ID:

dsi_25425

 Coordinate:

3l:11473155-11473304 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-33.9 -33.7 -33.6

Flybase annnotation

exon [3l_11473305_11473398_+]; CDS [3l_11473305_11473398_+]; intron [3l_11472603_11473304_+]; Antisense to intron [3l_11471601_11475771_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ATCCTCTCTTATCACATGAACGTGTTTTAATAGTCGTCTGAGCTGGCGTGTCTGTGGTCATGTGTAAACCACTTAGAACGTCCACCGGTGACGCATGCAAGTGAACAGCCCAAACAGCTGAATCCACAGCTGATTTGCTCGATGCTAATATAATTCCGAGTATCGTAATAGCCTAAAGTACAATTTGTGCAACTCCCCAGGTTAACGGCACCGATACCGCTGTCCATGGAGTGTTCCGACGTCGCAATCT
**************************************************.(((.((.(((((((..(((................))).)))))))...((.....)).((((((((((......)))))).))))..(((((((............)))))))............(((((...)))))....)).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M025
embryo
 O001
Testis
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.........................................................TCATTTGTATACGACTTAGA............................................................................................................................................................................. 20 3 9 2.56 23 0 21 0 2 0 0 0 0
........................................................................................................................................................................................................................................GTTCCGACGTCGCAATCT 18 0 1 1.00 1 0 0 0 0 1 0 0 0
......................................................................ACTTAGAACGTCCACCGGTGA............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0
............................................................................................................................CACGGCTGATTTGCTCGATGC......................................................................................................... 21 1 1 1.00 1 0 0 0 1 0 0 0 0
........................TTTTAATGGTCGTCTGAGCTG............................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................TCGCAGGTTAACGGCACCGATACCGCT............................. 27 2 1 1.00 1 1 0 0 0 0 0 0 0
...........................................................ATGTGTAAACCACTTAGAACG.......................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0
.......CTTATCACATGAACGTGTTTTA............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................GTCCATGGAGTGTTCCGACGTCG...... 23 0 1 1.00 1 1 0 0 0 0 0 0 0
.....CTCTTATCATATGAACGTGTT................................................................................................................................................................................................................................ 21 1 1 1.00 1 0 0 0 0 0 0 0 1
..............................................CGTGTCGGTGGTCAT............................................................................................................................................................................................. 15 1 8 0.13 1 0 1 0 0 0 0 0 0
.....................................................................................CGGTGACGCATGAAGCTGA.................................................................................................................................................. 19 3 11 0.09 1 0 0 1 0 0 0 0 0
......................................TGAGCTGGCGTGACT..................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 1 0 0 0 0 0
....................................................................................................................................ATCTGCTCGATGCTAAG..................................................................................................... 17 2 16 0.06 1 0 0 1 0 0 0 0 0

Anti-sense strand reads

TAGGAGAGAATAGTGTACTTGCACAAAATTATCAGCAGACTCGACCGCACAGACACCAGTACACATTTGGTGAATCTTGCAGGTGGCCACTGCGTACGTTCACTTGTCGGGTTTGTCGACTTAGGTGTCGACTAAACGAGCTACGATTATATTAAGGCTCATAGCATTATCGGATTTCATGTTAAACACGTTGAGGGGTCCAATTGCCGTGGCTATGGCGACAGGTACCTCACAAGGCTGCAGCGTTAGA
**************************************************.(((.((.(((((((..(((................))).)))))))...((.....)).((((((((((......)))))).))))..(((((((............)))))))............(((((...)))))....)).)))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
................................................................................................................................CGACTAAACGAGCTACGGTTA..................................................................................................... 21 1 1 1.00 1 1 0 0 0 0
............................................................................................................................................................................................CGTTGAGGGGTCCAATTGCCG......................................... 21 0 1 1.00 1 0 1 0 0 0
..............................................................................................TACGTTCACTTGTCGGGTTTG....................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................................................AGGGGTCCAATTGCCGTGGCT.................................... 21 0 1 1.00 1 0 1 0 0 0
........................................................................................................................................................................ATCGGATTTCATGTTAAACAC............................................................. 21 0 1 1.00 1 1 0 0 0 0
......................................................................................................................................................................................................................ATGGCGACAGGTACCTCGCGA............... 21 2 1 1.00 1 0 0 1 0 0
....................................................................GGTGAATCGTGCAGG....................................................................................................................................................................... 15 1 6 0.17 1 0 0 0 1 0
.....................................................................................................................................................................................................................TATAGTGACAGGTACCT.................... 17 2 16 0.06 1 0 0 0 0 1
................................................................................................................................................................................TCCTGTTAATCACGTTG......................................................... 17 2 17 0.06 1 0 0 0 1 0
.......................................................................................................................................................................................................................AGGCGACAGGTACCT.................... 15 1 19 0.05 1 0 0 0 0 1
.........................................................................................................................................................................................ACACGATGAGTTGTCCAAT.............................................. 19 3 19 0.05 1 0 0 0 0 1
....................................................................................................................................................................................................................CTATGGCGATAGGTTCGT.................... 18 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................................................CATTAAGGCTCATTGC..................................................................................... 16 2 20 0.05 1 0 0 0 0 1

Generated: 04/24/2015 at 09:52 AM