dsi_2539

exon [2r_7082996_7083071_-]; CDS [2r_7082996_7083071_-]; CDS [2r_7082996_7083071_-]; CDS [2r_7082804_7082932_-]; exon [2r_7082720_7082932_-]; exon [2r_7082720_7082932_-]; CDS [2r_7082804_7082932_-]; exon [2r_7082996_7083071_-]; intron [2r_7082933_7082995_-]; intron [2r_7082933_7082995_-]

##################################################---------------------------------------------------------------################################################## TGCAGCTGACTGATCGCCTCAAGGTAGTGGCCACTCCCGCCAACTGGACCGTAAGTTTTTCTACCCACTTAATGCAAACTGTTCCGAACTAACTGATTCTGTTTCATAAACAGCCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCTCA ************************************************............................(((((..((((...........))))....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553486 Makindu_3 day-old ovaries	M053 female body	O001 Testis	M023 head	SRR553485 Chicharo_3 day-old ovaries	SRR902009 testis	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.........................................................................................................................................CCCACTGTCACCGATGAGGAGGCTC.	25	0	1	1.00	1	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................CACTGTCACCGATGAGGA......	18	0	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................TGTTCCGAACTAACTGAT..................................................................	18	0	2	1.00	2	0	0	0	2	0	0	0	0	0	0
.......................................................................ATGCAAACTGTTCCGAACTAA.......................................................................	21	0	3	1.00	3	0	3	0	0	0	0	0	0	0	0
...................................................................CTTAATGCAAACTGTTCCGAAC..........................................................................	22	0	3	1.00	3	0	0	0	3	0	0	0	0	0	0
.....................................................................TAATGCAAACTGTTCCGAACT.........................................................................	21	0	3	1.00	3	0	3	0	0	0	0	0	0	0	0
.................CTCAAGGTAGTGGCCACTCC..............................................................................................................................	20	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................GTCATGATCCTGCCCACG....................	18	1	2	0.50	1	1	0	0	0	0	0	0	0	0	0
............................................................................AACTGTTCCGAACTAACTGATT.................................................................	22	0	2	0.50	1	0	0	0	0	1	0	0	0	0	0
...AGCTGACTGATCGCCTCAAGGTAGT.......................................................................................................................................	25	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................GCACTAAGGTCATGATCCTGCCCACTG...................	27	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0
..........................................................................CAAACTGTTCCGAACTAACTGATT.................................................................	24	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
......................................................................................................................CACTAAGGTCATGATCCTGCCCACT....................	25	0	2	0.50	1	0	0	1	0	0	0	0	0	0	0
........................................................................................................................CTAAGGTCATGATCCTGCCCACTGTC.................	26	0	2	0.50	1	1	0	0	0	0	0	0	0	0	0
...........................................................TCTACCCACTTAATGCAAACT...................................................................................	21	0	3	0.33	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................TTCATAAACAGCCTGGCACTAAGGT....................................	25	0	3	0.33	1	0	1	0	0	0	0	0	0	0	0
TGCAGCTGACTGATCGCCT................................................................................................................................................	19	0	4	0.25	1	1	0	0	0	0	0	0	0	0	0
.....................................................................AAATGCAAACTGTTCCGAACT.........................................................................	21	1	4	0.25	1	0	1	0	0	0	0	0	0	0	0
...AGCTGACTGATCGCCTCAAG............................................................................................................................................	20	0	4	0.25	1	1	0	0	0	0	0	0	0	0	0
TGCAGCTGACTGATCGCCTCT..............................................................................................................................................	21	1	4	0.25	1	0	0	0	0	0	0	1	0	0	0
...AGCTGACTGATCGCCTCAAGG...........................................................................................................................................	21	0	4	0.25	1	0	0	0	0	0	1	0	0	0	0
.......GACTGAACGCCTCTAAGTAG........................................................................................................................................	20	3	5	0.20	1	0	0	0	0	0	0	0	1	0	0
........................................................................TGCAAACTGTTCCGTATTAAA......................................................................	21	3	6	0.17	1	0	1	0	0	0	0	0	0	0	0
.......GACTGAACGCCTCAAGT...........................................................................................................................................	17	2	16	0.06	1	0	0	0	0	0	0	0	0	1	0
.............................................................................ACTGGACCGAACTAACT.....................................................................	17	2	17	0.06	1	0	0	0	0	0	0	0	0	0	1
....GATGACTGAACGCCTC...............................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	1	0	0	0	0

ACGTCGACTGACTAGCGGAGTTCCATCACCGGTGAGGGCGGTTGACCTGGCATTCAAAAAGATGGGTGAATTACGTTTGACAAGGCTTGATTGACTAAGACAAAGTATTTGTCGGACCGTGATTCCAGTACTAGGACGGGTGACAGTGGCTACTCCTCCGAGT ************************************************............................(((((..((((...........))))....)))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	M023 head	SRR902009 testis	O001 Testis	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
.......................................................................................................AGTATTTGTCGGACCGTGATTCCAGT..................................	26	0	3	3.67	11	5	4	2	0	0	0	0	0	0
...................................................................................................................................TAGGACGGGTGACAGTGGCTACTCCT......	26	0	1	2.00	2	2	0	0	0	0	0	0	0	0
................................................................................CAAGGCTTGATTGACTAAGAC..............................................................	21	0	2	1.50	3	0	0	0	1	2	0	0	0	0
...................................................................................................................................TAGGACGGGTGACAGTGGCTA...........	21	0	2	1.00	2	2	0	0	0	0	0	0	0	0
............................................................................................................................................TGACAGTGGCTACTCCTC.....	18	0	1	1.00	1	0	0	0	0	0	0	1	0	0
......................................................................................................AAGTATTTGTCGGACCGTGATTCCAGT..................................	27	0	3	1.00	3	1	1	1	0	0	0	0	0	0
......................................................................................................................................GACGGGTGACAGTGGCTACTC........	21	0	1	1.00	1	1	0	0	0	0	0	0	0	0
............................................................................................................TTGTCGGACCGTGATTCCAGTACTAGGA...........................	28	0	3	1.00	3	0	3	0	0	0	0	0	0	0
