ID:

dsi_25424

Coordinate:

2l:13946142-13946380 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-4.8 -4.3 -4.1 -4.1

Flybase annnotation

three_prime_UTR [2l_13945970_13946321_+]; exon [2l_13945421_13946321_+]

No Repeatable elements found

Sense Strand Reads

######################################################################################################################################################################################################################################-------------------------------------------------------------------------------------------------------------
AAGTTGCATCAGCTCTTCATTCATGGTTACAAACCATATTTCTGATTTGATTACAAGGCTACATCGAAAATGTTTTTTTAATATTTCTTCCATTGTATTAAACAAATAATTATAATATAGGAGAAACCAACTAAACTAGATGATATATGTTTTTTTTACTAATGCGCGTATTCTTACACCATTCATGTTTTAATAAAAAGACACTTGCGAATACATACAAGTTGATATGTAAAACACCAACATACCAATATTAAAGCTGAATGGTTTATTTGTATAATCAATATTATAGAATTTAACATCGGAATTGGATTCAAAGCAAGACGGATTACCAGACGTTAA
*************************************************************************************************************((...........(((((............((((....(((......(((........))).....)))....)))))))))........))******************************************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
SRR618934
dsim w501 ovaries
SRR553486
Makindu_3 day-old ovaries
SRR902009
testis
SRR902008
ovaries
O001
Testis
SRR553487
NRT_0-2 hours eggs
SRR553488
RT_0-2 hours eggs
O002
Head
.....................................................................................................................................................................................................................................................................................................................TTCAAAGCAAGACGGATTACCAGACGT... 27 0 1 3.00 3 0 3 0 0 0 0 0 0 0
..............................................................................................................................................................................TACACCATTCATGTTTTAATAAAAAGA.......................................................................................................................................... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................................TGGAATCAAAGCAAGACGGATTACCAGA...... 28 1 1 2.00 2 2 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................TATTATAGAATTTAACATCAGAATTGGAA............................. 29 2 1 2.00 2 2 0 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................ACATCAGAATTGGAATCAAAGCAAGA.................. 26 2 1 1.00 1 1 0 0 0 0 0 0 0 0
.............................................................................................................TTATAATATAGGAGAAACCAACTAAACTAGA....................................................................................................................................................................................................... 31 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TACGCCATTCATGTTTTAATAAAAAGA.......................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................................GGAATTGGATTCAAAGCAAGACGGA.............. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................ACCATATTCCTGATTTGATTACAAGGC........................................................................................................................................................................................................................................................................................ 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................TTAACATCGGAATTGGAATCAAAGCCAGA.................. 29 2 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................TCTTCCATTGTATTAAAAA........................................................................................................................................................................................................................................... 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TTCAAAGCAAGACGGATTACCAGA...... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0
........................................................................................................................................................................................................TAAATTGCGAATACATACAAGTTGATA................................................................................................................ 27 3 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................TCAATATTATAGAATTTAACATCGGAAT.................................. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................................................................................................TTGGATTCAAAGCAAGACGGATTACCA........ 27 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................TATTTGTATAATCAATATTATAGAATT.............................................. 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................................TAATCAATATTATAGAATTTAACATCGGA.................................... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................TTCAAAGCAAGACGGATT............ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TCGGAATTGGATTCAGAGCAAGACGGAT............. 28 1 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TCGGAATTGGATTCAAAGCAAGACGGAT............. 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................TACAAGTTGATATGTAAAACACAAAAA................................................................................................. 27 2 1 1.00 1 0 0 0 0 0 0 0 1 0
