ID:

dsi_2540

 Coordinate:

x:8037424-8037706 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-55.4 -55.3 -55.2

Flybase annnotation

five_prime_UTR [x_8037324_8037477_-]; exon [x_8037245_8037477_-]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------########################################################################################################
AAAGTCAAGAAGCAACCGAGCAGATAATACAGCTCGGGAATTAAACAAAAGTATTGTTTTTTTGTTTGAAATTAATAAATTCAATTCGGCACGTGCGCAAAAGCGACAATAATCAAAATGTATAATAACCTTTATTGTATTTCAAACAGAAAGTGCAAATTTATTGTAACGCTTTTTGGAATCTATGTTTGAAAAAAATGCACTCTGTTTGCTCTCTAGAAATTCACGTTTATAGAATTCAAAAATAAAACTTTTGTACCGCCCATCTATGGTATATTGTGTCGCTTTTCTCACTGTGTGTCCATTGGCTTTCGGTTAATTGGCACTTGGAAGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTCCGATCTGGGATCGCCACTTG
**************************************************.(((((.((((......)))).)))))...........(((.(((...((((((((((...........(((((((((...)))))))))..((((((((..(((((...............(((((.((((....)))).)))))..)))))))))))))...((((.((((....)))).))))..................(((((((........)))))))...))))))))))..))))))(((((.(((((((...))))))).))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
...............................................................................................................................................................................................AAAAAAATGCACTCTGTTTG............................................................................................................................................................................ 20 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................................................................................GAAAATTTATTGTCACGCTTCTT.............................................................................................................................................................................................................. 23 3 1 1.00 1 0 1 0 0 0 0
................................................................................................................................................................................................................................CACGTTTATAGAACTCAAAAATAAAAC.................................................................................................................................... 27 1 1 1.00 1 0 0 1 0 0 0
.......................................................................................................................................................................AACGCTTTCTGGAACCTATCT................................................................................................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0 0
..........................................AAGCAAAAGTATTGTTTGTT................................................................................................................................................................................................................................................................................................................................. 20 2 3 0.33 1 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................................GAAGTTAGACGTTGCCTGG................................... 19 3 10 0.10 1 0 0 0 1 0 0
....................................................................................................................................................................................................................................TTTACAGAATTCAAAAA.......................................................................................................................................... 17 1 10 0.10 1 1 0 0 0 0 0
.............................................................................................................................................................................................................................................................TTGTACCGTCCATCT................................................................................................................... 15 1 11 0.09 1 0 0 0 0 1 0
..................................................GTTTTGTGTTTTTGTTTGAA......................................................................................................................................................................................................................................................................................................................... 20 2 13 0.08 1 0 0 0 0 0 1
...................................................................................................................................................................................................................................................................................GTTGTGTCGATTTTCTC........................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0
