dsi_25433

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

AGCAGCAACAGCAGCAGGCGGTGCAGCAGCAGCAACAACAAGGCGCCCAGCAGCAACTGCAGTCCGCACAGCAGCAACAGCAGTCCCAGCAGCAATCCCAACAGCAACAGCAGATCACACCCGGTCTGGTGGGTGGAGCTGGTGGCTCCCTGAAATTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTCGAGCTC ************************************************.....(((((.((..((......)).)).)))))....((.((((((.............((((((......))))))((((((((((((((.((.(((........))).))))))).........)))))))))...))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	M025 embryo	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	M023 head
..................................................................................................................................................................................TTACTCGCAGTGATTTCATCAGC.................................................	23	3	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................................................................................................................................................CTGGAGCTGGCATCACTGTTAACTC......	25	1	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................................CGGTCTGGTGGTTTGAGCGG.............................................................................................................	20	3	5	0.60	3	1	0	2	0	0	0	0
.........................................................................................................................CGGTCTGGTGGTTTGAGC...............................................................................................................	18	2	3	0.33	1	0	0	0	1	0	0	0
.........................................................................................................................CGGTCTGGTGGCTCGAGC...............................................................................................................	18	2	3	0.33	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................CAACGAGCCCTGGAG.........................	15	1	8	0.25	2	0	0	0	0	2	0	0
......................................................................GCAGCAACAGCAGTCC....................................................................................................................................................................	16	0	5	0.20	1	0	0	0	0	0	1	0
.........................................................................................................................CGGTCTGGTGGCTCGAGCGG.............................................................................................................	20	3	5	0.20	1	0	0	1	0	0	0	0
.........................................................................................................................CGGTCTGGTGGTTTGAGCG..............................................................................................................	19	3	13	0.15	2	2	0	0	0	0	0	0
.........................................................................................................................CGGTCTGGTGGTTTGAG................................................................................................................	17	2	7	0.14	1	0	0	1	0	0	0	0
.........................................................................................................................CGGTCTGGTGGCTTGAGCG..............................................................................................................	19	3	11	0.09	1	0	0	1	0	0	0	0
..................................................................................................................................................................................................................CAACGAGCCCTGGAGCG.......................	17	2	15	0.07	1	0	0	0	0	1	0	0
.................................................................................................................ATCACAACCGGTCTGGCCG......................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	1
..............................................................................................................................................TAGCTCCCTCAAATTGGGA.........................................................................................	19	3	18	0.06	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................AAAACTCCCTGGAGCTGGCA...................	20	3	18	0.06	1	0	0	0	0	0	1	0
..................................................................................................................................................TCCCTGTAATTGGAA.........................................................................................	15	1	19	0.05	1	0	0	1	0	0	0	0
..........................................................................................................................GGTCTGGTGGCTTGAGCGG.............................................................................................................	19	3	20	0.05	1	0	0	1	0	0	0	0
..........................................................................................................................................CTCGTGGCTCCCTGAG................................................................................................	16	2	20	0.05	1	0	0	1	0	0	0	0
..........................................................................................................................GGTCTGGTGGTTTGAGCGG.............................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................GCAACGAGCCCTGGAGC........................	17	2	20	0.05	1	0	0	0	0	1	0	0