................................................................................................................................AACTAAACTAGATGATATATGT............................................................................................................................................................................................. 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..........................................TGATTTGATTACAAGGCTACATCGAAAA............................................................................................................................................................................................................................................................................. 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................................................................................................TATAGAATTTAACATCGGAATTGGAA............................. 26 1 1 1.00 1 0 0 0 0 1 0 0 0 0
....TGCATCAGCTCTTCATTCATGGTTCCAAAC................................................................................................................................................................................................................................................................................................................. 30 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..................................................................................................................ATATAGGAGAAACCAACTAAACTAGA....................................................................................................................................................................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................TAACATCGGAATTGGAATCAAAGCCAGA.................. 28 2 1 1.00 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................................TCAAAGCAAGACGGATTACCAGACGT... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................................TACAAGTTGATATGTAAAAAACCAACA................................................................................................. 27 1 1 1.00 1 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................................................................................TCGGAATTGGATTCAAAGCAAGACGGA.............. 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0
................................................................................................................................................................................................................................................................................................................TTGGATTCAAAGCAAGACGGATTACC......... 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................TGCGAATACATACAAGTTGATATG.............................................................................................................. 24 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................TATATGTTTTTTTTACTAATGCGCGTA......................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
................................................................................................................TAATATAGGAGAAACCATCTAAACTAGA....................................................................................................................................................................................................... 28 1 1 1.00 1 0 0 1 0 0 0 0 0 0
..................................................................................ATTTCTTCCATTGTATTA............................................................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................AACTAAAGTAGATGATTTAT............................................................................................................................................................................................... 20 2 2 0.50 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................GACTGGTTTATTTGTATAAGA............................................................ 21 3 3 0.33 1 0 0 0 0 0 0 1 0 0
...............TTCATTCATGGTGGCGAACC................................................................................................................................................................................................................................................................................................................ 20 3 3 0.33 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................CTAAAGTAGATGATTTATGT............................................................................................................................................................................................. 20 2 4 0.25 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................ACTAAAGTAGATGATA.................................................................................................................................................................................................. 16 1 4 0.25 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................CATGGGAGTTGGATTCA.......................... 17 2 20 0.15 3 0 0 1 0 0 0 0 2 0
.....................................................................................................................................................................................................................................................................................................TACCATGGGAGTTGGATTCA.......................... 20 3 7 0.14 1 0 0 0 0 0 0 0 1 0
........................................................GGCTAGATCGAAAAT............................................................................................................................................................................................................................................................................ 15 1 10 0.10 1 0 1 0 0 0 0 0 0 0