...........................TACAGCTCGGGAATTTC................................................................................................................................................................................................................................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

TTTCAGTTCTTCGTTGGCTCGTCTATTATGTCGAGCCCTTAATTTGTTTTCATAACAAAAAAACAAACTTTAATTATTTAAGTTAAGCCGTGCACGCGTTTTCGCTGTTATTAGTTTTACATATTATTGGAAATAACATAAAGTTTGTCTTTCACGTTTAAATAACATTGCGAAAAACCTTAGATACAAACTTTTTTTACGTGAGACAAACGAGAGATCTTTAAGTGCAAATATCTTAAGTTTTTATTTTGAAAACATGGCGGGTAGATACCATATAACACAGCGAAAAGAGTGACACACAGGTAACCGAAAGCCAATTAACCGTGAACCTTCAACCTTCAACGGGCCGACCAAAGACGAAAGGCTAGACCCTAGCGGTGAAC
**************************************************.(((((.((((......)))).)))))...........(((.(((...((((((((((...........(((((((((...)))))))))..((((((((..(((((...............(((((.((((....)))).)))))..)))))))))))))...((((.((((....)))).))))..................(((((((........)))))))...))))))))))..))))))(((((.(((((((...))))))).))))).......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body
........................................................................................CGTGTACGTGTTTTTGCTGTTAT................................................................................................................................................................................................................................................................................ 23 3 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................AGCCGTGCACGCGTTTTCGCTGTTT................................................................................................................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................................................................................................................................................AGACTAGACCCCAGCG...... 16 2 20 0.90 18 17 0 1 0 0 0 0
..............................................................................................................................................................................................................................................AGGTTTTATTTTGAA.................................................................................................................................. 15 1 20 0.65 13 10 0 3 0 0 0 0
..............................................................................................................................................................................................................................................AGGTTTTATTTTGAAA................................................................................................................................. 16 1 20 0.45 9 6 0 3 0 0 0 0
.............................................................................................................................................................................................................................................AAGGTTTTATTTTGAA.................................................................................................................................. 16 1 20 0.30 6 4 0 2 0 0 0 0
.............................................................................................ACGTGTTTTTGCTGTTATTAAT............................................................................................................................................................................................................................................................................ 22 3 7 0.29 2 0 2 0 0 0 0 0
..............................................................................................................................................................................................................................................AGGTTTTATTTTGAAAA................................................................................................................................ 17 1 14 0.21 3 3 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................TTGGGAAACATGGCTGGTA..................................................................................................................... 19 3 14 0.21 3 1 0 0 0 2 0 0
................GGTCGTCTATTATGTCCA............................................................................................................................................................................................................................................................................................................................................................. 18 2 5 0.20 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................................................................AAGGTTTTATTTTGAAAA................................................................................................................................ 18 1 5 0.20 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................................AAGGTTTTATTTTGA................................................................................................................................... 15 1 20 0.15 3 2 0 1 0 0 0 0
