ID:

dsi_25415

 Coordinate:

3l:7210983-7211132 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-23.0 -22.9 -22.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGAATCTTAAAACGAAGAACATATTTTCGCATTTATTCTAATTTCACATGACTGGCTCGAATTTTTTCTTTGCAAAGTTGATTGTAAGGCAGTGAAATTGTAGTATCTAATGCTTGAAAGTATATTAAGCTTGAATATATAAGTACACAATTAACTCACGGCAAATTATATACATGTGTGTTCTTGATACTAACTTACAGCATTGATGATATTGAAGACAATTCGATCCTTCGCAGAGGTGTGCCCGTGG
**************************************************.........((((((..((((((((......))))))))....)))))).(((((((....((((((.......))))))..(((((((((.(((...((((..((...))..))))...))).)))))))))..)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR902009
testis
 GSM343915
embryo
...........................................................................................GTGAAATTGTAGTATCG.............................................................................................................................................. 17 1 1 3.00 3 1 1 0 1 0 0 0 0
............................................................................................TGAAATTGTAGTATC............................................................................................................................................... 15 0 1 3.00 3 1 2 0 0 0 0 0 0
.........................................................................................CGGTGAAATTGTAGTATC............................................................................................................................................... 18 1 1 3.00 3 2 0 1 0 0 0 0 0
.........................................................................................CGGTGAAATTGTAGTATCG.............................................................................................................................................. 19 2 2 1.50 3 0 2 1 0 0 0 0 0
..............................................................................................AAATTGTAGTATCTAATGCTT....................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0
.........................................................................................CGGTGAAATTGTAGTAT................................................................................................................................................ 17 1 2 1.00 2 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................TGATGATATTGAAGACAATTCGAT....................... 24 0 1 1.00 1 0 0 0 0 1 0 0 0
.........................................................................................CAGTGAAATTGTAGTAT................................................................................................................................................ 17 0 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................AGTGAAATTGTAGTATCG.............................................................................................................................................. 18 1 1 1.00 1 1 0 0 0 0 0 0 0
.........................................................................................CAGTGACATTGTAGTATC............................................................................................................................................... 18 1 1 1.00 1 1 0 0 0 0 0 0 0
..........................................................................................AGTGAAATTGTAGTATC............................................................................................................................................... 17 0 1 1.00 1 0 0 1 0 0 0 0 0
.........................................................................................CTGTGAAATTGTAGTAT................................................................................................................................................ 17 1 1 1.00 1 0 1 0 0 0 0 0 0
........................................................................................TCGGTGAAATTGTAGTATC............................................................................................................................................... 19 2 2 1.00 2 0 0 0 2 0 0 0 0
.........................................................................................CTGTGAAATTGTAGTATCG.............................................................................................................................................. 19 2 1 1.00 1 0 1 0 0 0 0 0 0
..........................................................................................GGTGAAATTGTAGTATC............................................................................................................................................... 17 1 3 0.67 2 1 1 0 0 0 0 0 0
............................................................................................TGAAATTGTAGTATCG.............................................................................................................................................. 16 1 3 0.67 2 2 0 0 0 0 0 0 0
...........................................................................................GTGAAATTGTAGTACC............................................................................................................................................... 16 1 4 0.50 2 2 0 0 0 0 0 0 0
.........................................................................................CGGTGAAATTGTAGTA................................................................................................................................................. 16 1 4 0.50 2 1 1 0 0 0 0 0 0
........................................................................................CCGGTGAAATTGTAGTATC............................................................................................................................................... 19 2 2 0.50 1 0 1 0 0 0 0 0 0
..........................................................................................AGTTAAATTGTAGTATC............................................................................................................................................... 17 1 2 0.50 1 1 0 0 0 0 0 0 0
...........................................................................................GTGAAATTGTAGTAT................................................................................................................................................ 15 0 2 0.50 1 1 0 0 0 0 0 0 0
.........................................................................................CGGTGAAATTGTAGT.................................................................................................................................................. 15 1 7 0.43 3 0 3 0 0 0 0 0 0
..........................................................................................TGTGAAATTGTAGTATCG.............................................................................................................................................. 18 2 3 0.33 1 0 1 0 0 0 0 0 0
.........................................................................................CGGTGAAATTATAGTATCT.............................................................................................................................................. 19 2 3 0.33 1 0 0 0 1 0 0 0 0
.........................................................................................CGGTGAAATTGTAGTATCGG............................................................................................................................................. 20 3 6 0.33 2 1 0 0 0 1 0 0 0
..............................................CATGACAGGCTGGAGTTTTT........................................................................................................................................................................................ 20 3 9 0.22 2 0 0 0 0 0 0 2 0
...........................................................................................TTGAAATTGTAGTATC............................................................................................................................................... 16 1 11 0.18 2 2 0 0 0 0 0 0 0
........................................................................................TCTGTGAAATTGTAGTATCG.............................................................................................................................................. 20 3 6 0.17 1 1 0 0 0 0 0 0 0
.........................................................................................CGGTGAAATTATAGTACCT.............................................................................................................................................. 19 3 10 0.10 1 0 1 0 0 0 0 0 0
...........................................................................................GTGAAATTGTAGTCT................................................................................................................................................ 15 1 11 0.09 1 0 0 0 1 0 0 0 0
............................................................ATTTTTTCTTTGCAACTTTGGT........................................................................................................................................................................ 22 3 13 0.08 1 0 0 0 0 0 0 0 1
..........................................................................................TGTGAAATTGTAGTATCGG............................................................................................................................................. 19 3 14 0.07 1 1 0 0 0 0 0 0 0
.........................................................................................CGGTGAAATTGTAGTAACG.............................................................................................................................................. 19 3 15 0.07 1 0 1 0 0 0 0 0 0
..............................................CATGAGTGGCTCGAACT........................................................................................................................................................................................... 17 2 17 0.06 1 0 0 1 0 0 0 0 0
..................................................................................................................................................................AAATTATATACCTGTGA....................................................................... 17 2 20 0.05 1 0 0 0 1 0 0 0 0
....................................................................................TAAGGTAGTGAAATT....................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 1 0 0 0

Anti-sense strand reads

ACTTAGAATTTTGCTTCTTGTATAAAAGCGTAAATAAGATTAAAGTGTACTGACCGAGCTTAAAAAAGAAACGTTTCAACTAACATTCCGTCACTTTAACATCATAGATTACGAACTTTCATATAATTCGAACTTATATATTCATGTGTTAATTGAGTGCCGTTTAATATATGTACACACAAGAACTATGATTGAATGTCGTAACTACTATAACTTCTGTTAAGCTAGGAAGCGTCTCCACACGGGCACC
**************************************************.........((((((..((((((((......))))))))....)))))).(((((((....((((((.......))))))..(((((((((.(((...((((..((...))..))))...))).)))))))))..)))))))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M053
female body
 O001
Testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
............................CGTAAATAAGATTAAAGT............................................................................................................................................................................................................ 18 0 1 1.00 1 0 0 1 0 0
........................................................................GTTTCAACTAACATTCCGTCA............................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
..............................................................................................................................................................................................TTTGAATGTCGTAACTACTATA...................................... 22 1 1 1.00 1 1 0 0 0 0
....ATAATTTTGCTTATTGTA.................................................................................................................................................................................................................................... 18 2 20 0.05 1 0 0 0 0 1
..........................................GAATGTACTGACCGAG................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0

Generated: 04/23/2015 at 09:09 PM