGTCGCGCG.........................................................................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................CGATTGTCTACGCGCGGGATC.....................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCGCGAAGATGTACTCC.........................2211.0010000001000
...........AGTT-GAAT-------------ATAGCC-GCC-GTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCAAATAGAGATTCAGGGC.........................................2111.0010100000000
........TTAAGTT-GAAT-------------ATAGCC-GCC-.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000010
.....................................................................................................................................................................................................................................................................................................AGCC-GGTTAAAGCTGGAGCC...............................................................................................................................................................................2011.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................AAATCGATTGTCTACGCGCGG.........................................................................................................................2111.0010000000010
.......................................................CAGTGTCAGAACAGGTTAGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2011.0011000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTACTCCTCGGGACTGATG.............2121.0020200000000
..............T-GAAT-------------ATAGCC-GCC-GTTTCG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
............................................................................................................................C--GACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-T..............................................................................................................................................................................................2011.0010100000000
.....................................................................................................................................................................................................................................................................................................AGCC-GGTTAAAGCTGGAGC................................................................................................................................................................................1911.0010100000000
............................................................................................................................C--GACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GG.............................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TATAGTGAGAATGTACATGA...........................................................................2011.0010100000000
............................................................TCAGAACAGGTTAGAGGCGA---......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGTACTCCTCGGGAC..................1921.0020200000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................TACATGAAGATGTTGATGATG.............................................................2111.0010100000000
............GTT-GAAT-------------ATAGCC-GCC-GTTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
AGTAATCTTTAAGTT-GAAT-------------ATAGCC-.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
......................................................................................................................................................................................................................................................................................................GCC-GGTTAAAGCTGGAGCCG..............................................................................................................................................................................2011.0010100000000
.............................................................CAGAACAGGTTAGAGGCGA---A------------------------------T......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................TATAAATCGATTGTCTACGCGCGGGA.......................................................................................................................2611.0010000001000
..........AAGTT-GAAT-------------ATAGCC-GCC-GTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................GACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GG.............................................................................................................................................................................................2011.0010100000000
.................................................................ACAGGTTAGAGGCGA---A------------------------------TGAGA..................................................................................................................................................................................................................................................................................................................................................................................2111.0010000001000
..............................................................................................................................................................................................................................................................................................................................................................TCGATTGTCTACGCGCGGGA.......................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................ATAAATCGATTGTCTACGCGC...........................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................ACGCGCGGGATCCTTAGTCGC............................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................TAAAGCTGGAGCCGG-T--TAA......................................................................................................................................................................1911.0010100000000
........................................................AGTGTCAGAACAGGTTAGAGGT...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGATGTCCAAATAGAGA.................................................2011.0010100000000
...............................................................................................................................................................................................................................................................................................................................................................................................GATGCTCCAATTATAGTGAG......................................................................................2011.0010100000000
......................................................................................................................................ATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GGTTAAAGCT.....................................................................................................................................................................................2111.0010100000000
....................................................TCTCAGTGTCAGAACAGGTT.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................AATGTACATGAAGATGTTGAT.................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATAGAGATTCAGGGCCGT......................................2211.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGATGTCCAAATAGA...................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................ATATAAATCGATTGTCTACGC.............................................................................................................................2111.0010000001000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGATGATGTCCAAATAG....................................................2011.0010100000000