TCGTCGTTGTCGTCGTCCGCCACGTCGTCGTCGTTGTTGTTCCGCGGGTCGTCGTTGACGTCAGGCGTGTCGTCGTTGTCGTCAGGGTCGTCGTTAGGGTTGTCGTTGTCGTCTAGTGTGGGCCAGACCACCCACCTCGACCACCGAGGGACTTTAACCTTGGGGTCGTCTACCTAAAAATGAGCGTCGCTAACGCAGTCGAACGCCCGTGTTGTTCGGGACCTCGACCGTCGTGACAATTGAGCTCGAG ************************************************.....(((((.((..((......)).)).)))))....((.((((((.............((((((......))))))((((((((((((((.((.(((........))).))))))).........)))))))))...))))))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
......................................................................................................................................................................................AGCGTTGCTAACGCAAGCGA................................................	20	3	12	1.50	18	18	0	0	0
......................................................................................................................................................................................AGCGTTGCTAACGCAAGCGAA...............................................	21	3	5	1.00	5	5	0	0	0
......................................................................................................................................................................................AGCGTTGCTAACGCAGTCGGG...............................................	21	3	2	0.50	1	1	0	0	0
........................................................................................................................................................................................CGTTGCTAACGCAATCGAA...............................................	19	2	2	0.50	1	1	0	0	0
.......................................................................................................................................................................................GCGTTGCTAACGCAAGCGAA...............................................	20	3	15	0.33	5	5	0	0	0
.....................................................................................................................................................................................GAGCGTTGCTAACGC......................................................	15	1	9	0.11	1	1	0	0	0
...................................................................................................................................................................................AGGAGCGTCGCTGAAGCAGT...................................................	20	3	9	0.11	1	0	1	0	0
.......................................................................................................................................................................................GCGTTGCTAACGCAATC..................................................	17	2	10	0.10	1	1	0	0	0
......................................................TTGACGTCCGAGGTGTCGTCGT..............................................................................................................................................................................	22	3	10	0.10	1	0	0	1	0
........................................................................................................................................................................................CGTTGCTAACGCAGGCG.................................................	17	2	19	0.05	1	1	0	0	0
.....................ACGTCTTCGTCGTTGTTGT..................................................................................................................................................................................................................	19	1	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droSim2	x:6712843-6713092 +	dsi_25433	AGCAGCAACAGC---AGCAG---------------------------------G---------------------CGGTGCAGCAG---C------AGCAACAA----------------CAAGGCGCCCAGCAGCAACT-----GCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CCCAGCAGCA------------------ATCCCAA------CAGCAAC-------------------AGCAG---AT------------CACA----------------------------CCCGGTCTGGTGGGTGG------------------AGCT---------------GGTG-------------GCTCCCTGAAATTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droSec2	scaffold_24:340915-341164 +		AGCAGCAACAGC---AGCAG---------------------------------G---------------------CGGTGCAGCAG---C------AGCAACAA----------------CAAGGCGCCCAGCAGCAACT-----GCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CCCAGCAGCA------------------ATCCCAA------CAGCAAC-------------------AGCAG---AT------------CACA----------------------------CCCGGTCTGGTGGGTGG------------------AGCT---------------GGTG-------------GCTCCCTGAAATTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
dm3	chrX:7131954-7132203 +		AGCAGCAACAGC---AGCAG---------------------------------G---------------------CGGTGCAGCAG---C------AGCAACAA----------------CAAGGCGCCCAGCAGCAACT-----CCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CCCAGCAGCA------------------ATCGCAA------CAGCAAC-------------------AGCAG---AT------------AACA----------------------------CCCGGTCTGGTTGGTGG------------------AGCT---------------GGTG-------------GCTCCCTAAAATTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droEre2	scaffold_4690:16033785-16034055 +		AGCAGCAGCAGC---AGCAAC------------------------------------------AG---CAGCAATCGGTGCAGCAG---C------AGCAGCAG----------------CAAGGCGCCCAGCAGCAGCTCCACAGCAGCACAGCA------CAGCAGCAA-----------------------------------T---------------------CGGTGCAGCAGTCCCAGCAGCA------------------AGCCCAG------CAGCAGC-------------------AGCAG---AT------------CACA----------------------------CCCGGTCTGGTGGGCGG------------------AGCT---------------GGTG-------------GCTCCCTGAAACTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droYak3	X:14230019-14230292 -		AGCAGCAGCAGC---AACAGC------------------------------------------AACAGCAGCAATCGTTGCAGCAG---C------AGCAGCAG----------CAACAGCAAGGTGCCCAGCAGCAACT-----GCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CGCAGCAGCA---------------GCAATCGCAA------CAGCAACAGC----------------AACAG---AT------------CACA----------------------------CCGGGTCTGGTTGGCGG------------------AGCT---------------GGTG-------------GCTCCCTGAAATTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droEug1	scf7180000409040:4745-5009 -		AACAACAGCAGC---AGCAAC------------------------------------------AGCAACAACAAGCTGTGCAACAG---C------AGCAACAG----------CAACAG---GCTGCACAGCAGCAACA-----TCAGA-CAGCA------CAACAGCAA-----------CA---------------G---CAAT---------------------------------CGGTGCAGCA------------------ATCCCAA------CAGCAAC-------------------AGCAG---AT------------CACT----------------------------ACCGGTCTGGTTGGAGG------------------AGCT---------------GGTG-------------GATCCCTGAAGCTGGAACCACAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droBia1	scf7180000301345:8687-8942 -		AGCAGCAGCAGC---AG------------------------------------TCCGTGCAGCAG---CAGCAATCCGTGCAGCAG---C------AGCAGCAG------------------------------------------CAAA-CGGCA------CAGCAGCAA-----------CA---------------G---CAGC------------------AGGGTGTGCAGCAGGCGCAGCAGCA---------------G------CAG------CAGCAGC-------------------AGCAG---AT------------CACA----------------------------CCTGGTCTGGTGGGCGG------------------AGCA---------------GGTG-------------GCTCGCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droTak1	