..................................................TCACCAGGGTACATCGAAAA............................................................................................................................................................................................................................................................................. 20 3 19 0.05 1 0 0 0 0 0 0 0 1 0
..............................AAACCATATTTCTGTGTT................................................................................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TTCAACGTAGTCGAGAAGTAAGTACCAATGTTTGGTATAAAGACTAAACTAATGTTCCGATGTAGCTTTTACAAAAAAATTATAAAGAAGGTAACATAATTTGTTTATTAATATTATATCCTCTTTGGTTGATTTGATCTACTATATACAAAAAAAATGATTACGCGCATAAGAATGTGGTAAGTACAAAATTATTTTTCTGTGAACGCTTATGTATGTTCAACTATACATTTTGTGGTTGTATGGTTATAATTTCGACTTACCAAATAAACATATTAGTTATAATATCTTAAATTGTAGCCTTAACCTAAGTTTCGTTCTGCCTAATGGTCTGCAATT
******************************************************************************************************************************************((...........(((((............((((....(((......(((........))).....)))....)))))))))........))*************************************************************************************************************
Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
SRR902009
testis
SRR553487
NRT_0-2 hours eggs
SRR553486
Makindu_3 day-old ovaries
M024
male body
SRR618934
dsim w501 ovaries
SRR553485
Chicharo_3 day-old ovaries
.....................................................................................................................................................................................................................................ATTTTGTGGATGTATGGTAATAGT...................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................ATAATTGGTTTATTAATAT................................................................................................................................................................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................AAAAATATTGATTAGGCGCAT......................................................................................................................................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0
....................................................................................................................................................................................TTAGTACAATATTGTTTTTCTGT........................................................................................................................................ 23 3 2 0.50 1 0 0 1 0 0 0 0
....AGGTAGTCGAAAAGTATGTACC......................................................................................................................................................................................................................................................................................................................... 22 3 2 0.50 1 0 1 0 0 0 0 0
....ACGGTGTCGAGAAGTAAGT............................................................................................................................................................................................................................................................................................................................ 19 2 4 0.25 1 0 0 0 0 0 1 0
...................................................................................................................................................AAAAAAAAAATAATTAGGCGCAT......................................................................................................................................................................... 23 3 4 0.25 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................................................................................................................................................AAGTTTCATTCTGCCTTA............ 18 2 6 0.17 1 0 0 0 0 1 0 0
........................................................................AAAAAAATTAGAAAGAAG......................................................................................................................................................................................................................................................... 18 1 8 0.13 1 0 0 1 0 0 0 0
...................................................................................................................................................AAAAAAAAAAAGATTCCGCGCAT......................................................................................................................................................................... 23 3 8 0.13 1 1 0 0 0 0 0 0
.TCAAGGTAGTCGGGAAGT................................................................................................................................................................................................................................................................................................................................ 18 2 9 0.11 1 0 0 0 0 1 0 0
........................................................................AAAAAAATTAAAAACAAGGTAACT................................................................................................................................................................................................................................................... 24 3 9 0.11 1 0 0 0 0 0 0 1