.............................................................................................................................................................................................................................................AAGGTTTTATTTTGAAA................................................................................................................................. 17 1 12 0.08 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................AGAGAAAGGGGAGATCTTTA................................................................................................................................................................ 20 3 15 0.07 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................................................................................................................................................................AGGGCTGACCTAAGACGAA...................... 19 3 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................................AAGATTTTATTTTGAA.................................................................................................................................. 16 1 20 0.05 1 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:8037374-8037756 - dsi_2540 A-AAGTCAAGAAGCAA----------CCG--AGCAGATAATACAG------CTCGGG-------A------ATTAAAC---AAAAGT----AT-TGTTT---------------TTTTGTTTGAAATTAATAAAT--TC-----AATTCGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACAATAAT--------------------------------------------------------------------------------CAAAATGTATA----------ATAACCTTTAT-----------TGTATTTCAAACAGAAAGTGCAAATTTATTGTAACGCTTTTTGGAA-------------------TCTATGT-TTG----AA--------------------------------------------------------------AA-----------------------------AAATGC---------------------------------------ACTCTGTTTGCTCTCTAGAAATTCACGTT----------------------------------------TATAGAATTCAA-AAATAAA----------------------------------------------------------------------ACTTTTGTACCGCCCAT--CTAT------GGTATATTG------------------TGT--------CGCTTTTCTCACTGTGTGTCC-----------ATTGGCTTTCGGT------TAATTGGCACTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCGCCACTTG--------
droSec2 scaffold_35:315078-315469 - A-AAGTCAAGAAGCAT----------CCG--AGCTGATAATACAG------CTCGGG-------A------ATTAAAC---AAAAGC----GTATTTT-----------------TTCGTTTGAAATTAATAAAT--TC-----AATTCGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACAATAAT--------------------------------------------------------------------------------CAAAATGTATAATGTACGCGAATAACCTTTAT-----------TGTATTTCAAACAGAAAGTGCAAATATATTGTAACGCTTTTAGGAA-------------------TCTATGT-TTG----AA--------------------------------------------------------------AA-----------------------------AAATGC---------------------------------------ACTCTGTTTGCTCTCTACACATTCACGTT----------------------------------------TATAGAATTCAA-AAATAAA----------------------------------------------------------------------ACTTTTGTACTGCCCAT--CTAT------GGTATATTG------------------TGT--------CGCTTTTTTCACTGTGTGTCC-----------GTTGGCTTTCGGT------TAATTGGCACTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCGCCACTTG--------
dm3 chrX:8466990-8467382 - A-AAGTCAAGAAGCGA----------CCG--AGCAGATAATACAG------CTCGGG-------A------ATTAAAC---AAATGC----GTATTTT----------------TTTTGTTTGAAATCAATAAAT--CC-----AAGTTGG---------------------------CA----C--------------------------------------------GACAATAAT--------------------------------------------------------------------------------CAAAATGTATAATGAACGCGAATAACCTTTAT-----------TGTATTTCAAACAGAAAGTACAAATTTATTTTAATGCTTTTAGGAA-------------------TCTATAT-GTGCAAAAA--------------------------------------------------------------AA-----------------------------AAATGC---------------------------------------ACTATGTTTGCTCT--ACACTTTCAAGTT----------------------------------------TATAGAATTCAAAAAATAAA-------------------------------------------------------------------TGCACTTTTGTACTCCCCAT--CTATATTGTATGTATATTG------------------TGT--------CGCTTTTCTCACTGTGTGTCC-----------GTTGGCTTTCGGT------TAATTGGCACTTGG-ATGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCGCCACTTG--------