.............................................TTTCGTTTCTCAGTGTCAGAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCGCGAAGATGTACTC..........................2111.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGATGTACTCCTCGGGAC..................2121.0020100001000
........TTAAGTT-GAAT-------------ATAGCC-GCC-GT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
.................................................................................................................................................................................................................................................................................................................................................................................ATCCTTAGTCGCGCGATGCT....................................................................................................2011.0010100000000
..................................................................................................................................................................................................................................................................................................................................................................................TCCTTAGTCGCGCGATGCTCCAATTA.............................................................................................2611.0010100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGCCGCGAAGATGTACT...........................2011.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCGGGACTGATGGAGTAC.......2020.5010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTCCTCGGGACTGATGGAGT.........2120.5010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGTACTCCTCGGGACT.................2120.5010000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGTACTCCTCGGGACTGATGGA...........2720.5010000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTACTCCTCGGGACTGT...............2120.5010100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGTACTCCTCGGGACTGATG.............2220.5010100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGTTGATGATGTCC..........................................................1920.5010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGTACTCCTCGGGACT.................2020.5010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAAGATGTACTCCTCGG.....................2020.5010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGAAGATGTACTCCTCGGG....................2120.5010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGTACTCCTCGGGACTGA...............2120.5010100000000
droPer2
AGTAATCTTTAAGTT-GAAT-------------ATAGCC-GCC-GTTTCGTTTCTCAGTGTCAGAACTGGTTAGAGGCGA---A------------------------------TGAGATTAGAC--GACAACAATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GGTTAAAGCTGGAGCCGG-T--TAAAAT-GTAAAGAATAT-TTGGAAATAAATCGATTGTCTACGCGCGGGATCCTTAGTCGCGCGATGCTCCAATTATAGTGAGAATGTACATGAAGATGTTGATGATGTCCAAATAGAGATTCAGGGCCGCGAAGATGTACTCCTCGGGACTGATGGAGTACTTGTGATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................................................................ATAG----------------------------------G---------T-------------------------------------------------------------------------------------------------------------AAGCC-GGTTAAAGC......................................................................................................................................................................................2012.002000002
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAATAGAGATTCAGGGCCG.......................................2111.001010000
.........................................................................................................................................................................................................................................................................................................................................................ATAAATCGATTGTCTACGCGC...........................................................................................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................ATTGTCTACGCGCGGGATC.....................................................................................................................1911.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATAGAGATTCAGGGCCGC......................................2111.001010000
........................................GCC-GTTTCGTTTCTCAGTGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001010000
.............................................................................................................................................................................................................................................................................................................................................................................................................AGTGAGAATGTACATGAAGAT.......................................................................2111.001000001
.................................................................................................................................................................................................................................................................................................................................................................ATTGTCTACGCGCGGGATCCT...................................................................................................................2111.001000100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGATGTACTCCTCGGGACTG................2120.501000001
droWil2
GATAATACTTTAGAT-A----------------------------------TAAG--GA-----AA-------CAAACGG---ATAGGATAAACATTAGAAATTTCAGAGTGTGTGAGGCTATGC--GACAACAACAAAAAGAAAGTTTCGATCCAATTTCGATCGT-------------------------------------G---------------------------------------------------------------------------------CAACATT---T-TG---------------------------TTAAGGAAAGT-GTTATTATGGGCCTATTACCGAC----AA-AATTTTAATCCCGCGAAGCTCCTATTATAGTGAGAATGTAAAGGAATATATTGATAATATCCAAATAGAGATTCAAAGCAGCGAAAATGTATTCCTCGGGACTAATCGAGTACTTATGATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..........................................................................................................................................................................................................................................................................................................................................AGGAAAGT-GTTATTATGGGCC.........................................................................................................................................2112.00211000
.......................................................................................................................................................ATCCAATTTCGATCGT-------------------------------------G---------------------------------------------------------------------------------CAAC.......................................................................................................................................................................................................2112.00220000
........................................................................................................................................................TCCAATTTCGATCGT-------------------------------------G---------------------------------------------------------------------------------CAACA......................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................................................................................................................................................................AGGAAAGT-GTTATTATGGG...........................................................................................................................................1911.00100100
.....................................................AG--GA-----AA-------CAAACGG---ATAGGATA..............................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