.TCTACCTAGTCAAGAAGTAA.............................................................................................................................................................................................................................................................................................................................. 20 3 13 0.08 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................................................................................................................................CTTAGTTGCGTTCTGCCGA............. 19 3 18 0.06 1 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2l:13946092-13946430 + dsi_25424 AAGTT--GCAT---CA-GCT-----------------------------------------------------C-T--TCATTCATGGTTACAAACCATATT--TCTGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------TGTTT--TTTTAATATTTCTTCCATTGTATTAAACAAATA--ATTATAATATA-----GGAGAAACCAACTAAACTAGA-TG-ATATAT---GTTTTTTTTA-CTAATGCG-CGTATTCTTACACCATTCATGTTTTAATAAAAAGACAC--TTGCGAATACATACAAGTTGATATGTAAA-ACACCAACA---TACCAA--TATTAAAGCTGAATGGTTT--------------------------------------------------------ATTTGTATA-----------ATCAATAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------ATTGGATT---------CA-----AAGCAAGACGGATTA--------CCAGACGTTAA
droSec2 scaffold_3:624609-624939 + AAGTT--GCAT---CA-GCT-----------------------------------------------------C-T--TCATCCATGGTTACAAACCATATT--TCTGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------TGTTG--TTTAAATATTTCTTCCATTGTATTAAACATAAA--ATTATAATATA-----GGAGAAATCAACTAAACTAGA-TG-ATATAT---GATTTTTT-T-CTAATGCG-CGTATTCTTACACCATTCATGTTTTAATAAA---------TTGCGAATACATACAATTTGATATGTAAA-ACACCAACA---TACCAA--TATTAAAGCTGAATGGTTT--------------------------------------------------------ATTTGTATA-----------ATCAATAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------ATTGGATT---------CA-----AAGCAAGACGGATTA--------CCAGACGTTAA
dm3 chr2L:14365352-14365675 + T------------------------------------------------------------------------------CATCCATGGTTACAAACCATATTCTCCTGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------TGTTG--TTTAAATATTTCTTCCATTGTATTAAACATATA--ATTATAATATA-----GGAGAAATCAACTAAACTAGA-TG-ATATAT---GATTTTTT-A-CTAATGCG-AGTGTTCATACACCATTCATGATTTAATAAAAATGCACACTTGCGAATACATACAAGTTGATATGTAAA-ACACCAACA---TACTAA--TATTAAATCTGAATGTTTT--------------------------------------------------------ATTTGTATA-----------TTCAATAT---------TT-----------------------CT--------------------------------------------------------------------------------------------------------------------------AGAACTTTAA-ATCGGA------------------ATTGGAATCAAAGGGTG-----------------------TAAA--GCAAGACGTTAA
droEre2 scaffold_4929:6118423-6118641 + ATGC-----AT---CA-GC----------------------------------------------------A-CTT--TCATCCATGGTTTGAAACCATATT--TCTGTT----TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------TG--TTTAAATATTTCTTTCATTGCATTAGACATAAA--AATATA-TATA-----GA-----ATAACAAAACTAGA-TG-ATATAT---CAGTTTTC-A-CTATGGCG---------------ATGCATGTTTAAATAAATAAACACTACTATGAATACATACAAGTCGATATGTAGGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACGGATCAGCAAC--GCTTATCGTTAC
droYak3 2L:14467843-14468139 + AAATCATGCAC---CA-GC----------------------------------------------------A-TTT--TCATCAATGGTTTTAAACCATATT--CCTGAA----TTGATTACAAAAA--------------------------------------------------------------------------------------------------------------------------------------------TA--ATTGAATATTCCTTCCATTGCTTTAAACATAAA--CATAA--------------------ACCTAGACTAGA-TG-ATATTT---GATTTTTT-T-CTATCGCG-AGT-------------ACATGTTTTAATAAATAAACACTATTATGAATACATACAAGTCGATATGTATA-ACACCACGA---TTCCAA--TATTAACGCTGAATATCTT--------------------------------------------------------TACA-----------------------G---------------------------------TTT--------------------------------------------------------------------------------------------------------------------------AGAATCCAAG--CCGAAAC------------------------CACTAGGTGCA-----AAACAAGACGGATTTGCAAT--GCAAGTCGTTAA
droEug1 scf7180000409452:930780-931194 + AAGTA--ACTCTAACA-TCA--------------------------------------------------CCATCAATTTTTCTTTGGTTGCAAACCACATT--AAGTTTTGTTT----TGCAAGGATTTGTAACAAATCCTAGA-TGTATT-AAGA----A--------------------------------------------------------------------------------TGTTA-------------ATAG--CTGATACTAATTACAAAATACA-------------------TTATA--ATA-----AGA-------------------TTGTTGCCT---GAA-CTCAAAAATGCCGAA-ACTATTCGTATTCCATTTATATTTTAATAAATAATCAC--TTATAAATAAATACATACATACATGTATGAAAAACACGA---TCACTA--TATAAGCGCCAAAACGTTT--------------------------------------------------------TTGAATAAA-----------AGTTATAA---------------------------GTTTATGAAGAAGGAAATCAAATGTACCTTTTAGCATTGGAGTTAA----GTTGGAATTTTAGTTTAAATAAGATTT--------------------------TTTTTAAATGAAAGT---------------------------------------------------------TTTAAAAGTA-----ATAAAAAATGAGTCTCTATC--GTTAGACTTAAA
droBia1 scf7180000302408:2199698-2200054 - TAATT--TCAATTTTGGA-T---------------------------------------------------CTTTATTTTTTCTTTGGTTACAAACCACATT--GTTGTT----CCATTTGCAAGTC-------------------T-TATC-AAGG----A------------------------------------------------------------------------TTTATAAACAATTACTTGTAAAAGAGACTTTATTA--ATTTAATATTTCTTCCATCTTAC----CATGAA--AATGTAATATA-----TAAGTGATTAACTAAAAAAAA-GG-ATATGG---TT-----GTACTTGCAGAAAAAAAACCTCTTACCACATATATTTTAATAAATAATCGCCATTATAAGTACATACATTCGCATATGTATATAAACCATGATCGGATCGG--TTTTTAATGTTAATA------------------------------------------------------------------------------------ATAT---------TTG------------------TATTAT--------------------------------------------------------------------------------------------------------------------------GGGGTTATGC-GT-----------------------------------------------TGAAGAATGAATCATCGTCCAGCGAGACATTAA