scf7180000415381:277416-277647 +		AGCAGCAATCCC---TGCAGC---------------------------------------------------------------AA---GCGCAACAG-------------------------------CAGCCGCAACA-----GCAGA-CTAC-----------TCCCA------CT---CA---------------G---CAAT---------------------------------CCCAGCAGCA---------------G------CAG------CAGCAGC-------------------AACAGCTGCC------------C-------------------------------ACTGGTTTAGTAGGCGG---------------AGGAGCT---------------GGTG----------GCTCCTCCTTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droEle1	scf7180000491044:1475583-1475877 -		AGCAGCAACAGC---AGCAGC------------------------------------------AA---CAGCAATCTGTGCAACAG---C------AACAGAC-CGCACAGCAGCAACAG---AATTCACAGCAGCAACA-----GCAGT-C---ACAGCAGCAGCAGCAG-----------CA---------------G---CAATCCCAACAGACC---------------------TCCCAGCAGCA---------------G------CAG------CAGCAGC-------------------AGCAG-------------------------------CATCCATCCCAGCTGAGCGCCGGTTTGGTGGGCGG------------------AGCT---------------GGTG-------------GCTCGCTGAAACTAGAGCCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droRho1	scf7180000779588:524123-524390 +		AGCAGCAACAAC---AGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGT---------------------CCGTGCAA----------------------------------------------------CAGCA-----GCAAT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGC---------AGCAACAGCA------------GTCCGTGCAGCA------------------GGCGCAG------CAGCAGC-------------------AGCAG---AT------------CACG----------------------------CCCGGTCTGGTGGGAGG------------------AGCA---------------GGTG-------------GCTCCCTGAAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droFic1	scf7180000454045:563746-563977 +		AGCAGCAGCAGC---AGCAG---------------------------------TCCGTGCAACAGCAGCAGCAATCCGTGCAGCAG---ACGGCGCAG-------------------------------CAGCAGCAACT-----GCAGG-GTGCG------C-----------------------------------------------------------------------------------AGCA---------------G------CAG------CAGCAGC-------------------AGCAG---AT------------CACC----------------------------ACCGGCTTGGTGGGCG---------------------------------------GCA-------------GCTCCCTGAAACTCGAGCCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droKik1	scf7180000302544:1161692-1161965 +		AGCAGCAGCAGC---AACAGC------------------------------------------AGCAGCAACAAAGCGTG-------------------------------------------------CAACAGCAATC-----ACAGA-AC---------CTGCAGCAG--------CAACAATCCCAGCAGCAGCAGCAGCCGT---------------------------------C---------------------------------G------CAGCAGC-------------------AGCAG---CT------------CACA----------------------------CCCGGCCTGATGGGCGGCAGTGTGGCTGGAGCAGGAGCTGGAGCAGCTCCCGCTGGCG-------------CCTCCCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droAna3	scaffold_13117:2898828-2899068 +		AGCAGCAGCAGC---AACAGC---AACAGC---------------------------------AG---CAGCAACAGT-------------------------------------------------CGCAGCAGCAGCA-----GCAGT-C---G------CAGCAGCAG-----------CA---------------A---CAGT---------------------------------CGCAGCAGCAACAGTCGCAGCAGCAG------CAACAGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------GGCGAACGCCAACAACAACCCGTTGAAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
droBip1	scf7180000396696:237837-238083 -		AGCAGCAGGCCCAGCAACAGC---AGCAGC---------------------------------AA---CAA---------CAACAA-------------------------------------------CAGCAACAACA-----ACAGT-CC---CAGCAGCAGCAGCAG-----------CA---------------A---CAGTCCCAGCAGCAGCAACAGCA------------------GCAGCA------------------GACGCAG------CAGCAGC-------------------AGCAG---G--------------------------------------------------------------------------------GGCA---------------GGGGAATGGCA---ACAACCCGTTGAAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC
dp5	XL_group1e:11064987-11065200 +		AGCAGCAACAAC---AGCAGC------------------------------------------AGC---AG---------------------------CAACAA-------------------------CAGCAACAAC------------------------AGCAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------CAGCAGC-------------------AGCAG---GTGGGAGGCGCCTCCACG----------------------------CCTGGTCTGGTGGGAGG------------------AGGC---------------AGTG-------------GCTCCCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCATTGTTAACTC-GAGCTC
droPer2	scaffold_14:502431-502635 +		AGCAGCAGCAAC---AGCAGC------------------------------------------AGC---AA------------------C------AGCAACAA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CAGCAGC-------------------AGCAG---GTGGGAGGCGCCTCCACG----------------------------CCTGGTCTGGTGGGAGG------------------AGGC---------------AGTG-------------GCTCCCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCATTGTTAACTC-GAGCTC
droWil2	scf2_1100000004590:1819312-1819555 +		AACAGCAGCAGC---AACAGC------------------------------------------AGCA------------ACAACAG---C------AGCAACAA----------------CAATCCCAGCAGCAGCAACA-----GCAAT-CCCAA------CAGCAGCAA-----------CA---------------A---CAAT---------------------------------CCCAAGCGCA------------------ATCCGG------------AC-------------------AACCG---GG------------CACA----------------------------CCGGGCTTAGCCGGAGC------------------CGGC---------------AGCA-------------ATGCATTGAAATTGGAATCACAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAACATTGTTAACTC-GAGCTC
droVir3	scaffold_13049:15441799-15442036 +		AGCAGCAACCGC---ATCAGCAGCAGCAGC---------------------------------TG---CAG---------CAACAACAGC------AGCAGCAA----------CAACAG---CAACTG---------------------------------CAGCACCAA-----------CA---------------T---CATCCACAACAGCAGCAGCAGC---------------A---GCAGCA------------------G---CAA------CAACAAC-------------------AACAG-----------------------------------------------------------CAGCCGC---------------AGCTGCA---------------AATG----------GCTC--CACCACAGCAACAACCACAACAATTGCCTG---TCCAGCAACAGCAACATCAGCA-ACAGTCACAGCAGCA---ACTGCCATTAACACCGCCAACACAGAGCCT
droMoj3	scaffold_6473:14905307-14905559 +		AACAGCAGCAGC---AGCAACAGCAGC------------------------------------AG---CAGCAA---------------------------CAA----------------CAA------CAGCAGCAACA-----GCAGC-AC---CAGCAACAGCAGCAA-----------CA---------------A---CAGC---------------------------------AGCAGCAGCA---ACTGCAACAGCAG------CAA------CAGCAAC-------------------AGCAG---CC------------CATT----------------------------GCCGCCGCTGTGAGTCC------------------AGCG---------------GGCG-------------CCGCTTTGCAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAACATTGTTAACTC-GAGCTC
droGri2	scaffold_14853:4642923-4643169 -		AACAGCAGCAAC---AACAAC------------------------------------------AGCAACAG---------CAACAG-------------------------------------------CAGCAGCAACA-----ACAG----------------CAGCAACAGCAG--CAACA---------------A---CAGC---------------------------------AACAGCAACA------------------ACAGCAG------CAGCAAC---AAGTGGCCGCAGCGGCGGCTG---C----------------TGCTGCAGCTGCA----------------C---------TGAGTCC------------------AGCT---------------GCTA-------------GT---TTAAATTTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAACATTGTTAACTC-GAGCTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