droEre2 scaffold_4690:6645196-6645578 + A-GTGTCATGAAGCAT----------CTG--AACAGATAATACGG------CTCGGG-------A------ATTGAAC---AACAGC----GTTTGTTTT---------------------TAAAATTAATAAGT--CG-----AATGTGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACACTATT--------------------------------------------------------------------------------AAAAAAGTATA-TGTGCTCGAATCACCATTGTTTTTTTTATTTTTTATTTCAAACAAAAAGTTCAATTGAATTGCAAAGCAGGTAAGAA-------------------TCCATGT-TTA----TA--------------------------------------------------------------AG-----------------------------GAATGT---------------------------------------ACTATTAATGCTCC--AAGTTTTTGTGTT----------------------------------------TCTAGAA------AAATA---------------------------------------------------------------------------TATGTATTTCTGAT--CTAT------GGCATATTG------------------AGT--------CGG--TTTTCTCAGTGTGTCC-----------GTTGGCTTTCGTTTCAATTTAATTGGCACTT--------GGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCTCCAATCG--------
droYak3 X:12844790-12845164 + A-GTGTCATGAAGCAT----------CCG--AACAGATAATACGT------CTCGGA-------A------ATTGAAC---AAAAGC----GTTTGTTTT---------------------TCAAATAAGTAATC--CG-----AATGTGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACACTAAT--------------------------------------------------------------------------------CAAAAAGTATA----------------TTTCA-----------TAAATTGCAAACAGAAAGTACAAATTAATTGTAATGCACTTAAGCA-------------------TCCATGT-TTA----TA--------------------------------------------------------------AG-----------------------------CAATGC---------------------------------------ACTGTGAATGCTCT--ACATTTTTACATT----------------------------------------TCTAGAA------AAGTA---------------------------------------------------------------------------TATGTATTTCTGATCTCTAT------GGAAGTCGG------------------AGT--------CGG--TTTTCTCAGTGTGTCC-----------ATTGGCTTTCGGT------TAATTGGCACTTGA-AAGTTGGAAGTTGTCCGGCTGGTTTCTGCTCTCTGCCTGGTCTCTGTCAGATC----TG-----------GGATCGCCGATCG--------
droEug1 scf7180000408744:85492-85936 - A-ATGTCAAGACCCAT----------CTG--GACAGATAATACAG------CTTGGG-------A------TTTAAAC---AAAAGCCATCGTTTGTTTTTT-----TTTATTATTATTTTTT---------AATTTCGGATGT-----GTC-------------------CAGAGTAAGAGCGCGTG--TC-TGATCTCAA---------ATTTGCAAATAATAATTTAGCACTGATCG--------------------------------------------------------AAAATGTCACACCT------------------------------------------------------------------------------------------------------------------------------------------------TATAA-TTGAAAATATTAAACCGTATCGCAGTAATTACT---ATAT------------------------------------AAATG--------TGCCTTGTATTAAATCACTACCAGTGAACA-----------GC------------------TTCTACTACAATTACGTTGAGTTCAATTCCCTTAAAAGTTTATTTA-TTTAACAAATAAA-------------------------------------------------------------------TGTTATTTT-AACAACTAAT--CGATTTTGGAATTAT-TTA------------------AAT--------AGG--TTCTCTCAGTGTGTC------------GTTGGCTTTCGGC------TAATTGGCACTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CCATC----TG-----------GGATCGCCAATCG--------
droBia1 scf7180000302069:959993-960088 + --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTCAGTGTGCCG-----------CCTCGCTTGCGAC------TAATTGCCTCTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTCTC---------------AGGTC----TG-----------GGAGCGCCAATCG--------
droTak1 scf7180000414549:186515-186616 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTCAGTGTCTCT------------CTGGCTTTCGAC------TAATTGCCTCTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTCTC---------------CGATC----TG-----------CGATCGCCAATCCAATACAA-
droEle1 scf7180000491006:1916350-1916438 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCAGTGTGTCT-----------GTTGGCTGTTGGC------TAATTGACACTT--------GGAAGTTGCCCGGCTGGTTTCTGCTCAG---------------CGATC----TG-----------CGATCTGGGATCG--------
droRho1 scf7180000779514:121180-121445 + A-GTGTCAAGACCCATCTCATCTCATCTG--GACAGATAATACTG------CTCCGG-------A------ATTGAAC---AAAAGCCAGCGATTGTTTATATTGT------------TATTA---------AATTTTCGAGGG-----GCA-------------------CAGAGAAAGAGCGCGTG--CCCCGTACAGAAACAAACACAATTTCAAACTGATAATCCAACACTGAAA--------------------------------------------------------------------------AATTATTAAATGGACA----------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAATGTTTTTCAT---TTTAAGC----TAATGC---------------------------------------CTGCTTTTTAATATTTAAAAATACATATT----------------------------------------TATACATTTAAG-TTTTAAA----------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000451789:267282-267744 - A-GTGTCAAGAACCAA----------ATG--GACAGATAATACAG------ACCGGG-------A-------TTGCAC---AAGAGCAAGCGATTGTTTTTATTAT------------TGTTA---------AATTTTGGAGGG-----GCA-------------------GAAAGAAGAAGCGCGTG--CC-TGTACACAAACAAATACGATTTTAAATTGATAATCCGACACTGATATAAAAATAAGTGTTTAATCTTTTAAAATTACTTTTTTAATATCCAATAACAATTTTAT----TTAATTCATAATAAA-A----------------------------------------------------------------------------------------------------------------------------------------TATAACTTGGAA-------------------------------------TT---------------TTTTATTTTAT---------------------------------------------------------------------------------TGC------------------------------------------------------ATCTTTTACACGATCTGTCAAGATTGTTAAAAATGAAAACCAAACCATTTAGAAGAATTCCAAAATTGT-------------------------------AATATATAGTTTCATAAAAAATCGCCTAATAATGAATACAA--TTTTCTCAGTGTTTCT-----------GTCTGCTCTTGGC------TAATTGGCACTTGG-CTGTTGGAAGTTGCCTGTCTGGTTTCTGCTCTC---------------GGATC----TG-----------GGATCGCTAATCG--------