droTak1 scf7180000415399:899906-900277 - AATTT--CCCT---CT-AAT----------------------------------------------------------GTTTTTTTGGTTGAAAACCAGCAT--CTTTTT----A----TATAAGAT-------------------TTCTTC-AAAA----A------------------------------------------------------------------------TTTATGAATATCC-------------ATTTTGTTA--ACTAAATATTTCTTCCATCGTATTAAACATAAA--AATGTTATATA-----TAAG--ATTTACTCAAGGAGAACC-ATGTCC---GATATTTAAATTTGCTGAA-CACATTATCATACCACTTACATTTTAATAAATTATCACTATTATAAATACATACATTTCCATATGTATAAAAACCACCA---TCACAA--TAATAATGCCGAATTGTTT--------------------------------------------------------TCTAATAAA-----------ATGATTAT---------TTT------------------TATGAT---------------------------------------------------------------AGGCT--------------------------ATTTT--------G------------------TTTATC-GCT--G------------------ATTG---------GGCGTA-----TTGAAAGATGAATCATCGTCTGGCGAGACGATAA
droEle1 scf7180000491046:790408-790799 + AAATT--AATT---TGAA-A---------------------------------------------------A-TGT--ATGTTTCTGGTTGCAAACCATAGT--TTTGCG----TTGCCAAACAGGC-------------------TATCTATGAAGTTA-----------------------------------------------------------------------------------------------------GTTGGTTA--ATTAAGTATTTCTTCCATTGTAA----TGTTAACATTTATA--ATA-----AGAGCGATCAACTCAAGGAGC-TG-GTGGCT---GAATTTGAAACTTGAAGAA-AATACTCCCATACCATTTATATTTTAATAAATAAACGCCATTACATATACATAAATTTCTATATGTATAAAAATCGTGA---TTATAATTTATTGAGGCCGAAATGTTA--------------------------------------------------------TATTAAATACATTTTTTTTAAGGATTATTTTCATGGA-----------------------------------------------------------------------------------------TCGGTT--------------------------TGTTTCCTTAAAAGTTTTCCACC----------------------AC------------------------CTAGAGGTGTAACAA-TTGTTAGATGAATCATCAGC--GCTAGACGTTAA
droRho1 scf7180000780161:73382-73842 + AACTT--GA--------A-C---------------------------------------------------A-TTA--ATTTTCCTGGTTGCAAACCATATT--CTTGCT----CTGCCAAACAAAA------------CA--GGCTATTGCTGCAGTTA-----------------------------------------------------------------------------------------------------TTTGGTTAATATTAAATATATCTTCCATCGT--TAAGTA--AACATTTATA--ATA-----AGAGCAATCAACTCTAGGAGC-TG-ATGATT---GAATTTTTAACTTGAGGCA-AATATTCTAATATCATTTACACTTTAATAAATAAACGGCATTACAAATAAATACATAGACATATGTATAGAAATCCCGA---TCACAA--TATTAACTCCAAATTATTAGGGGCGGCAGCAAGTTGTTAATATCTGAGATGAATTTCAGTTTTTCAACGCATGTTTTTTAAATATATATTTTTTAAAGTATCTTTTTATGGC-----------------------------------------------------------------------------------------TTATTGTATTATTTCATATGAATTGGAAGGTTCGTT-------------TCCACC----------------------AC------------------------CAAGAGGTAAAACAT-TTGTAAGATGAATCAGCAGC--GCTAGACGTTAA
droFic1 scf7180000453843:429536-430028 - CATTT--TCTT---AA-ATTTTTTTTTTAACAAAATAATATTCTTAACATACCTATAGTTAAAAAATCTTTCAATCATTTTTCAGTGGTTGTAAACCACAGG--GA---G----TACATCAGCCTAC-------------------CACATC-GAAGTTATA------------------------------------------------------------------------------------------------------TGTTA--GTTAAGTTTTTTTTCTATGGGATTAAACGTAAA--CATATTTAAAAAAAAAAAAGCAAAAAACTCAAGGAGT-T------TTTTTTAATTTTGAATATACAGAA-TGC-TTACCGTGACATTAAAACTGAA-------AAAAACATTATGAATTCATACATATTTGTATGTAAAAAAATTAAGA---TTACAG--CATCAAGACTTAAACGGTT--------------------------------------------------------TTTAATTTA-----------AATAAAAT---------ATTTTCTCCAAAGATTGGGTTTATCAGAAATTAAACCATACATACTTGTTAATATTGGAGTGCTAAAAAATGTAT-----------------------------------------------------------GTTCTGTACC----------------------ACGTTGCTTTACTTTCGAATCAGGGT-TAACCA-----CCTTTGCTAAGATGAATCAGCCGA--GCTAGACGTTAA
droKik1 scf7180000302473:743047-743340 + AAATT--CTAT---TA-TCA-------------------------------------------------------------CCTATGG-------------ATTTTC--------CATTTAAAAGCA-------------------A-AAGC-AGGG----AGTTTTGTAAAATGTGTTACTACCTTAAATATATACCTCATACAGGGCTGAGCTTAAAATATATGTTCCACAT---------------------------GTGGCTTT--TTTAAATATTCTTTAAAATTTA--------------------------------------------------------------------------------------------------------------------ATTTTAATTTTTTGTCTACACATA------------AAA-----------------------------------------------------------------------------------------------------ATATTGGTTTTATGTTCGATTTCTAGGCA-----------------------------------------------------------------------------------------ACGCTT--------------------------TTCCTAAATAATAATATTAAAAAAACAGGGGATCTTGTGAACAAA------------------AATATATT---------TA-----ATAAAAAGCAAGTAC--------TAATGTTCTAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAGTT--GCAT---CA-GCT-----------------------------------------------------C-T--TCATTCATGGTTACAAACCATATT--TCTGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------TGTTT--TTTTAATATTTCTTCCATTGTATTAAACAAATA--ATTATAATATA-----GGAGAAACCAACTAAACTAGA-TG-ATATAT---GTTTTTTTTA-CTAATGCG-CGTATTCTTACACCATTCATGTTTTAATAAAAAGACAC--TTGCGAATACATACAAGTTGATATGTAAA-ACACCAACA---TACCAA--TATTAAAGCTGAATGGTTT--------------------------------------------------------ATTTGTATA-----------ATCAATAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------ATTGGATT---------CA-----AAGCAAGACGGATTA--------CCAGACGTTAASizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------CA-----AAGCAAGACGGATTA--------CCAGACGT...2713.00300000000003000000
................................................................................................................................................................................................................................................................................................................................................................................................TACACCATTCATGTTTTAATAAAAAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................2712.00200000020000000000