AGCAGCAACAGC---AGCAG---------------------------------G---------------------CGGTGCAGCAG---C------AGCAACAA----------------CAAGGCGCCCAGCAGCAACT-----GCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CCCAGCAGCA------------------ATCCCAA------CAGCAAC-------------------AGCAG---AT------------CACA----------------------------CCCGGTCTGGTGGGTGG------------------AGCT---------------GGTG-------------GCTCCCTGAAATTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................GCAGCAA-----------CA---------------G---CAGT---------------------------------CC.........................................................................................................................................................................................................................................................................................................	16	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

AGCAGCAACAGC---AGCAG---------------------------------G---------------------CGGTGCAGCAG---C------AGCAACAA----------------CAAGGCGCCCAGCAGCAACT-----GCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CCCAGCAGCA------------------ATCCCAA------CAGCAAC-------------------AGCAG---AT------------CACA----------------------------CCCGGTCTGGTGGGTGG------------------AGCT---------------GGTG-------------GCTCCCTGAAATTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................................................................................................................CAGCAGCA------------------ATCCCAA------CAGCAAC-------------------AGCA....................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0

dm3

AGCAGCAACAGC---AGCAG---------------------------------G---------------------CGGTGCAGCAG---C------AGCAACAA----------------CAAGGCGCCCAGCAGCAACT-----CCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CCCAGCAGCA------------------ATCGCAA------CAGCAAC-------------------AGCAG---AT------------AACA----------------------------CCCGGTCTGGTTGGTGG------------------AGCT---------------GGTG-------------GCTCCCTAAAATTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATTGGAACCCCAGCAGATGGA............................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CCAGCAGCAACT-----CCAGT-CCGCA------CAGC.....................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TCTGGTTGGTGG------------------AGCT---------------GGTG-------------GCTC.......................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGTCAGCTTGCGGGCACAACA....................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAGCAA-----------CA---------------G---CAGT---------------------------------CCCAGCAG...................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................CCAGCAGCAACT-----CCAGT-CCGCA------CAG......................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCCCAGCAGCAACT-----CCAGT-CCG.................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................GCAGCAACT-----CCAGT-CCGCA------CAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACCCCAGCAGATGGATTTT........................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGCAGCACTGTTAACTC-GAGC..	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGAACCCCAGCAGG................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................GCCCAGCAGCAACT-----CCAGT-CCGCA------.........................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................CAGT---------------------------------CCCAGCAGCA------------------ATCGC..........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................CT-----CCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CA..............................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCCCTGGAGCTGGCA....................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATTGCGTCAGCTTGCGGGC..........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................CCGGTCTGGTTGGTGG------------------AA.............................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AACA----------------------------CCCGGTCTGGTTGGTGG------------------AGCT---------------GGT.........................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGTCAGCTTGCGGGCAC........................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................GTCTGGTTGGTGG------------------AGCT---------------G...........................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAATTGGAACCCCAGCAGATGGATT..........................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTGCGGGCACAACAAG..................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGAACCCCAGCAGATGGAT...........................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................TCTGGTTGGTGG------------------AGCT---------------GGTG-------------GCTCCC.....................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCAACAGC---AGCAG---------------------------------G---------------------CGGTGCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAGCAACAGC---AGCAG---------------------------------G---------------------CGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CCCA.......................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAGCAACAGC---AGCAG---------------------------------G---------------------C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CAGCAG---C------AGCAACAA----------------CAA................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAGCAACAGC---AGCAG---------------------------------G---------------------CG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

AGCAGCAGCAGC---AGCAAC------------------------------------------AG---CAGCAATCGGTGCAGCAG---C------AGCAGCAG----------------CAAGGCGCCCAGCAGCAGCTCCACAGCAGCACAGCA------CAGCAGCAA-----------------------------------T---------------------CGGTGCAGCAGTCCCAGCAGCA------------------AGCCCAG------CAGCAGC-------------------AGCAG---AT------------CACA----------------------------CCCGGTCTGGTGGGCGG------------------AGCT---------------GGTG-------------GCTCCCTGAAACTGGAACCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................CAGTCCCAGCAGCA------------------AGCCCAG------CAGC..............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0

droYak3

AGCAGCAGCAGC---AACAGC------------------------------------------AACAGCAGCAATCGTTGCAGCAG---C------AGCAGCAG----------CAACAGCAAGGTGCCCAGCAGCAACT-----GCAGT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGT---------------------------------CGCAGCAGCA---------------GCAATCGCAA------CAGCAACAGC----------------AACAG---AT------------CACA----------------------------CCGGGTCTGGTTGGCGG------------------AGCT---------------GGTG-------------GCTCCCTGAAATTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................GCAGCAA-----------CA---------------G---CAGT---------------------------------CGCAGCAGC..................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGCAA-----------CA---------------G---CAGT---------------------------------CGCAGCAGC..................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................AGCAA-----------CA---------------G---CAGT---------------------------------CGCAGC.....................................................................................................................................................................................................................................................................................................	18	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
......AGCAGC---AACAGC------------------------------------------AACAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEug1