droKik1 scf7180000302344:1705961-1706369 - G-GTGTCAAGACGCAT----------TTGCTGGGAGATAATACATCGTCGGCTCAGG-------G------AAT-AAC---AAAAGCCATCGATTGCTTCTATTATAATT-CG-------------------TATTTTTGAGAG-----ACCAGTTTTTGAAAGGTTTTTTAAGAAAAAAAATACATATATTCTATTAAG------------------------------------------------------------------TTACTTT--------ACAAAAATAATTTTAAAAAAGTAACACATAAAAAATA----------------------------------------------------------------------------------------------------------------------------------------TATAA-TTGGAAAT------CTGTA---GAGTAATTGTTCAAATATTAA--AAATTAAT------------CTTAGACTTCGGAAAGCCTTTGTATGCCTTA-----A----------------AGCTTACTTTT------CTCAACA--CA---------------------------CAATTCCCT---------------------------------------------------------------------------------------------------------------------------------------T------------------AAT--------TAA--ATCTCTCAGTGTGACTGG---------CTTGGCTTTTGGT------TAATTGGCACTTGGGAAGTTGGAAGTTGCCCGGCTGGTTTCTGCGATC---------------TGTGATCTCGC-----------GCATCGCCGATTG--------
droAna3 scaffold_13334:933354-933735 - GAGTGTCAAGAACCAT----------CTG--GAGAGATAATACGG---CAGACCAGGGGCAGGGACTTCAAATTCGACACCAAAAATTTATATTTGTTTTGA-----ATATTTTTTTTTTTTTAAATTAA---------GAGGGAAGGCGG---------------------------GTTGCGCGTG--TA-TGCACCGTGAAAAATT-----------------------------------------------------------------------------------------------------------------------------------TAAT-----T-----------AAAGTTTTACTCAAAAAGTTCCAAGTA-------------------CTTCTTTCCAA------------------------TTAGTTAGATATTTTAGTTTGGCT-------------------------------------TT---------------TT---TTTTAA---------------------------------------------------------------------------------CGA------------------------------------------------------ATCTTTTT---------------------------------------------------------TTGT-------------------------------AATAT-TT-TTTCAGACCTTATCGGATCAT--------CATATTGTTCTACGTGTGACTGA----CGATTGTTTACATTTGGT------TGATTGGCACT-------TTGGAAGTTGCCAGGCGGGTTTACGAGATA---------------CGATC----GCATATGT-TTGAAGCCCTCCACTTG--------
droBip1 scf7180000396733:577449-577852 - A-GTGTCAAGAATCAT----------CTG--GAGAGATAATACGG---CAGACCAGGGGCAGGGACTTCGAATTCGACACCAAAAA---TTATTTGTTTTTA-----ATT-TGTTTTTTTTTTAAATCAA---------GAGGGAAGGCGG---------------------------GTTGCGCGTG--TC-TGCACAGTAAAAAA------------------------------------------------------------------------------------------------------------------------------------TTAATCTGTTT-----------TGTTTATCAA---------------------------TTTTAAGAACTTATATTCAAAGAATGCTTCTATTTTTTG----AAAAGTTTGATCTTT-------------------------------------------------------------TTG--------------------------------------------------------------------GTGCTTTCTTAAAGTAAACATTTTCGA------------------------------------------------------ATCTTTTT---------------------------------------------------------TCGTACATTTTTGTAGACCTTAT--C--------------------------------AGATTAT--------CGTATTGTTCTCTGTGTGACTGACTGACGATTGTTTACTTTCGGT------TGATTGGCACT-------TTGGAAGTTGCCAGGCGGGTTTCTGTGATA---------------CGATC----GCATATGAATTGAAGCCCTCCAGTTA--------
dp5 XL_group1e:10802603-10802658 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGTTGTCCGGCAGGTTTGCGGCTGC---------------CGACA---CTC-----------GAATAGATATCCG-ATCCGAT
droPer2 scaffold_14:247286-247334 - --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGTTGTCCGGCAGGTTTGCGGCTGC---------------CGTCA---CTC-----------GAATAGATATCCG--------
droGri2 scaffold_14853:6977968-6977996 + G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTTGAAGTTGCCTGGCTGGTTTCTG---------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
A-AAGTCAAGAAGCAA----------CCG--AGCAGATAATACAG------CTCGGG-------A------ATTAAAC---AAAAGT----AT-TGTTT---------------TTTTGTTTGAAATTAATAAAT--TC-----AATTCGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACAATAAT--------------------------------------------------------------------------------CAAAATGTATA----------ATAACCTTTAT-----------TGTATTTCAAACAGAAAGTGCAAATTTATTGTAACGCTTTTTGGAA-------------------TCTATGT-TTG----AA--------------------------------------------------------------AA-----------------------------AAATGC---------------------------------------ACTCTGTTTGCTCTCTAGAAATTCACGTT----------------------------------------TATAGAATTCAA-AAATAAA----------------------------------------------------------------------ACTTTTGTACCGCCCAT--CTAT------GGTATATTG------------------TGT--------CGCTTTTCTCACTGTGTGTCC-----------ATTGGCTTTCGGT------TAATTGGCACTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCGCCACTTG--------SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AA--------------------------------------------------------------AA-----------------------------AAATGC---------------------------------------ACTCTGTTTG.....................................................................................................................................................................................................................................................................................................................................................................................2012.00200000000000002000
