ID:

dsi_25392

Coordinate:

2r:5649932-5650003 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [2r_5649874_5649931_+]; exon [2r_5649243_5649931_+]; CDS [2r_5650004_5650318_+]; exon [2r_5650004_5650318_+]; intron [2r_5649932_5650003_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------################################################## TGCGTCCCGGCTAATCTTCTTGGGCGCTCTGCTCGGCGCCTCCGTTTGCGGTGAGTGTACCCCCAGCGGTTCCATTAATCTGGATCAGGTGCGAAACTAACCTAAAATCTTCCCCGGTGCAGCCTCCCCCATTGAGTTCGTAATGGACACCAGTTTAAATGGCTCTCGATCT ************************************************...................((.(((......((((.((((.........))))...))))......))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	M024 male body	M053 female body	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries
............AATCTTCTTGGGCGCTCTGCTCGG........................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
.........................GCTCTGCTCGGCGCCTCCGT...............................................................................................................................	20	0	1	1.00	1	0	0	1	0	0
.........................GCTCTGCTCGGCGCCTCCGTTTG............................................................................................................................	23	0	1	1.00	1	1	0	0	0	0
..CGTCCCGGCTAATCTTCTTGGGCGC.................................................................................................................................................	25	0	1	1.00	1	1	0	0	0	0
............................................................................................................CTTCGGCGGTGCAGCCTC..............................................	18	2	3	0.33	1	1	0	0	0	0
......................................................................TCCATGAAACTGGATCAGG...................................................................................	19	2	3	0.33	1	0	0	0	1	0
.......................................................................CCATGAAACTGGATCAGG...................................................................................	18	2	9	0.33	3	0	0	0	3	0
..........................................................................TTAAACTGGATCAGG...................................................................................	15	1	9	0.11	1	0	0	0	1	0
......CCGGCAAATCTTCTTTGGCT..................................................................................................................................................	20	3	10	0.10	1	0	0	0	0	1
.......................................CTCCGTTAGTGGTGAGCG...................................................................................................................	18	3	20	0.05	1	0	0	0	1	0
...............................................................................................................CCCCGGTGGAACCTCC.............................................	16	2	20	0.05	1	1	0	0	0	0

Anti-sense strand reads

ACGCAGGGCCGATTAGAAGAACCCGCGAGACGAGCCGCGGAGGCAAACGCCACTCACATGGGGGTCGCCAAGGTAATTAGACCTAGTCCACGCTTTGATTGGATTTTAGAAGGGGCCACGTCGGAGGGGGTAACTCAAGCATTACCTGTGGTCAAATTTACCGAGAGCTAGA ************************************************...................((.(((......((((.((((.........))))...))))......))).))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553488 RT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553487 NRT_0-2 hours eggs
..............................................................................................CTGGTTGGATTTTAGAAG............................................................	18	2	4	0.25	1	1	0	0	0
..............................................................GGTCGCCAAGGAAAT...............................................................................................	15	1	11	0.09	1	0	1	0	0
........................................................................................................................................................CAAATTTATCGAGAG.....	15	1	19	0.05	1	0	0	1	0
.......................................................AGATGGGGGCCGCCA......................................................................................................	15	2	20	0.05	1	0	0	0	1

Generated: 04/23/2015 at 08:45 PM