AACAACAGCAGC---AGCAAC------------------------------------------AGCAACAACAAGCTGTGCAACAG---C------AGCAACAG----------CAACAG---GCTGCACAGCAGCAACA-----TCAGA-CAGCA------CAACAGCAA-----------CA---------------G---CAAT---------------------------------CGGTGCAGCA------------------ATCCCAA------CAGCAAC-------------------AGCAG---AT------------CACT----------------------------ACCGGTCTGGTTGGAGG------------------AGCT---------------GGTG-------------GATCCCTGAAGCTGGAACCACAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGCAGCAGCAGC---AG------------------------------------TCCGTGCAGCAG---CAGCAATCCGTGCAGCAG---C------AGCAGCAG------------------------------------------CAAA-CGGCA------CAGCAGCAA-----------CA---------------G---CAGC------------------AGGGTGTGCAGCAGGCGCAGCAGCA---------------G------CAG------CAGCAGC-------------------AGCAG---AT------------CACA----------------------------CCTGGTCTGGTGGGCGG------------------AGCA---------------GGTG-------------GCTCGCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGCAGCAATCCC---TGCAGC---------------------------------------------------------------AA---GCGCAACAG-------------------------------CAGCCGCAACA-----GCAGA-CTAC-----------TCCCA------CT---CA---------------G---CAAT---------------------------------CCCAGCAGCA---------------G------CAG------CAGCAGC-------------------AACAGCTGCC------------C-------------------------------ACTGGTTTAGTAGGCGG---------------AGGAGCT---------------GGTG----------GCTCCTCCTTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGCAGCAACAGC---AGCAGC------------------------------------------AA---CAGCAATCTGTGCAACAG---C------AACAGAC-CGCACAGCAGCAACAG---AATTCACAGCAGCAACA-----GCAGT-C---ACAGCAGCAGCAGCAG-----------CA---------------G---CAATCCCAACAGACC---------------------TCCCAGCAGCA---------------G------CAG------CAGCAGC-------------------AGCAG-------------------------------CATCCATCCCAGCTGAGCGCCGGTTTGGTGGGCGG------------------AGCT---------------GGTG-------------GCTCGCTGAAACTAGAGCCCCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGCAGCAACAAC---AGCAACAGCAGCAGCAGCAGCAGCAACAGCAGCAGCAGT---------------------CCGTGCAA----------------------------------------------------CAGCA-----GCAAT-CCGCA------CAGCAGCAA-----------CA---------------G---CAGC---------AGCAACAGCA------------GTCCGTGCAGCA------------------GGCGCAG------CAGCAGC-------------------AGCAG---AT------------CACG----------------------------CCCGGTCTGGTGGGAGG------------------AGCA---------------GGTG-------------GCTCCCTGAAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGCAGCAGCAGC---AGCAG---------------------------------TCCGTGCAACAGCAGCAGCAATCCGTGCAGCAG---ACGGCGCAG-------------------------------CAGCAGCAACT-----GCAGG-GTGCG------C-----------------------------------------------------------------------------------AGCA---------------G------CAG------CAGCAGC-------------------AGCAG---AT------------CACC----------------------------ACCGGCTTGGTGGGCG---------------------------------------GCA-------------GCTCCCTGAAACTCGAGCCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCAGCAGCAGC---AACAGC------------------------------------------AGCAGCAACAAAGCGTG-------------------------------------------------CAACAGCAATC-----ACAGA-AC---------CTGCAGCAG--------CAACAATCCCAGCAGCAGCAGCAGCCGT---------------------------------C---------------------------------G------CAGCAGC-------------------AGCAG---CT------------CACA----------------------------CCCGGCCTGATGGGCGGCAGTGTGGCTGGAGCAGGAGCTGGAGCAGCTCCCGCTGGCG-------------CCTCCCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AGCAGCAGCAGC---AACAGC---AACAGC---------------------------------AG---CAGCAACAGT-------------------------------------------------CGCAGCAGCAGCA-----GCAGT-C---G------CAGCAGCAG-----------CA---------------A---CAGT---------------------------------CGCAGCAGCAACAGTCGCAGCAGCAG------CAACAGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------GGCGAACGCCAACAACAACCCGTTGAAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................C---G------CAGCAGCAG-----------CA---------------A---CAGT---------------------------------CGCA.......................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAGCGATTGCGTCAGCTTGCGGGC..........................................	26	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAGCCCTGGAGCTGGC.....................	19	1	1.00	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................AACAGTCGCAGCAGCAG------CA.........................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................GCAG------CAACAGCAGCAGCAGC-------------------........................................................................................................................................................................................................................................	20	20	0.25	5	0	5	0	0	0	0
........................................................................AACAGT-------------------------------------------------CGCAGCAGCAGCA-----..........................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	1
.......GCAGC---AACAGC---AACAGC---------------------------------AG---CAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	1	2	0	0	0	0
......................................................................................................................................................................................................................................................................GCAG------CAACAGCAGCAGCAGC-------------------AGC.....................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................G------CAACAGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------GG..........................................................................................................................	23	8	0.13	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................AGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------GGCG........................................................................................................................	20	19	0.11	2	1	0	0	0	0	1
....................................................................................................................................................................................................................................................................................AGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------GGC.........................................................................................................................	19	20	0.10	2	0	1	0	0	0	1
.GCAGCAGCAGC---AACAGC---AACAGC---------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	1	0	0	0	1
.........AGC---AACAGC---AACAGC---------------------------------AG---CAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	1	0	0	0	1
...........................................................................AGT-------------------------------------------------CGCAGCAGCAGCA-----GCA.......................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	1	0	0	0	0
..........................................................................CAGT-------------------------------------------------CGCAGCAGCAGCA-----GC........................................................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................CAGCAG------CAACAGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------G...........................................................................................................................	27	17	0.06	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................GCAGCAGCAG------CAACAGCA...................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................GCAG------CAACAGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------G...........................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
......AGCAGC---AACAGC---AACAGC---------------------------------AG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
AGCAGCAGCAGC---AACAGC---AACAGC---------------------------------AG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................AGCAGCAGCAGC-------------------AGCA--------------------------------------------------------------------------------------------------------GG..........................................................................................................................	18	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................AG------CAACAGCAGCAGCAGC-------------------........................................................................................................................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
..................AGC---AACAGC---------------------------------AG---CAGCAACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...AGCAGCAGC---AACAGC---AACAGC---------------------------------A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..CAGCAGCAGC---AACAGC---AAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...AGCAGCAGC---AACAGC---AACAGC---------------------------------AG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
..CAGCAGCAGC---AACAGC---AACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.......GCAGC---AACAGC---AACAGC---------------------------------AG---CAGCAAC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0