........................................TACAG------CTCGGG-------A------ATTTC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................17200.05100000000001000000
droSec2
A-AAGTCAAGAAGCAT----------CCG--AGCTGATAATACAG------CTCGGG-------A------ATTAAAC---AAAAGC----GTATTTT-----------------TTCGTTTGAAATTAATAAAT--TC-----AATTCGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACAATAAT--------------------------------------------------------------------------------CAAAATGTATAATGTACGCGAATAACCTTTAT-----------TGTATTTCAAACAGAAAGTGCAAATATATTGTAACGCTTTTAGGAA-------------------TCTATGT-TTG----AA--------------------------------------------------------------AA-----------------------------AAATGC---------------------------------------ACTCTGTTTGCTCTCTACACATTCACGTT----------------------------------------TATAGAATTCAA-AAATAAA----------------------------------------------------------------------ACTTTTGTACTGCCCAT--CTAT------GGTATATTG------------------TGT--------CGCTTTTTTCACTGTGTGTCC-----------GTTGGCTTTCGGT------TAATTGGCACTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCGCCACTTG--------SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
A-AAGTCAAGAAGCGA----------CCG--AGCAGATAATACAG------CTCGGG-------A------ATTAAAC---AAATGC----GTATTTT----------------TTTTGTTTGAAATCAATAAAT--CC-----AAGTTGG---------------------------CA----C--------------------------------------------GACAATAAT--------------------------------------------------------------------------------CAAAATGTATAATGAACGCGAATAACCTTTAT-----------TGTATTTCAAACAGAAAGTACAAATTTATTTTAATGCTTTTAGGAA-------------------TCTATAT-GTGCAAAAA--------------------------------------------------------------AA-----------------------------AAATGC---------------------------------------ACTATGTTTGCTCT--ACACTTTCAAGTT----------------------------------------TATAGAATTCAAAAAATAAA-------------------------------------------------------------------TGCACTTTTGTACTCCCCAT--CTATATTGTATGTATATTG------------------TGT--------CGCTTTTCTCACTGTGTGTCC-----------GTTGGCTTTCGGT------TAATTGGCACTTGG-ATGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCGCCACTTG--------SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTC---------------CGATC----TG-----------GGATCGC..............2013.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTTTC---------------CGATC----TG-----------GGATC................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGG-ATGTTGGAAGTTGCCCGGC........................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................AGCAGATAATACAG------CTCGGG-------A------.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGCCCGGCTGGTTTCA................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGTGTGTCC-----------GTTGGCTTTC...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGG-ATGTTGGAAGTTGCCC...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACTTGG-ATGTTGGAAGTTGC.............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTGG-ATGTTGGAAGTTGC.............................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................AAAT--CC-----AAGTTGG---------------------------CA----C--------------------------------------------GACAATA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-----------------------------AAATGC---------------------------------------ACTATGTTTGCGGG--...............................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
A-GTGTCATGAAGCAT----------CTG--AACAGATAATACGG------CTCGGG-------A------ATTGAAC---AACAGC----GTTTGTTTT---------------------TAAAATTAATAAGT--CG-----AATGTGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACACTATT--------------------------------------------------------------------------------AAAAAAGTATA-TGTGCTCGAATCACCATTGTTTTTTTTATTTTTTATTTCAAACAAAAAGTTCAATTGAATTGCAAAGCAGGTAAGAA-------------------TCCATGT-TTA----TA--------------------------------------------------------------AG-----------------------------GAATGT---------------------------------------ACTATTAATGCTCC--AAGTTTTTGTGTT----------------------------------------TCTAGAA------AAATA---------------------------------------------------------------------------TATGTATTTCTGAT--CTAT------GGCATATTG------------------AGT--------CGG--TTTTCTCAGTGTGTCC-----------GTTGGCTTTCGTTTCAATTTAATTGGCACTT--------GGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CGATC----TG-----------GGATCTCCAATCG--------SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................GTATA-TGTGCTCGAATCACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