...................................................................................................................................................................................................................................................................................................................TTATAATATA-----GGAGAAACCAACTAAACTAGA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3111.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGA------------------ATTGGATT---------CA-----AAGCAAGACGGA......................2511.00100000000001000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------CA-----AAGCAAGACGGATTA--------CCAGA......2411.00100000000100000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------AT........................................................2811.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATT---------CA-----AAGCAAGACGGATTA--------CCA........2711.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------ATTTGTATA-----------ATCAATAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATT.......................................................................................2711.00100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA-----------ATCAATAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------..........................................................2911.00100000010000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT---------CA-----AAGCAAGACGGATT....................1811.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGA------------------ATTGGATT---------CA-----AAGCAAGACGGAT.....................2811.00100000000000001000
...........................................................................................................................................................................................................................................................................................................................................AACTAAACTAGA-TG-ATATAT---GT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000001000000
..........................................................................................................TGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------ATTGGAA...................................................2611.00100000000000010000
........................................................................................................................................................................................................................................................................................................................ATATA-----GGAGAAACCAACTAAACTAGA-............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------CA-----AAGCAAGACGGATTA--------CCAGACGT...2611.00100000000001000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGA------------------ATTGGATT---------CA-----AAGCAAGACGGA......................2711.00100000000000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGATT---------CA-----AAGCAAGACGGATTA--------CC.........2611.00100000000000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGCGAATACATACAAGTTGATATG...........................................................................................................................................................................................................................................................................................................................................................................................2411.00100001000000000000
............................................................................................................................................................................................................................................................................................................................................................TATAT---GTTTTTTTTA-CTAATGCG-CGTA........................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000000000
......................................................................................................................................................................................................................................................................................ATTTCTTCCATTGTATTA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
droSec2
AAGTT--GCAT---CA-GCT-----------------------------------------------------C-T--TCATCCATGGTTACAAACCATATT--TCTGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------TGTTG--TTTAAATATTTCTTCCATTGTATTAAACATAAA--ATTATAATATA-----GGAGAAATCAACTAAACTAGA-TG-ATATAT---GATTTTTT-T-CTAATGCG-CGTATTCTTACACCATTCATGTTTTAATAAA---------TTGCGAATACATACAATTTGATATGTAAA-ACACCAACA---TACCAA--TATTAAAGCTGAATGGTTT--------------------------------------------------------ATTTGTATA-----------ATCAATAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------ATTGGATT---------CA-----AAGCAAGACGGATTA--------CCAGACGTTAASizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAATTTGATATGTAAA-ACACCAACA---..........................................................................................................................................................................................................................................................................................................................................................................2711.0011000
....................................................................................................TT--TCTGAT----TTGATTACAAGGC-------------------TACATC-...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0011000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----AAGCAAGACGGATTA--------CCAGACGT...2511.0011000
...........................................................................................................GAT----TTGATTACAAGGC-------------------TACATC-GAA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100
..............................................................................................................................................................................................................................................................................................................................................................TAT---GATTTTTT-T-CTAATGCG-CGTATTCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