droBip1

AGCAGCAGGCCCAGCAACAGC---AGCAGC---------------------------------AA---CAA---------CAACAA-------------------------------------------CAGCAACAACA-----ACAGT-CC---CAGCAGCAGCAGCAG-----------CA---------------A---CAGTCCCAGCAGCAGCAACAGCA------------------GCAGCA------------------GACGCAG------CAGCAGC-------------------AGCAG---G--------------------------------------------------------------------------------GGCA---------------GGGGAATGGCA---ACAACCCGTTGAAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCACTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total
No Reads

dp5

AGCAGCAACAAC---AGCAGC------------------------------------------AGC---AG---------------------------CAACAA-------------------------CAGCAACAAC------------------------AGCAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------CAGCAGC-------------------AGCAG---GTGGGAGGCGCCTCCACG----------------------------CCTGGTCTGGTGGGAGG------------------AGGC---------------AGTG-------------GCTCCCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCATTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGCTGGAACCGCAGCAGATGGA............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.....................................................................................................CAA-------------------------CAGCAACAAC------------------------AGCAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------..................................................................................................................................................................................................................................................................	27	6	0.50	3	0	0	0	0	0	0	0	3	0	0
.......................................................................................................................................................................................A---------------G------------------------------------------------------------------------CAG------CAGCAGC-------------------AGCAG---GTGG............................................................................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0
...........C---AGCAGC------------------------------------------AGC---AG---------------------------CAACAA-------------------------C.........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	2	0	0	0	0	0
...AGCAACAAC---AGCAGC------------------------------------------AGC---AG---------------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	2	0	0	0	0	0	0	0	0
....GCAACAAC---AGCAGC------------------------------------------AGC---AG---------------------------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................AACAA-------------------------CAGCAACAAC------------------------AGCAGCAA-----------C....................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................ACAAC------------------------AGCAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------CAGCAG............................................................................................................................................................................................................................................................	25	11	0.09	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................GCAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------CAGCAGC-------------------AGCAG---G...............................................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................AGCAACAAC------------------------AGCAGCAA-----------CA---------------G------------------------------------------------------------------------C..........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCAA-----------CA---------------G------------------------------------------------------------------------CAG------CAGCAGC-------------------AGC.....................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................GCAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------CAGCAGC-------------------AGC.....................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................CAA-------------------------CAGCAACAAC------------------------AGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............AGCAGC------------------------------------------AGC---AG---------------------------CAACAA-------------------------CAGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................CAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------CAGCAGC-------------------A.......................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................AGCAACAAC------------------------AGCAGCAA-----------CA---------------G------------------------------------------------------------------------...........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0
................................................................GC---AG---------------------------CAACAA-------------------------CAGCAACAAC------------------------AG......................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................CAG------CAGCAGC-------------------AGCAG---GTG.............................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................CAACAAC------------------------AGCAGCAA-----------CA---------------G------------------------------------------------------------------------CAG------..................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....CAACAAC---AGCAGC------------------------------------------AGC---AG---------------------------CAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	1	0	0
..................AGC------------------------------------------AGC---AG---------------------------CAACAA-------------------------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........AAC---AGCAGC------------------------------------------AGC---AG---------------------------CAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

AGCAGCAGCAAC---AGCAGC------------------------------------------AGC---AA------------------C------AGCAACAA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CAGCAGC-------------------AGCAG---GTGGGAGGCGCCTCCACG----------------------------CCTGGTCTGGTGGGAGG------------------AGGC---------------AGTG-------------GCTCCCTGAAGCTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAGCATTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCATTGTTAACTC-GTT...	21	1	1.00	1	0	0	0	1	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGATGGATTTTTACTC...................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCATTGTTAACTC-GTTT..	22	2	0.50	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCATTGTTAACTG-T.....	19	2	0.50	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCAGCATTGTTAACTC-TGT...	21	5	0.20	1	0	0	0	0	1	0
.................................................................................................................................C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CAGCAGC-------------------........................................................................................................................................................................................................................................	19	20	0.15	3	3	0	0	0	0	0
.....................................................................AA------------------C------AGCAACAA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------..................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0
.....................................................................AA------------------C------AGCAACAA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------C..........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
......................................................................................................AA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CAGCA.............................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0
.......................................................................................................A-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CAGCAGC-------------------AG......................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
..................................................................................................CAACAA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CA................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.....................................................................................................CAA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CAGCAGC-------------------........................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.....................................................................................................CAA-------------------------C---------------------------------AGCAGCAA-----------------------------------------------------------------------------------------------------CAG------CAGCAGC-------------------A.......................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
....................C------------------------------------------AGC---AA------------------C------AGCAACAA-------------------------C---------------------------------AGCA....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0