.........................................................................................................................................................................................................................................................................................................................................AAGGAAAGT-GTTATTATGGGC..........................................................................................................................................2111.00101000
..................................................................................................................................................................................................................................................................................................................................................................TTACCGAC----AA-AATTTTAATC..............................................................................................................2011.00101000
.........................................................................................................................................................................................................................................................................................................................................................................C----AA-AATTTTAATCCCGCGAAG......................................................................................................2111.00101000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAAATGTATTCCTCGGGACT.................2111.00101000
.................................................................A-------CAAACGG---ATAGGATAAACAT.........................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
..........................................................A-----AA-------CAAACGG---ATAGGATAAACAT.........................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCGAAAATGTATTCCT........................2011.00101000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAATGTATTCCTCGGGACT.................2011.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTGAGAATGTAAAGGA...........................................................................2111.00100100
.................................................................................................................................................................GATCGT-------------------------------------G---------------------------------------------------------------------------------CAACATT---T-TG---------------------------TTAAGG............................................................................................................................................................2311.00100100
.....................................................................................................................................................................................................................................................................................................................................................TATTATGGGCCTATTACCGAC----...........................................................................................................................2111.00101000
............................................................................................................................................................................................................................................................................................................................................................................................................TAGTGAGAATGTAAAGGAATA........................................................................2111.00100100
...................................................................................................................GAGGCTATGC--GACAACAA..................................................................................................................................................................................................................................................................................................................................................................1811.00101000
droVir3
CGCAACCAAACAGCT-CAAAATAATAATATTCGAACGCT-TTC------GTTTCT--GT-----GA-------CTGGTAA---A------------------------------TGAGATTATGC--GGTTAT-------------------------------TA-----------------GAAATATAACA-TTAGTAAGGGCAATACAATTAAGTTTTTC----ACATTGCCTGTTAACATTAAATCAAAGTTTGCCGAATAC------------------------------------------------------------------------AAGTTAATTGGGC------------GCAT-GGTTTTAGTCCCGCGAGGCGCCAATTATGGTTAGAATATATATGAAAATGTTGACAATGTCCAAGTACAGATTCAGAGCAGCAAAGATATACTCCTCGGGACTTATAGAGTACTTATGATSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
........................TAATATTCGAACGCT-TTC------GTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000100000000000000000000000000000000000000000000000000000
.........................................................................CTGGTAA---A------------------------------TGAGATTATGC--GG........................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GACAATGTCCAAGTACAGATT...............................................2111.001000000000000000000000000000010000000000000000000000000000000000
..................................................TTTCT--GT-----GA-------CTGGTAA---A------------------------------TG.....................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................................................CGAATAC------------------------------------------------------------------------AAGTTAATTGGGC------------G............................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
................................................................GA-------CTGGTAA---A------------------------------TGAGATTAT..............................................................................................................................................................................................................................................................................................................................................................................1911.001000000100000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................AAGTTAATTGGGC------------GCAT-GG......................................................................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
AAATATTCATT--TT-GAAA---------------CGCT-TTCGCTTTCGTTTCT--GT-----GA-------CTTGATT---A------------------------------TGAGATTACGC--GGTTAT-------------------------------TG-----------------AAAATATATCTGATTGTTAGGGCAACATTAATAAGCTAATTGCCTATATTGCCTGTTAACATAAAATTCAAGTATGCCAAATAG------------------------------------AAGTTT-----------------------------------AATTCCGT------------AACG-CCTTCTAGTCCCGCGATGCTCCAATAATGGTTAGAATGTATATGAAAATGTTGACCACATCCAAGTAGAGATTCAGCGCGGCAAATATGTATTCCTCGGGGCTAATCGAGTACTTATGATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
......................................T-TTCGCTTTCGTTTCT--GT-----G........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
droGri2
AACG---------------------------------CT------------------------------------TTCAA---A------------------------------TGAGATTACGC--GATTAT-------------------------------CGTAACTAG--------------------TAATAGGAAGCAAAACATTAATAAGC--------------------------------------TGCCGATTAAAATCAAAATAAGTTCTAACCAAAAT-----------G-----------------------------------TTGTTAATTGTGC------------GCCT-GATTCTAATCGCGCGAGGCGCCAATTATGGTTAGAATGTAGATGAAGATGTTGATTATATCCAAGTAAAGATTCAGTGCAGCAAATATATACTCCTCGGGACTAATCGAGTACTTGTGATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................TTAGAATGTAGATGAAGATGTT....................................................................2211.00101
...................................................................................................................................................................................................................................................................................................................................................................................................................AATGTAGATGAAGATGTTGATT................................................................2211.00101

Generated: 05/18/2015 at 06:21 PM