................................................................................................................................................................................................................................................................................................................................................................................TAATGCG-CGTATTCTTACACCATTCATG.......................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
.........................................................................................................................................................................................................................................................................................................................TATA-----GGAGAAATCAACTAAACTAGA-TG-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT---------------------------------TAT--------------------------------------------------------------------------------------------------------------------------AGAATTTAAC-ATCGGA------------------ATTGG.....................................................2711.0011000
............................................................................................................................................................................................................................................................................................................................A-----GGAGAAATCAACTAAACTAGA-TG-A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-ATCGGA------------------ATTGGATT---------CA-----AAGCAAGA..........................2711.0011000
dm3
T------------------------------------------------------------------------------CATCCATGGTTACAAACCATATTCTCCTGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------TGTTG--TTTAAATATTTCTTCCATTGTATTAAACATATA--ATTATAATATA-----GGAGAAATCAACTAAACTAGA-TG-ATATAT---GATTTTTT-A-CTAATGCG-AGTGTTCATACACCATTCATGATTTAATAAAAATGCACACTTGCGAATACATACAAGTTGATATGTAAA-ACACCAACA---TACTAA--TATTAAATCTGAATGTTTT--------------------------------------------------------ATTTGTATA-----------TTCAATAT---------TT-----------------------CT--------------------------------------------------------------------------------------------------------------------------AGAACTTTAA-ATCGGA------------------ATTGGAATCAAAGGGTG-----------------------TAAA--GCAAGACGTTAASizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
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..........................................................................................................TGAT----TTGATTACAAGGC-------------------TACATC-GAAA----A------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droEre2
ATGC-----AT---CA-GC----------------------------------------------------A-CTT--TCATCCATGGTTTGAAACCATATT--TCTGTT----TTGA-----------------------------------------------------------------------------------------------------------------------------------------------------TG--TTTAAATATTTCTTTCATTGCATTAGACATAAA--AATATA-TATA-----GA-----ATAACAAAACTAGA-TG-ATATAT---CAGTTTTC-A-CTATGGCG---------------ATGCATGTTTAAATAAATAAACACTACTATGAATACATACAAGTCGATATGTAGGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACGGATCAGCAAC--GCTTATCGTTACSizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TACAAGTCGATATGTAGGGA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGGACG........................2611.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................TTTAAATAAATAAACACTACTATGAATA...........................................................................................................................................................................................................................................................................................................................................................................................................2811.0011000000
.................GC----------------------------------------------------A-CTT--TCATCCATGGTTTGAAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
droYak3
AAATCATGCAC---CA-GC----------------------------------------------------A-TTT--TCATCAATGGTTTTAAACCATATT--CCTGAA----TTGATTACAAAAA--------------------------------------------------------------------------------------------------------------------------------------------TA--ATTGAATATTCCTTCCATTGCTTTAAACATAAA--CATAA--------------------ACCTAGACTAGA-TG-ATATTT---GATTTTTT-T-CTATCGCG-AGT-------------ACATGTTTTAATAAATAAACACTATTATGAATACATACAAGTCGATATGTATA-ACACCACGA---TTCCAA--TATTAACGCTGAATATCTT--------------------------------------------------------TACA-----------------------G---------------------------------TTT--------------------------------------------------------------------------------------------------------------------------AGAATCCAAG--CCGAAAC------------------------CACTAGGTGCA-----AAACAAGACGGATTTGCAAT--GCAAGTCGTTAASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--------------------------------------------------------TACA-----------------------G---------------------------------TTT--------------------------------------------------------------------------------------------------------------------------AGAATCCAAG--CCGAAAC------------------------..................................................2611.00101000000000
droEug1