..................................................................................................................................CTAGGACGGGTGACAGTGGCTACT.........	24	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.....................................................................................................................CGTGATTCCAGTACTAGGACGGGT......................	24	0	3	0.67	2	2	0	0	0	0	0	0	0	0
...............................................................GGGTGAATTACGTTTGACAAGGCTT...........................................................................	25	0	3	0.67	2	0	2	0	0	0	0	0	0	0
....................................................................................................................................AGGACGGATGACAGCGGCTAC..........	21	2	2	0.50	1	0	0	0	0	0	0	0	0	1
.................................................................................................................................ACTAGGGCGGGTGACAGTGGC.............	21	1	2	0.50	1	0	0	0	0	0	1	0	0	0
....................................................................................................................................AGGACGGGTGACAGT................	15	0	2	0.50	1	0	0	0	0	0	0	0	1	0
.................................................................................................................................TTTTGGACGGGTGACAGTGGCTA...........	23	3	2	0.50	1	0	0	0	0	0	1	0	0	0
.................................................................................................................................TCTAGGACGGGTGACAGTGGCT............	22	1	2	0.50	1	0	1	0	0	0	0	0	0	0
.................................GAGGGCGGTTGACCTGGCATT.............................................................................................................	21	0	3	0.33	1	0	0	0	1	0	0	0	0	0
.............................CGGTGAGGGCGGTTGACCTGGCAT..............................................................................................................	24	0	3	0.33	1	0	1	0	0	0	0	0	0	0
......................................................................TTACGTTCGACAAGGCTTGATT.......................................................................	22	1	3	0.33	1	0	1	0	0	0	0	0	0	0
...........................TCCGGTGAGGGCGGTTGACCTG..................................................................................................................	22	1	3	0.33	1	0	0	1	0	0	0	0	0	0
.....................................................................................................CAAGTATTTGTCGGACCGTGATTCCAGT..................................	28	1	3	0.33	1	0	1	0	0	0	0	0	0	0
...................................................................................................................ACCGTGATTCCAGTACTAGGACGGGT......................	26	0	3	0.33	1	1	0	0	0	0	0	0	0	0
.............................................................ATGGGTGAATTACGTTTGACA.................................................................................	21	0	3	0.33	1	0	1	0	0	0	0	0	0	0
......................................................................................................................GTGATTCCAGTACTAGGACGG........................	21	0	3	0.33	1	0	0	0	0	0	1	0	0	0
................................................................................................................CGGACCGTGATTCCAGTACTAGGAC..........................	25	0	3	0.33	1	0	1	0	0	0	0	0	0	0
................................TGAGGGCGGTTGTCCTGG.................................................................................................................	18	1	3	0.33	1	0	0	0	1	0	0	0	0	0
..........................................................................................................ATTTGTCGGACCGTGATTCCAGT..................................	23	0	3	0.33	1	0	0	1	0	0	0	0	0	0
....................................................................................................CAAAGTATTTGTCGGACCGTGATTCCAGT..................................	29	0	3	0.33	1	0	1	0	0	0	0	0	0	0
....................................................................................................................CCGTGATTCCAGTACTAGGGC..........................	21	1	3	0.33	1	0	0	0	0	1	0	0	0	0
......................................................................................................................................GACGGGTGACAGTGGT.............	16	1	4	0.25	1	0	0	0	0	0	0	0	1	0
............TGGCGGAGTTCCATCGC......................................................................................................................................	17	2	6	0.17	1	0	0	0	1	0	0	0	0	0
.........................................................GAAGATAGGTGACTTACGTTT.....................................................................................	21	3	7	0.14	1	0	0	0	1	0	0	0	0	0
.......................................................................................................................................ACGGGTGACAGTGGT.............	15	1	14	0.14	2	0	1	0	0	0	0	0	1	0

Species	Coordinate	ID	Alignment
droSim2	2r:7082883-7083045 -	dsi_2539	TGCAGCTGACTGATCGCCTCAAGGTAGTGGCCACTCCCGCCAACTGGACCGTAAGTTTTTCT------------------------------------A-----------CCCACT---------------TAATGCAAACTG-TTCCGAA----C-TAACTGAT-TCTGT----TTC-ATAAACAGCCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCTCA
droSec2	scaffold_1:3925646-3925808 +		TGCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCCGCCAACTGGACCGTAAGTTTCTCT------------------------------------A-----------CCCACT---------------TAATGCAAACTG-TTCCGAA----C-TAACTAAT-TCTGT----TTC-ATAAACAGCCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCTCA
dm3	chr2R:6312646-6312808 +		TGCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCCGCCAACTGGACCGTAAGTTTTTCT------------------------------------A-----------CCCACT---------------TAATGCGAACTG-TTCCGAA----C-TAATTAAT-TCTGT----TTC-ATAAACAGCCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCTCA
droEre2	scaffold_4929:8066061-8066219 +		TGCAGCTGACTGATCGCCTCAAGGTCGTGGCCACTCCTGCCAACTGGACCGTGAGTATTTCT------------------------------------A-----------CCTACT---------------TAATGGAAACTG-TGTCGTT----C-TAACTA-----TGA----TTC-CTAAATAGCCTGGCACTAAGGTCATGATCCTGCCCTCTGTCACCGATGAGGAGGCCCA
droYak3	v2_chr2L_random_003:977-1135 -		TGCAGTTGACTGATCGCCTCAAGGTCGTGGCCACTCCTGCCAACTGGACCGTGAGTATTTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTTCGTA----C-TAACTA-----TGA----TTT-GTTAATAGCCTGGCACTAAGGTAATGATCCTGCCCACCGTCACTGATGAGGAGGCCCA
droEug1	scf7180000409672:4703406-4703563 +		TGCAGCTTACTGATCGTCTCAAGGTGGTGGCCACTCCTGCTAACTGGACTGTAAGTATTTCT------------------------------------G-----------CTAACT---------------AAATCCTACTGA-ATTCTTA----C-TAATTG-----TTC----GTA--ATTATAGCCTGGCACCAAGGTAATGATCCTGCCCACTGTCACCGATGAAGAAGCCCA
droBia1	scf7180000300451:236-394 +		TGCAGCTGACCGATCGCCTCAAGGTGGTGGCCACCCCGGCCAACTGGACGGTGAGTAGTCCC------------------------------------A-----------CTTATA---------------AAACAAGAGACA-ATCCCTA----A-TTGATG-----TGA----TCC-CCCAACAGCCTGGCACCAAGGTCATGATCCTGCCCACCGTCACCGACGAGGAGGCCCA
droTak1	scf7180000415683:143891-144049 +		TTCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCAGCCAACTGGACTGTAAGTACTATC------------------------------------C-----------CCGATG---------------GAATTCAATTGA-ATCCCCA----C-TAATCG-----TGC----TTC-TTCAATAGCCTGGCACCAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCCCA
droEle1	scf7180000491349:1151705-1151869 -		TGCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCAGCTAATTGGACTGTGAGTGTTTCT------------------------------------G-----------TTGACTAGTTACTTACTTACTTAT----------CTCCTTA----C-TAATTG-----TGC----TTC-TTCAACAGCCTGGCACCAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCCCA
droRho1	scf7180000769238:1320-1477 -		TGCAGCTGACTGATCGCCTCAAGGTTGTGGCTACTCCAGCCAACTGGACTGTGAGTATT-CT------------------------------------G-----------CTTATG---------------AATTCTTAGTTA-TTCCCCT----C-TAATTG-----TGA----TTT-TTCTGTAGCCTGGCACCAAGGTCATGATTCTGCCCACTGTCACCGATGAGGAGGCCCA
droFic1	scf7180000454066:1380358-1380515 -		TGCAGCTGACTGATCGCCTCCAGGTTGTGGCCACTCCTGCCAATTGGACTGTAAGTAATTCT------------------------------------A-----------CTTTTT---------------GAACCCAAGTTA-GGCCTTA----C-TAATTA-----TTA----TTT--TTATTAGCCTGGCACCAAGGTCATGATCCTGCCTTCGGTCACCGATGAGGAGGCCCA