droWil2

AACAGCAGCAGC---AACAGC------------------------------------------AGCA------------ACAACAG---C------AGCAACAA----------------CAATCCCAGCAGCAGCAACA-----GCAAT-CCCAA------CAGCAGCAA-----------CA---------------A---CAAT---------------------------------CCCAAGCGCA------------------ATCCGG------------AC-------------------AACCG---GG------------CACA----------------------------CCGGGCTTAGCCGGAGC------------------CGGC---------------AGCA-------------ATGCATTGAAATTGGAATCACAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAACATTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.........................................................................................................................................................CAA------CAGCAGCAA-----------CA---------------A---CAAT---------------------------------C..........................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0	0
................................................................................CAACAG---C------AGCAACAA----------------CAATC..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	12	0.08	1	0	0	1	0	0
AACAGCAGCAGC---AACAGC------------------------------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1
.ACAGCAGCAGC---AACAGC------------------------------------------AGCA------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...................GC------------------------------------------AGCA------------ACAACAG---C------AGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
...............AACAGC------------------------------------------AGCA------------ACAACAG---C------AGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...............AACAGC------------------------------------------AGCA------------ACAACAG---C------A..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0

droVir3

AGCAGCAACCGC---ATCAGCAGCAGCAGC---------------------------------TG---CAG---------CAACAACAGC------AGCAGCAA----------CAACAG---CAACTG---------------------------------CAGCACCAA-----------CA---------------T---CATCCACAACAGCAGCAGCAGC---------------A---GCAGCA------------------G---CAA------CAACAAC-------------------AACAG-----------------------------------------------------------CAGCCGC---------------AGCTGCA---------------AATG----------GCTC--CACCACAGCAACAACCACAACAATTGCCTG---TCCAGCAACAGCAACATCAGCA-ACAGTCACAGCAGCA---ACTGCCATTAACACCGCCAACACAGAGCCT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................................................................................................................AACAG---CAACTG---------------------------------CAGCACCAA-----------CA---------------T---C...............................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGCCATTAACACCGCCAACACA......	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....CAACCGC---ATCAGCAGCAGCAGC---------------------------------TG---C......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACACCGCCAACACAGAGCC.	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA---ACTGCCATTAACACCGCCAACACA......	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATTAACACCGCCAACACAG.....	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CCAA-----------CA---------------T---CATCCACAACAGCAGC................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCACAGCAGCA---ACTGCCA.......................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................GCACCAA-----------CA---------------T---CATCCACAACAGCAG.................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAACACCGCCAACACAGAGC..	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................CCGC---------------AGCTGCA---------------AATG----------GCTC--CAC.....................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.....................................................................................................................................................................CACCAA-----------CA---------------T---CATCCACAACAGCAGCA...............................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCA---ACTGCCATT.....................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CAA-----------CA---------------T---CATCCACAACAGCAGCA...............................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACCACAACAATTGCCT...........................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................AA----------CAACAG---CAACTG---------------------------------CAGCACCAA-----------.....................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCCACAACAGCAGCAGCAGC---------------A---GCAGCA------------------G---C..........................................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................GCAGCAGCAGC---------------------------------TG---CAG---------CAACAACAGC------...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................A---------------T---CATCCACAACAGCAGCAGCA............................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CAA----------CAACAG---CAACTG---------------------------------CAGCAC...................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................A---------------T---CATCCACAACAGCAGCAGCAGC---------------...........................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TCCACAACAGCAGCAGCAGC---------------A---.......................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................AACAAC-------------------AACAG-----------------------------------------------------------CAGCCGC---------------AGC...............................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CCACAACAGCAGCAGCAGC---------------A---GCAGCA------------------...............................................................................................................................................................................................................................................................................	26	9	0.11	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................AGCA------------------G---CAA------CAACAAC-------------------AACA....................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................G---CAG---------CAACAACAGC------AGCAGCAA----------CAACAG---C...............................................................................................................................................................................................................................................................................................................................................................................................................................	29	10	0.10	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................ACAGCAGCAGCAGC---------------A---GCAGCA------------------...............................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CAACAGCAGCAGCAGC---------------A---GC.....................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................CAACAACAGC------AGCAGCAA----------CAACAG---CA..............................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GC---------------A---GCAGCA------------------G---CAA------CAACAAC-------------------AACAG-----------------------------------------------------------CAG.....................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAGC---------------A---GCAGCA------------------G---CAA------CAACA.............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................CAACAGCAGCAGCAGC---------------A---GCAGCA------------------G---CA.........................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................AACAACAGC------AGCAGCAA----------CA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................CA------------------G---CAA------CAACAAC-------------------AACAG-----------------------------------------------------------CAG.....................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................ACAACAGC------AGCAGCAA----------CAACAG---C...............................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AGCAGCAGCAGC---------------A---GCAGCA------------------G---CAA------CAACA.............................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................A------------------G---CAA------CAACAAC-------------------AACAG-----------------------------------------------------------CAGC....................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................CACAACAGCAGCAGCAGC---------------A---.......................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
................................................................................................................................................................................................................................C---------------A---GCAGCA------------------G---CAA------CAACAAC-------------------........................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................CAG---------CAACAACAGC------AGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GC---------------A---GCAGCA------------------G---CAA------CAACAAC-------------------AACA....................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................G---CAG---------CAACAACAGC------AGCAGCAA----------CAA......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................GCAGCA------------------G---CAA------CAACAAC-------------------AACAG-----------------------------------------------------------CA......................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................A---GCAGCA------------------G---CAA------CAACAAC-------------------AACA....................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................AACAGCAGCAGCAGC---------------A---GCAGCA------------------G---CAA------..................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................AACAACAGC------AGCAGCAA----------CAACAG---CAAC............................................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................ACAACAGCAGCAGCAGC---------------A---GC.....................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................G---CAA------CAACAAC-------------------AACAG-----------------------------------------------------------CAGC....................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGC---------------A---GCAGCA------------------G---CAA------CAACAAC-------------------........................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CCACAACAGCAGCAGCAGC---------------A---.......................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AACAGCAGCAGC---AGCAACAGCAGC------------------------------------AG---CAGCAA---------------------------CAA----------------CAA------CAGCAGCAACA-----GCAGC-AC---CAGCAACAGCAGCAA-----------CA---------------A---CAGC---------------------------------AGCAGCAGCA---ACTGCAACAGCAG------CAA------CAGCAAC-------------------AGCAG---CC------------CATT----------------------------GCCGCCGCTGTGAGTCC------------------AGCG---------------GGCG-------------CCGCTTTGCAACTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAACATTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................GTGAGTCC------------------AGCG---------------GGCG-------------CCGC.......................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................AACA-----GCAGC-AC---CAGCAACAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	1	0
........................................................................................................................CAA------CAGCAGCAACA-----GCAGC-AC---C..............................................................................................................................................................................................................................................................................................................................................................................................	22	8	0.25	2	0	0	0	0	2	0
...........................................................................................................................................A-----GCAGC-AC---CAGCAACAGCAGCAA-----------CA---------------....................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0
..................................................................................................................................................................CAGCAGCAA-----------CA---------------A---CAGC---------------------------------AGC........................................................................................................................................................................................................................................................................................................	19	20	0.20	4	0	0	0	0	4	0
.......................................................................................................................................CAACA-----GCAGC-AC---CAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................A---ACTGCAACAGCAG------CAA------CAG...............................................................................................................................................................................................................................................................	20	9	0.11	1	0	0	0	0	1	0
AACAGCAGCAGC---AGCAACAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	2	0	0	0	0	0
.................................................................................................................................CAGCAGCAACA-----GCAGC-AC---C..............................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	2	0
...............................................................................................................................................................CAACAGCAGCAA-----------CA---------------A---CAGC---------------------------------...........................................................................................................................................................................................................................................................................................................	19	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................A------CAGCAGCAACA-----GCAGC-AC---CA.............................................................................................................................................................................................................................................................................................................................................................................................	21	10	0.10	1	0	0	0	0	1	0
..............................................................................................................................................................GCAACAGCAGCAA-----------CA---------------A---CAGC---------------------------------...........................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
......................................................................................................AA----------------CAA------CAGCAGCAACA-----GCAGC-....................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................CAGCAA-----------CA---------------A---CAGC---------------------------------AGCAGCAGCA---..............................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................ACAGCAG------CAA------CAGCAAC-------------------AGCA....................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................AGC------------------------------------AG---CAGCAA---------------------------CAA----------------CAA------CAGCAGCAACA-----G.........................................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	1	0
.......................................................................................................................................................................GCAA-----------CA---------------A---CAGC---------------------------------AGCAGCA....................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................CAGCAGCAA-----------CA---------------A---CAGC---------------------------------AGCAGC.....................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.........................GC------------------------------------AG---CAGCAA---------------------------CAA----------------CAA------CAGCAGCAC.................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.........................................................................A---------------------------CAA----------------CAA------CAGCAGCAACA-----..........................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................AGCAGCAGCA---ACTGCAACA.....................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.........................................................................A---------------------------CAA----------------CAA------CAGCAGCAACA-----GC........................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0
.....................................................................AGCAA---------------------------CAA----------------CAA------CAGCAGCAACA-----GC........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
................................................................................................................................................................................................................................................................GCAACAGCAG------CAA------CAGCAAC-------------------A.......................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................G---CAGCAA---------------------------CAA----------------CAA------CAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................GC------------------------------------AG---CAGCAA---------------------------CAA----------------CAA------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..................AACAGCAGC------------------------------------AG---CAGCAA---------------------------CA....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.......................................................................CAA---------------------------CAA----------------CAA------CAGCAGCAACA-----GCAGC-....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0