................................................................................................................................AATAAGT--CG-----AATGTGG---------------------------CA----CGTG--C.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGTGTGTCC-----------GTTGGCTTTCG..................................................................................................................2211.0010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGCACTT--------GGAAGTTGCCCGGCTGG.....................................................................2611.0011000000
droYak3
A-GTGTCATGAAGCAT----------CCG--AACAGATAATACGT------CTCGGA-------A------ATTGAAC---AAAAGC----GTTTGTTTT---------------------TCAAATAAGTAATC--CG-----AATGTGG---------------------------CA----CGTG--CGC------------------------------AAAAGCGACACTAAT--------------------------------------------------------------------------------CAAAAAGTATA----------------TTTCA-----------TAAATTGCAAACAGAAAGTACAAATTAATTGTAATGCACTTAAGCA-------------------TCCATGT-TTA----TA--------------------------------------------------------------AG-----------------------------CAATGC---------------------------------------ACTGTGAATGCTCT--ACATTTTTACATT----------------------------------------TCTAGAA------AAGTA---------------------------------------------------------------------------TATGTATTTCTGATCTCTAT------GGAAGTCGG------------------AGT--------CGG--TTTTCTCAGTGTGTCC-----------ATTGGCTTTCGGT------TAATTGGCACTTGA-AAGTTGGAAGTTGTCCGGCTGGTTTCTGCTCTCTGCCTGGTCTCTGTCAGATC----TG-----------GGATCGCCGATCG--------SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTCTCTGCCTGGTCTCTG.............................................2111.00101000000000
.....TCATGAAGCAT----------CCG--AACAGATAATACGT------C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGG------------------AGT--------CGG--TTTTCTCAGTGTGTC.........................................................................................................................................2611.00100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGGAAGTTGTCCGGCTGG.....................................................................2011.00101000000000
droEug1
A-ATGTCAAGACCCAT----------CTG--GACAGATAATACAG------CTTGGG-------A------TTTAAAC---AAAAGCCATCGTTTGTTTTTT-----TTTATTATTATTTTTT---------AATTTCGGATGT-----GTC-------------------CAGAGTAAGAGCGCGTG--TC-TGATCTCAA---------ATTTGCAAATAATAATTTAGCACTGATCG--------------------------------------------------------AAAATGTCACACCT------------------------------------------------------------------------------------------------------------------------------------------------TATAA-TTGAAAATATTAAACCGTATCGCAGTAATTACT---ATAT------------------------------------AAATG--------TGCCTTGTATTAAATCACTACCAGTGAACA-----------GC------------------TTCTACTACAATTACGTTGAGTTCAATTCCCTTAAAAGTTTATTTA-TTTAACAAATAAA-------------------------------------------------------------------TGTTATTTT-AACAACTAAT--CGATTTTGGAATTAT-TTA------------------AAT--------AGG--TTCTCTCAGTGTGTC------------GTTGGCTTTCGGC------TAATTGGCACTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTTTC---------------CCATC----TG-----------GGATCGCCAATCG--------SizeHit CountTotal NormTotal
No Reads
droBia1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTCAGTGTGCCG-----------CCTCGCTTGCGAC------TAATTGCCTCTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTCTC---------------AGGTC----TG-----------GGAGCGCCAATCG--------SizeHit CountTotal NormTotal
No Reads
droTak1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCTCTCAGTGTCTCT------------CTGGCTTTCGAC------TAATTGCCTCTTGG-AAGTTGGAAGTTGCCCGGCTGGTTTCTGCTCTC---------------CGATC----TG-----------CGATCGCCAATCCAATACAA-SizeHit CountTotal NormTotal
No Reads
droEle1
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTTTTCAGTGTGTCT-----------GTTGGCTGTTGGC------TAATTGACACTT--------GGAAGTTGCCCGGCTGGTTTCTGCTCAG---------------CGATC----TG-----------CGATCTGGGATCG--------SizeHit CountTotal NormTotal
No Reads
droRho1
A-GTGTCAAGACCCATCTCATCTCATCTG--GACAGATAATACTG------CTCCGG-------A------ATTGAAC---AAAAGCCAGCGATTGTTTATATTGT------------TATTA---------AATTTTCGAGGG-----GCA-------------------CAGAGAAAGAGCGCGTG--CCCCGTACAGAAACAAACACAATTTCAAACTGATAATCCAACACTGAAA--------------------------------------------------------------------------AATTATTAAATGGACA----------AAAA------------------------------------------------------------------------------------------------------------------------------------------------------------------AAATTAATGTTTTTCAT---TTTAAGC----TAATGC---------------------------------------CTGCTTTTTAATATTTAAAAATACATATT----------------------------------------TATACATTTAAG-TTTTAAA----------------------------------------------------------------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