droKik1	scf7180000302817:644550-644711 -		TGCAGCTGACTGATCGCCTTAAGGTGGTGGCCACTCCAGCCAACTGGACTGTAAGTATTATT------------------------------------T---------A-GCCGAT---------------TGATTG-ATGGA-TTCCAGA-TTAC-TGATTG-----TTA----TTT-TTTGATAGCCTGGAACCAAGGTCATGATCCTGCCCACCGTCACCGATGAAGAGGCCCA
droAna3	scaffold_13266:4766585-4766743 -		TCCAGCTGACTGATCGCCTCAAGGTGGTGGCCACCCCCGCCAACTGGACTGTGAGTATCTT-------------------------------------A-----------GGTTGT---------------TACTTCAAGGGA-ATCCTTT----C-TAATTA-----TGA----TTTCTTCTCCAGCCTGGCACCAAGGTCATGATCCTTCCCACGGTCTCCGACGAGGAGGCCCA
droBip1	scf7180000395751:572765-572924 -		TCCAGTTGACTGATCGCCTCAAGGTGGTGGCTACCCCCGCCAACTGGACTGTGAGTATTTCA------------------------------------G-----------ATTGTT---------------ACTTC-AAGGGA-ATCTATT----CTTATTTA-----TGA----TTTTTCCTCTAGCCTGGTACCAAGGTCATGATCCTGCCCACCGTCTCCGACGAGGAGGCCCA
dp5	3:7142280-7142447 +		TGCAGCTGACGGATCGTCTGAAGGTGGTGGCCACTCCAGCCAACTGGACTGTGAGTATTCGT------------------------------------ATACC---TGA-GCCAG----------CTGAGGGAT----------CTCCAAA----C-TGATTGTGATATGTTT---TT-TCCCCTAGCCCGGCACCAAGGTCATGATCCTGCCCACAGTCACAGACGAGGAGGCTAA
droPer2	scaffold_2:7341726-7341893 +		TGCAGCTGACGGATCGTCTGAAGGTGGTGGCCACTCCAGCCAACTGGACTGTGAGTATTCGT------------------------------------ATACC---TGA-GCCAG----------CTGAGGGAT----------CTCCAAA----C-TGATTGTGATATGTTT---TT-TCCCCTAGCCCGGCACCAAGGTCATGATCCTGCCCACAGTCACAGACGAGGAGGCTAA
droWil2	scf2_1100000004822:2483186-2483352 +		TGCAGCTGACCGATCGCTTGAAAGTGGTGGCTACTCCAGCCAATTGGACGGTAAGCATCAAC---------------------------------TAC-----TTTTTTGCCCATT------------ATTA------AATTG-AGATTTAGTAAC-AGTT-------TGT----TTC-TTCTTTAGCCCGGCACCAAAGTCATGATCCTGCCGACTGTCACCGATGAAGAGGCTCA
droVir3	scaffold_12875:16258017-16258186 -		TGCAGCTGACCGATCGCTTGAAGGTGGTTGCCACGCCCGCCAACTGGACTGTGAGTATATTATATAATTTTTTTTTTTTTTGGGCTTTCATTAAACGCATACTTTCTGTGCA-------------------------------------------------------------------CACTGTAGCCCGGCACCAAGGTCATGATCTTGCCAAGCGTCACCGACGAGGAGGCCCA
droMoj3	scaffold_6496:7497088-7497258 +		TGCAGCTGACCGATCGCCTAAAGGTGGTTGCCACGCCCGCCAATTGGACTGTAAGTCCCTAA---------------------------------CTC-----TTATATTCTCTG------------TATGGAA----------TTATAAA----C-TCATTTCATTATTCTTGCCAC-CACTGTAGCCTGGCACCAAGGTCATGATCTTGCCCTCCGTCACCGACGAAGACGCCCA
droGri2	scaffold_8430:1771-1939 -		TGCAGCTGACCGATCGATTGAAGGTGGTTGCCACGCCTGCCAACTGGACTGTGAGTATTATT------------------------------------T---------A-AGAATA---------------TAATCT-GTAGATTTGGTAA----C-TGATTGTTTGCTGTTTCTTCC-AACTGCAGCCCGGTACCAAGGTCATGATCTTGCCCTGCGTCACCGATGCGGAAGCCCA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droSim2

TGCAGCTGACTGATCGCCTCAAGGTAGTGGCCACTCCCGCCAACTGGACCGTAAGTTTTTCT------------------------------------A-----------CCCACT---------------TAATGCAAACTG-TTCCGAA----C-TAACTGAT-TCTGT----TTC-ATAAACAGCCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCTCA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................................................................................CCCACTGTCACCGATGAGGAGGCTC.	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................CACTGTCACCGATGAGGA......	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TG-TTCCGAA----C-TAACTGAT-.......................................................................	18	2	1.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................ATGCAAACTG-TTCCGAA----C-TAA.............................................................................	21	3	1.00	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
..................................................................................................................CT---------------TAATGCAAACTG-TTCCGAA----C-................................................................................	22	3	1.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................TAATGCAAACTG-TTCCGAA----C-T...............................................................................	21	3	1.00	3	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0
.................CTCAAGGTAGTGGCCACTCC........................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTCATGATCCTGCCCACG....................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................AACTG-TTCCGAA----C-TAACTGAT-T......................................................................	22	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCTGACTGATCGCCTCAAGGTAGT.................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................GCACTAAGGTCATGATCCTGCCCACTG...................	27	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................CAAACTG-TTCCGAA----C-TAACTGAT-T......................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................CACTAAGGTCATGATCCTGCCCACT....................	25	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CTAAGGTCATGATCCTGCCCACTGTC.................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................TCT------------------------------------A-----------CCCACT---------------TAATGCAAACT...............................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTC-ATAAACAGCCTGGCACTAAGGT....................................	25	3	0.33	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
TGCAGCTGACTGATCGCCT..........................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCTGACTGATCGCCTCAAG......................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
TGCAGCTGACTGATCGCCTCT........................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...AGCTGACTGATCGCCTCAAGG.....................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0

droSec2

TGCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCCGCCAACTGGACCGTAAGTTTCTCT------------------------------------A-----------CCCACT---------------TAATGCAAACTG-TTCCGAA----C-TAACTAAT-TCTGT----TTC-ATAAACAGCCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCTCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

dm3

TGCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCCGCCAACTGGACCGTAAGTTTTTCT------------------------------------A-----------CCCACT---------------TAATGCGAACTG-TTCCGAA----C-TAATTAAT-TCTGT----TTC-ATAAACAGCCTGGCACTAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCTCA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.................................................................................................................................................................................................................TGCCCACTGTCACCGATGAG........	20	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GACTGATCGCCTCAAGGTGGT.................................................................................................................................................................................................................	21	4	7.50	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	11	1	0	0
.....................................................................................................................................................................................................................CACTGTCACCGATGAGGAGGC...	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCTGACTGATCGCCTCAAGG.....................................................................................................................................................................................................................	21	4	2.75	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....GCTGACTGATCGCCTCAAGGT....................................................................................................................................................................................................................	21	4	2.50	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................TCATGATCCTGCCCACTGTCA................	21	3	2.33	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