AAGTA--ACTCTAACA-TCA--------------------------------------------------CCATCAATTTTTCTTTGGTTGCAAACCACATT--AAGTTTTGTTT----TGCAAGGATTTGTAACAAATCCTAGA-TGTATT-AAGA----A--------------------------------------------------------------------------------TGTTA-------------ATAG--CTGATACTAATTACAAAATACA-------------------TTATA--ATA-----AGA-------------------TTGTTGCCT---GAA-CTCAAAAATGCCGAA-ACTATTCGTATTCCATTTATATTTTAATAAATAATCAC--TTATAAATAAATACATACATACATGTATGAAAAACACGA---TCACTA--TATAAGCGCCAAAACGTTT--------------------------------------------------------TTGAATAAA-----------AGTTATAA---------------------------GTTTATGAAGAAGGAAATCAAATGTACCTTTTAGCATTGGAGTTAA----GTTGGAATTTTAGTTTAAATAAGATTT--------------------------TTTTTAAATGAAAGT---------------------------------------------------------TTTAAAAGTA-----ATAAAAAATGAGTCTCTATC--GTTAGACTTAAASizeHit CountTotal NormTotal
No Reads
droBia1
TAATT--TCAATTTTGGA-T---------------------------------------------------CTTTATTTTTTCTTTGGTTACAAACCACATT--GTTGTT----CCATTTGCAAGTC-------------------T-TATC-AAGG----A------------------------------------------------------------------------TTTATAAACAATTACTTGTAAAAGAGACTTTATTA--ATTTAATATTTCTTCCATCTTAC----CATGAA--AATGTAATATA-----TAAGTGATTAACTAAAAAAAA-GG-ATATGG---TT-----GTACTTGCAGAAAAAAAACCTCTTACCACATATATTTTAATAAATAATCGCCATTATAAGTACATACATTCGCATATGTATATAAACCATGATCGGATCGG--TTTTTAATGTTAATA------------------------------------------------------------------------------------ATAT---------TTG------------------TATTAT--------------------------------------------------------------------------------------------------------------------------GGGGTTATGC-GT-----------------------------------------------TGAAGAATGAATCATCGTCCAGCGAGACATTAASizeHit CountTotal NormTotal
No Reads
droTak1
AATTT--CCCT---CT-AAT----------------------------------------------------------GTTTTTTTGGTTGAAAACCAGCAT--CTTTTT----A----TATAAGAT-------------------TTCTTC-AAAA----A------------------------------------------------------------------------TTTATGAATATCC-------------ATTTTGTTA--ACTAAATATTTCTTCCATCGTATTAAACATAAA--AATGTTATATA-----TAAG--ATTTACTCAAGGAGAACC-ATGTCC---GATATTTAAATTTGCTGAA-CACATTATCATACCACTTACATTTTAATAAATTATCACTATTATAAATACATACATTTCCATATGTATAAAAACCACCA---TCACAA--TAATAATGCCGAATTGTTT--------------------------------------------------------TCTAATAAA-----------ATGATTAT---------TTT------------------TATGAT---------------------------------------------------------------AGGCT--------------------------ATTTT--------G------------------TTTATC-GCT--G------------------ATTG---------GGCGTA-----TTGAAAGATGAATCATCGTCTGGCGAGACGATAASizeHit CountTotal NormTotal
No Reads
droEle1
AAATT--AATT---TGAA-A---------------------------------------------------A-TGT--ATGTTTCTGGTTGCAAACCATAGT--TTTGCG----TTGCCAAACAGGC-------------------TATCTATGAAGTTA-----------------------------------------------------------------------------------------------------GTTGGTTA--ATTAAGTATTTCTTCCATTGTAA----TGTTAACATTTATA--ATA-----AGAGCGATCAACTCAAGGAGC-TG-GTGGCT---GAATTTGAAACTTGAAGAA-AATACTCCCATACCATTTATATTTTAATAAATAAACGCCATTACATATACATAAATTTCTATATGTATAAAAATCGTGA---TTATAATTTATTGAGGCCGAAATGTTA--------------------------------------------------------TATTAAATACATTTTTTTTAAGGATTATTTTCATGGA-----------------------------------------------------------------------------------------TCGGTT--------------------------TGTTTCCTTAAAAGTTTTCCACC----------------------AC------------------------CTAGAGGTGTAACAA-TTGTTAGATGAATCATCAGC--GCTAGACGTTAASizeHit CountTotal NormTotal
No Reads
droRho1
AACTT--GA--------A-C---------------------------------------------------A-TTA--ATTTTCCTGGTTGCAAACCATATT--CTTGCT----CTGCCAAACAAAA------------CA--GGCTATTGCTGCAGTTA-----------------------------------------------------------------------------------------------------TTTGGTTAATATTAAATATATCTTCCATCGT--TAAGTA--AACATTTATA--ATA-----AGAGCAATCAACTCTAGGAGC-TG-ATGATT---GAATTTTTAACTTGAGGCA-AATATTCTAATATCATTTACACTTTAATAAATAAACGGCATTACAAATAAATACATAGACATATGTATAGAAATCCCGA---TCACAA--TATTAACTCCAAATTATTAGGGGCGGCAGCAAGTTGTTAATATCTGAGATGAATTTCAGTTTTTCAACGCATGTTTTTTAAATATATATTTTTTAAAGTATCTTTTTATGGC-----------------------------------------------------------------------------------------TTATTGTATTATTTCATATGAATTGGAAGGTTCGTT-------------TCCACC----------------------AC------------------------CAAGAGGTAAAACAT-TTGTAAGATGAATCAGCAGC--GCTAGACGTTAASizeHit CountTotal NormTotal
No Reads
droFic1
CATTT--TCTT---AA-ATTTTTTTTTTAACAAAATAATATTCTTAACATACCTATAGTTAAAAAATCTTTCAATCATTTTTCAGTGGTTGTAAACCACAGG--GA---G----TACATCAGCCTAC-------------------CACATC-GAAGTTATA------------------------------------------------------------------------------------------------------TGTTA--GTTAAGTTTTTTTTCTATGGGATTAAACGTAAA--CATATTTAAAAAAAAAAAAGCAAAAAACTCAAGGAGT-T------TTTTTTAATTTTGAATATACAGAA-TGC-TTACCGTGACATTAAAACTGAA-------AAAAACATTATGAATTCATACATATTTGTATGTAAAAAAATTAAGA---TTACAG--CATCAAGACTTAAACGGTT--------------------------------------------------------TTTAATTTA-----------AATAAAAT---------ATTTTCTCCAAAGATTGGGTTTATCAGAAATTAAACCATACATACTTGTTAATATTGGAGTGCTAAAAAATGTAT-----------------------------------------------------------GTTCTGTACC----------------------ACGTTGCTTTACTTTCGAATCAGGGT-TAACCA-----CCTTTGCTAAGATGAATCAGCCGA--GCTAGACGTTAASizeHit CountTotal NormTotal
No Reads
droKik1
AAATT--CTAT---TA-TCA-------------------------------------------------------------CCTATGG-------------ATTTTC--------CATTTAAAAGCA-------------------A-AAGC-AGGG----AGTTTTGTAAAATGTGTTACTACCTTAAATATATACCTCATACAGGGCTGAGCTTAAAATATATGTTCCACAT---------------------------GTGGCTTT--TTTAAATATTCTTTAAAATTTA--------------------------------------------------------------------------------------------------------------------ATTTTAATTTTTTGTCTACACATA------------AAA-----------------------------------------------------------------------------------------------------ATATTGGTTTTATGTTCGATTTCTAGGCA-----------------------------------------------------------------------------------------ACGCTT--------------------------TTCCTAAATAATAATATTAAAAAAACAGGGGATCTTGTGAACAAA------------------AATATATT---------TA-----ATAAAAAGCAAGTAC--------TAATGTTCTAASizeHit CountTotal NormTotal
No Reads

Generated: 05/18/2015 at 05:18 PM