A-GTGTCAAGAACCAA----------ATG--GACAGATAATACAG------ACCGGG-------A-------TTGCAC---AAGAGCAAGCGATTGTTTTTATTAT------------TGTTA---------AATTTTGGAGGG-----GCA-------------------GAAAGAAGAAGCGCGTG--CC-TGTACACAAACAAATACGATTTTAAATTGATAATCCGACACTGATATAAAAATAAGTGTTTAATCTTTTAAAATTACTTTTTTAATATCCAATAACAATTTTAT----TTAATTCATAATAAA-A----------------------------------------------------------------------------------------------------------------------------------------TATAACTTGGAA-------------------------------------TT---------------TTTTATTTTAT---------------------------------------------------------------------------------TGC------------------------------------------------------ATCTTTTACACGATCTGTCAAGATTGTTAAAAATGAAAACCAAACCATTTAGAAGAATTCCAAAATTGT-------------------------------AATATATAGTTTCATAAAAAATCGCCTAATAATGAATACAA--TTTTCTCAGTGTTTCT-----------GTCTGCTCTTGGC------TAATTGGCACTTGG-CTGTTGGAAGTTGCCTGTCTGGTTTCTGCTCTC---------------GGATC----TG-----------GGATCGCTAATCG--------SizeHit CountTotal NormTotal
No Reads
droKik1
G-GTGTCAAGACGCAT----------TTGCTGGGAGATAATACATCGTCGGCTCAGG-------G------AAT-AAC---AAAAGCCATCGATTGCTTCTATTATAATT-CG-------------------TATTTTTGAGAG-----ACCAGTTTTTGAAAGGTTTTTTAAGAAAAAAAATACATATATTCTATTAAG------------------------------------------------------------------TTACTTT--------ACAAAAATAATTTTAAAAAAGTAACACATAAAAAATA----------------------------------------------------------------------------------------------------------------------------------------TATAA-TTGGAAAT------CTGTA---GAGTAATTGTTCAAATATTAA--AAATTAAT------------CTTAGACTTCGGAAAGCCTTTGTATGCCTTA-----A----------------AGCTTACTTTT------CTCAACA--CA---------------------------CAATTCCCT---------------------------------------------------------------------------------------------------------------------------------------T------------------AAT--------TAA--ATCTCTCAGTGTGACTGG---------CTTGGCTTTTGGT------TAATTGGCACTTGGGAAGTTGGAAGTTGCCCGGCTGGTTTCTGCGATC---------------TGTGATCTCGC-----------GCATCGCCGATTG--------SizeHit CountTotal NormTotal
No Reads
droAna3
GAGTGTCAAGAACCAT----------CTG--GAGAGATAATACGG---CAGACCAGGGGCAGGGACTTCAAATTCGACACCAAAAATTTATATTTGTTTTGA-----ATATTTTTTTTTTTTTAAATTAA---------GAGGGAAGGCGG---------------------------GTTGCGCGTG--TA-TGCACCGTGAAAAATT-----------------------------------------------------------------------------------------------------------------------------------TAAT-----T-----------AAAGTTTTACTCAAAAAGTTCCAAGTA-------------------CTTCTTTCCAA------------------------TTAGTTAGATATTTTAGTTTGGCT-------------------------------------TT---------------TT---TTTTAA---------------------------------------------------------------------------------CGA------------------------------------------------------ATCTTTTT---------------------------------------------------------TTGT-------------------------------AATAT-TT-TTTCAGACCTTATCGGATCAT--------CATATTGTTCTACGTGTGACTGA----CGATTGTTTACATTTGGT------TGATTGGCACT-------TTGGAAGTTGCCAGGCGGGTTTACGAGATA---------------CGATC----GCATATGT-TTGAAGCCCTCCACTTG--------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACTGA----CGATTGTTTACATTTGGT------T.........................................................................................................2711.001100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACT-------TTGGAAGTTGCCAGGCGG......................................................................2111.001000010
droBip1
A-GTGTCAAGAATCAT----------CTG--GAGAGATAATACGG---CAGACCAGGGGCAGGGACTTCGAATTCGACACCAAAAA---TTATTTGTTTTTA-----ATT-TGTTTTTTTTTTAAATCAA---------GAGGGAAGGCGG---------------------------GTTGCGCGTG--TC-TGCACAGTAAAAAA------------------------------------------------------------------------------------------------------------------------------------TTAATCTGTTT-----------TGTTTATCAA---------------------------TTTTAAGAACTTATATTCAAAGAATGCTTCTATTTTTTG----AAAAGTTTGATCTTT-------------------------------------------------------------TTG--------------------------------------------------------------------GTGCTTTCTTAAAGTAAACATTTTCGA------------------------------------------------------ATCTTTTT---------------------------------------------------------TCGTACATTTTTGTAGACCTTAT--C--------------------------------AGATTAT--------CGTATTGTTCTCTGTGTGACTGACTGACGATTGTTTACTTTCGGT------TGATTGGCACT-------TTGGAAGTTGCCAGGCGGGTTTCTGTGATA---------------CGATC----GCATATGAATTGAAGCCCTCCAGTTA--------SizeHit CountTotal NormTotal
No Reads
dp5
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGTTGTCCGGCAGGTTTGCGGCTGC---------------CGACA---CTC-----------GAATAGATATCCG-ATCCGATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGAAGTTGTCCGGCAGGTTTGCGGCTGC---------------CGTCA---CTC-----------GAATAGATATCCG--------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droGri2
G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTTTGAAGTTGCCTGGCTGGTTTCTG---------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:51 AM