................................................................................................................................................................................................................CTGCCCACTGTCACCGATGAG........	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TTCCGAA----C-TAATTAAT-TCTGT----..............................................................	21	4	1.50	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................................................................................................................CTGCCCACTGTCACCGATGAGGAG.....	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCCCACTGTCACCGATGAGGAGGCTC.	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.......................................................................................................................................................................................................................CTGTCACCGATGAGGAGGC...	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........GATCGCCTCAAGGTGGTGGCC.............................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................CTCCCGCCAACTGGACCCC.........................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........ACTGATCGCCTCAAGGTGGTG................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GACTGATCGCCTCAAGGTGG..................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TTTCT------------------------------------A-----------CCCACT---------------TAATGCGAAC................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................A----C-TAATTAAT-TCTGT----TTC-ATA.......................................................	21	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................ACTGGACCGTAAGTTTTTC................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEre2

TGCAGCTGACTGATCGCCTCAAGGTCGTGGCCACTCCTGCCAACTGGACCGTGAGTATTTCT------------------------------------A-----------CCTACT---------------TAATGGAAACTG-TGTCGTT----C-TAACTA-----TGA----TTC-CTAAATAGCCTGGCACTAAGGTCATGATCCTGCCCTCTGTCACCGATGAGGAGGCCCA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...AGCTGACTGATCGCCTCAAGGTCGT.................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	2	0	0
.......................................................TATTTCT------------------------------------A-----------CCTACT---------------TAATGG....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
TGCAGCTGACTGATCGCCTCAAGGTCGT.................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	1	0	0
...............................................................................................................................................................................................GCACTAAGGTCATGATCCTG..........................	20	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................CATGATCCTGCCCTCTGT..................	18	2	0.50	1	0	1	0	0	0	0	0
...........GATCGCCTCAAGGTCGTG................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................CATGATCCTGCCCTCTGTCACC..............	22	2	0.50	1	0	0	0	1	0	0	0
...........GATCGCCTCAAGGTCGTGGCCACTC.........................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0
...AGCTGACTGATCGCCTCAAG......................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1	0
....GCTGACTGATCGCCTCAAGGT....................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	1	0
.....................AGGTCGTGGCCACTCCTGCCAACTGGA.............................................................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0	0
...................................................................................................................T---------------TAATGGAAACTG-TGTCGTT----C-................................................................................	21	2	0.50	1	0	0	0	0	0	1	0
....................AAGGTCGTGGCCACTCCTGC.....................................................................................................................................................................................................	20	2	0.50	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................GTCATGATCCTGCCCTCTGT..................	20	2	0.50	1	0	0	1	0	0	0	0

droYak3

TGCAGTTGACTGATCGCCTCAAGGTCGTGGCCACTCCTGCCAACTGGACCGTGAGTATTTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTTCGTA----C-TAACTA-----TGA----TTT-GTTAATAGCCTGGCACTAAGGTAATGATCCTGCCCACCGTCACTGATGAGGAGGCCCA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGGTAATGA...............................	25	4	42.50	170	0	169	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCCTGCCCACCGTCACTGATGAGGAG.....	26	1	23.00	23	0	4	0	0	0	0	0	0	0	0	19
TGCAGTTGACTGATCGCCTCAAGGTCG..................................................................................................................................................................................................................	27	6	20.00	120	0	76	0	3	1	0	40	0	0	0	0
TGCAGTTGACTGATCGCCTCAAGGT....................................................................................................................................................................................................................	25	6	9.83	59	1	32	1	0	0	0	8	0	0	0	17
..............................................................................................................................................................................................................TCCTGCCCACCGTCACTGATGAGGA......	25	1	9.00	9	0	0	0	0	0	0	0	0	0	0	9
..................TCAAGGTCGTGGCCACTCCTGCCAAC.................................................................................................................................................................................................	26	4	8.25	33	1	20	1	0	0	0	0	0	0	0	11
......TGACTGATCGCCTCAAGGTCGTGGC..............................................................................................................................................................................................................	25	5	6.00	30	0	17	0	0	0	0	2	0	0	0	11
......................................................................................................................................................................................AATAGCCTGGCACTAAGGTAATGA...............................	24	4	6.00	24	0	24	0	0	0	0	0	0	0	0	0
..........................................................TTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TT...........................................................................................	25	2	5.50	11	0	1	0	0	0	0	0	0	0	0	10
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGGTAATG................................	24	4	4.25	17	0	17	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCCACCGTCACTGATGAGGAGGCCCA	28	1	4.00	4	0	2	0	0	0	0	0	0	0	0	2
........................TCGTGGCCACTCCTGCCAACTGGAC............................................................................................................................................................................................	25	4	3.25	13	0	1	0	0	0	0	0	0	0	0	12
.............................................................................................................................................................TAACTA-----TGA----TTT-GTTAATAGCCTGGCAC..........................................	28	4	3.25	13	0	7	6	0	0	0	0	0	0	0	0
......TGACTGATCGCCTCAAGGTCGTGGCCAT...........................................................................................................................................................................................................	28	4	2.75	11	0	0	0	0	0	0	0	0	0	0	11
.................................................................................................................................................................TA-----TGA----TTT-GTTAATAGCCTGGCACT.........................................	25	4	2.75	11	0	4	7	0	0	0	0	0	0	0	0