droGri2

AACAGCAGCAAC---AACAAC------------------------------------------AGCAACAG---------CAACAG-------------------------------------------CAGCAGCAACA-----ACAG----------------CAGCAACAGCAG--CAACA---------------A---CAGC---------------------------------AACAGCAACA------------------ACAGCAG------CAGCAAC---AAGTGGCCGCAGCGGCGGCTG---C----------------TGCTGCAGCTGCA----------------C---------TGAGTCC------------------AGCT---------------GCTA-------------GT---TTAAATTTGGAACCGCAGCAGATGGATTTTTACTCGCAGCGATTGCGTCAGCTTGCGGGCACAACAAGCCCTGGAGCTGGCAACATTGTTAACTC-GAGCTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAATTTGGAACCGCAGCAGA................................................................................	21	1	1.00	1	0	1
..................................................................................................................................................................................................................................................CAGCAACA------------------ACAGCAG------CAGC..............................................................................................................................................................................................................................................................	19	20	0.10	2	2	0
...................................................................................................................................GCAGCAACA-----ACAG----------------CAGCAACAGCA...........................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0
...................................................................................................................................GCAGCAACA-----ACAG----------------CAGCAACAGCAG--CA......................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0

dsi_25433

x:6712893-6713042 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-42.9	-42.6	-42.4