TGCAGTTGACTGATCGCCTCAAGGTC...................................................................................................................................................................................................................	26	6	2.67	16	0	13	2	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGGTAATGAT..............................	26	4	2.50	10	0	9	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGA----TTT-GTTAATAGCCTGGCACTAAGG.....................................	27	4	2.50	10	0	9	1	0	0	0	0	0	0	0	0
.....................................TGCCAACTGGACCGTGAGTATTTCT------------------------------------A-----------CC.............................................................................................................................	28	2	2.00	4	0	2	2	0	0	0	0	0	0	0	0
TGCAGTTGACTGATCGCCTCAAGG.....................................................................................................................................................................................................................	24	6	2.00	12	0	12	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGGTAATGATCC............................	28	4	1.75	7	0	7	0	0	0	0	0	0	0	0	0
....................................................GAGTATTTCT------------------------------------A-----------CCTACT---------------TCCTGCA...................................................................................................	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0	0
..........TGATCGCCTCAAGGTCGTGGCCACTCC........................................................................................................................................................................................................	27	4	1.50	6	0	4	2	0	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACCGT.........................................................................................................................................................................................	25	4	1.50	6	0	3	3	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TAAGGTAATGATCCTGCCCACCGTC.................	25	4	1.50	6	0	6	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGA----TTT-GTTAATAGCCTGGCACTAAG......................................	26	4	1.50	6	0	4	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................TAGCCTGGCACTAAGGTAATGATCC............................	25	4	1.50	6	0	3	2	1	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACCGTGAG......................................................................................................................................................................................	28	4	1.50	6	0	4	2	0	0	0	0	0	0	0	0
.........................CGTGGCCACTCCTGCCAACTGGACCG..........................................................................................................................................................................................	26	4	1.25	5	0	4	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGGTAATGATC.............................	27	4	1.25	5	0	5	0	0	0	0	0	0	0	0	0
.GCAGTTGACTGATCGCCTCAAGGTCG..................................................................................................................................................................................................................	26	6	1.17	7	0	7	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCCCACCGTCACTGATGAGGAGG....	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAATGATCCTGCCCACCGTCACTGATG..........	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................CGTGGCCACTCCTGCCAACTGGACC...........................................................................................................................................................................................	25	4	1.00	4	0	0	4	0	0	0	0	0	0	0	0
................................................................................................................TACT---------------TCCTGCAAGCTG-TTTCGTA----C-TAAC............................................................................	28	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCCACCGTCACTGATGAGGAGGCCC.	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGA----TTT-GTTAATAGCCTGGCACTAA.......................................	25	4	1.00	4	0	3	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................TCCTGCCCACCGTCACTGATGAGG.......	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGATCCTGCCCACCGTCACTGATGA.........	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................TCGTGGCCACTCCTGCCAACTGGACCG..........................................................................................................................................................................................	27	4	1.00	4	0	2	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCCACCGTCACTGATGAGGAGGCC..	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TA-----TGA----TTT-GTTAATAGCCTGGCAC..........................................	24	4	1.00	4	0	2	2	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCCACCGTCACTGATGAGGAGGC...	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................GAGTATTTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGC................................................................................................	27	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCCACCGTCACTGATGAGGAGG....	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................TACT---------------TCCTGCAAGCTG-TTTCGTA----C-T...............................................................................	25	2	1.00	2	0	1	1	0	0	0	0	0	0	0	0
.........................................................TTTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TT...........................................................................................	26	2	1.00	2	0	1	1	0	0	0	0	0	0	0	0
......................................................................................................................................................A----C-TAACTA-----TGA----TTT-GTTAATAGCCTGG.............................................	27	4	1.00	4	0	1	0	0	0	0	0	0	0	0	3
.............................................................T------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTTCG........................................................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
................................................................................................................TACT---------------TCCTGCAAGCTG-TTTCGTA----C-................................................................................	24	2	1.00	2	0	1	1	0	0	0	0	0	0	0	0
.................................................CGTGAGTATTTCT------------------------------------A-----------CCTACT---------------TCCTGCA...................................................................................................	27	2	1.00	2	0	2	0	0	0	0	0	0	0	0	0
..........TGATCGCCTCAAGGTCGTGGCCACTC.........................................................................................................................................................................................................	26	4	1.00	4	0	2	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAATGATCCTGCCCACCGTCACTGAT...........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGATCCTGCCCACCGTCACTGATGAG........	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................ACCGTCACTGATGAGGAGGCCCA	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................TGATCCTGCCCACCGTCACTGAT...........	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
TGCAGTTGACTGATCGCCTCAAGGTCGT.................................................................................................................................................................................................................	28	6	0.83	5	0	4	0	0	0	0	1	0	0	0	0
......TGACTGATCGCCTCAAGGTCGTGG...............................................................................................................................................................................................................	24	5	0.80	4	0	4	0	0	0	0	0	0	0	0	0
.......GACTGATCGCCTCAAGGTCGTGGC..............................................................................................................................................................................................................	24	5	0.80	4	0	4	0	0	0	0	0	0	0	0	0
.....TTGACTGATCGCCTCAAGGTCGTGGC..............................................................................................................................................................................................................	26	5	0.80	4	0	4	0	0	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACCGTG........................................................................................................................................................................................	26	4	0.75	3	0	2	1	0	0	0	0	0	0	0	0
.......GACTGATCGCCTCAAGGTCGTGGCCAT...........................................................................................................................................................................................................	27	4	0.75	3	0	0	0	0	0	0	0	0	0	0	3
........................TCGTGGCCACTCCTGCCAACTGGACC...........................................................................................................................................................................................	26	4	0.75	3	0	1	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTT-GTTAATAGCCTGGCACTAAGGTA...................................	26	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
..................TCAAGGTCGTGGCCACTCCTGCCAACT................................................................................................................................................................................................	27	4	0.75	3	0	0	3	0	0	0	0	0	0	0	0
........................TCGTGGCCACTCCTGCCAACTGGACCGT.........................................................................................................................................................................................	28	4	0.75	3	0	2	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGGTAAT.................................	23	4	0.75	3	0	3	0	0	0	0	0	0	0	0	0
............................................TGGACCGTGAGTATTTCT------------------------------------A-----------CCTACT---------------TC........................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAGCCTGGCACTAAGGTAATGATC.............................	24	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
..........................................................TTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTTCG........................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TAAGGTAATGATCCTGCCCACCGTCAC...............	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................T---------------TCCTGCAAGCTG-TTTCGTA----C-TAACTA-----.....................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.................CTCAAGGTCGTGGCCACTCCTGCCAAC.................................................................................................................................................................................................	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
......................................GCCAACTGGACCGTGAGTATTTCT------------------------------------A-----------CC.............................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGGCACTAAGGTAATGATCCTGCCCAC.....................	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
TGCAGTTGACTGATCGCCTCAAG......................................................................................................................................................................................................................	23	6	0.50	3	0	3	0	0	0	0	0	0	0	0	0
..................................TCCTGCCAACTGGACCGTGAGTATTTC................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............CGCCTCAAGGTCGTGGCCACTC.........................................................................................................................................................................................................	22	4	0.50	2	0	0	1	1	0	0	0	0	0	0	0
.....................................................................................................................................................TA----C-TAACTA-----TGA----TTT-GTTAATAGCC................................................	25	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TCGTA----C-TAACTA-----TGA----TTT-GT........................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..........TGATCGCCTCAAGGTCGTGGCCAC...........................................................................................................................................................................................................	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
........................TCGTGGCCACTCCTGCCAACTGGACA...........................................................................................................................................................................................	26	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2
..................................TCCTGCCAACTGGACCGTGAGTATTT.................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................TGCAAGCTG-TTTCGTA----C-TAACTA-----TGA----TT............................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCGTA----C-TAACTA-----TGA----TTT-GTT.......................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACCG..........................................................................................................................................................................................	24	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
....................AAGGTCGTGGCCACTCCTGCCAACT................................................................................................................................................................................................	25	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................TA-----TGA----TTT-GTTAATAGCCTGGCACTA........................................	26	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGA----TTT-GTTAATAGCCTGGCACTA........................................	24	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0
........................................CAACTGGACCGTGAGTATTTCT------------------------------------A-----------CCT............................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.GCAGTTGACTGATCGCCTCAAGGT....................................................................................................................................................................................................................	24	6	0.50	3	0	3	0	0	0	0	0	0	0	0	0
............ATCGCCTCAAGGTCGTGGCCACTCC........................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
..............CGCCTCAAGGTCGTGGCCACTCCTGC.....................................................................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ATAGCCTGGCACTAAGGTAATGA...............................	23	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
.............................................................T------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTTCGTA----C-................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................................................GAGTATTTCT------------------------------------A-----------CCTACT---------------TCCTGCAAG.................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................AACTA-----TGA----TTT-GTTAATAGCCTGGCAC..........................................	27	4	0.50	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................TTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-T............................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGCCAACTGGACCGTGAGTATTTCT------------------------------------...........................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................TGCCAACTGGACCGTGAG......................................................................................................................................................................................	18	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2
...................................................................................................................................TCCTGCAAGCTG-TTTCGTA----C-TAACTA-----T....................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................TCCTGCAAGCTG-TTTCGTA----C-TAAC............................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GTTAATAGCCTGGCACTAAGGTA...................................	23	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
......TGACTGATCGCCTCAAGGTCGTGGCCAC...........................................................................................................................................................................................................	28	4	0.50	2	0	1	1	0	0	0	0	0	0	0	0
.............TCGCCTCAAGGTCGTGGCCACTCCTGC.....................................................................................................................................................................................................	27	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................TCCTGCAAGCTG-TTTCGTA----C-TAACTA-----.....................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
....................AAGGTCGTGGCCACTCCTGCCAAC.................................................................................................................................................................................................	24	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
.........................................AACTGGACCGTGAGTATTTCT------------------------------------A-----------CCTAC..........................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........GATCGCCTCAAGGTCGTGGCCACTC.........................................................................................................................................................................................................	25	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
.......................................................TATTTCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-.............................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
........................TCGTGGCCACTCCTGCCAACTGGACCGA.........................................................................................................................................................................................	28	4	0.50	2	0	0	0	0	0	0	0	0	0	0	2
...................CAAGGTCGTGGCCACTCCTGCCAAC.................................................................................................................................................................................................	25	4	0.50	2	0	1	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................TA----C-TAACTA-----TGA----TTT-GTTAATAGCCTGG.............................................	28	4	0.50	2	0	2	0	0	0	0	0	0	0	0	0
..........TGATCGCCTCAAGGTCGTGGCC.............................................................................................................................................................................................................	22	5	0.40	2	0	0	2	0	0	0	0	0	0	0	0
....GTTGACTGATCGCCTCAAGGTCGTGGC..............................................................................................................................................................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
......TGACTGATCGCCTCAAGGTCGTGGCCA............................................................................................................................................................................................................	27	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
......TGACTGATCGCCTCAAGGTCGTGGCC.............................................................................................................................................................................................................	26	5	0.40	2	0	0	1	1	0	0	0	0	0	0	0
.......GACTGATCGCCTCAAGGTCGTGGCC.............................................................................................................................................................................................................	25	5	0.40	2	0	2	0	0	0	0	0	0	0	0	0
TGCAGTTGACTGATCGCCTCAAGGTCGTG................................................................................................................................................................................................................	29	5	0.40	2	0	0	0	0	0	0	2	0	0	0	0
..CAGTTGACTGATCGCCTCAAGGTCG..................................................................................................................................................................................................................	25	6	0.33	2	0	1	0	0	0	0	1	0	0	0	0
....GTTGACTGATCGCCTCAAGGT....................................................................................................................................................................................................................	21	6	0.33	2	0	0	0	0	1	0	1	0	0	0	0
.........................................................................................................................................................................GA----TTT-GTTAATAGCCTGGCACTAAGG.....................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................ATAGCCTGGCACTAAGGTAATGATC.............................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................CAAGGTCGTGGCCACTCCTGCCAACTG...............................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GA----TTT-GTTAATAGCCTGGCAC..........................................	21	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TA----C-TAACTA-----TGA----TTT-GTTAATAGCCT...............................................	26	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACCGTC........................................................................................................................................................................................	26	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.....................AGGTCGTGGCCACTCCTGCCAACTGG..............................................................................................................................................................................................	26	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGGCACTAAGGTAATGATCCTGCCC.......................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGCACTAAGGTAATGATCCTGCCCACCG...................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................GTGGCCACTCCTGCCAACTGGACCGT.........................................................................................................................................................................................	26	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............TCGCCTCAAGGTCGTGGCCACTCCT.......................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAACTA-----TGA----TTT-GTTAATAGCCTGGTC...........................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................TAGCCTGGCACTAAGGTAATGATCCT...........................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................TCGTGGCCACTCCTGCCAACTGGACT...........................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTT-GTTAATAGCCTGGCACTAAG......................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GA----TTT-GTTAATAGCCTGGCACTAAGGT....................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTT-GTTAATAGCCTGGCACTAAGG.....................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................TAACTA-----TGA----TTT-GTTAATAGCCTGGC............................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGA----TTT-GTTAATAGCCTGGCAC..........................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTT-GTTAATAGCCTGGCACTAAGGTAA..................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................GA----TTT-GTTAATAGCCTGGCACTAAG......................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................TT-GTTAATAGCCTGGCACTAAGGTAA..................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................AAGGTCGTGGCCACTCCTGCCAACTGG..............................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TA-----TGA----TTT-GTTAATAGCCTGGCACC.........................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GGCACTAAGGTAATGATCCTGCCCACC....................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.............TCGCCTCAAGGTCGTGGCCACTCCTGCC....................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........CTGATCGCCTCAAGGTCGTGGCCACT..........................................................................................................................................................................................................	26	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...............................CACTCCTGCCAACTGGACCGT.........................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0
...........GATCGCCTCAAGGTCGTGGCCACT..........................................................................................................................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGGCACTAAGGTAATGATCCTGCCCACC....................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATAGCCTGGCACTAAGGTAATGATCC............................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...............................CACTCCTGCCAACTGGAC............................................................................................................................................................................................	18	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACCGTGAA......................................................................................................................................................................................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
............ATCGCCTCAAGGTCGTGGCCACTCCTG......................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................T------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTT..........................................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTT-GTTAATAGCCTGGCACTAA.......................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................GGTAATGATCCTGCCCACCGT..................	21	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
..........................GTGGCCACTCCTGCCAACT................................................................................................................................................................................................	19	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TGGCACTAAGGTAATGATCCTGCC........................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.................CTCAAGGTCGTGGCCACTCCTGC.....................................................................................................................................................................................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATAGCCTGGCACTAAGGTAATGATC.............................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................TGA----TTT-GTTAATAGCCTGGCACTAAGGT....................................	28	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACC...........................................................................................................................................................................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................A----C-TAACTA-----TGA----TTT-GTTAATAGCCTG..............................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................AGCCTGGCACTAAGGTAATGATCC............................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................TCGTGGCCACTCCTGCCAACTGGT.............................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........GATCGCCTCAAGGTCGTGGCCACTCC........................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................CTCAAGGTCGTGGCCACTCCTGCCAACT................................................................................................................................................................................................	28	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............TCGCCTCAAGGTCGTGGCCACTCC........................................................................................................................................................................................................	24	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.....................AGGTCGTGGCCACTCCTGCC....................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................T-GTTAATAGCCTGGCACTAAGG.....................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..................TCAAGGTCGTGGCCACTCCTG......................................................................................................................................................................................................	21	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0
.......GACTGATCGCCTCAAGGTCGTGGCCAC...........................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................AAGGTCGTGGCCACTCCTGCC....................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0
......TGACTGATCGCCTCAAGGTCGTGGCCACT..........................................................................................................................................................................................................	29	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................................................TA-----TGA----TTT-GTTAATAGCCTGG.............................................	21	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................TCT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTT..........................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................AAGGTCGTGGCCACTCCTGCCAACTG...............................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........................CGTGGCCACTCCTGCCAACTGGACCGT.........................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...........................TGGCCACTCCTGCCAACTGGACCGTGA.......................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................T-GTTAATAGCCTGGCACTAAGGTAA..................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................ACTA-----TGA----TTT-GTTAATAGCC................................................	20	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TA----C-TAACTA-----TGA----TTT-GTTAATAGCCC...............................................	26	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................TT-GTTAATAGCCTGGCACTAAG......................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........................GTGGCCACTCCTGCCAACTGGACCCCT........................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TAATGATCCTGCCCACCGTCAC...............	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............................GCCACTCCTGCCAACTGGACCG..........................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................AAGGTAATGATCCTGCCCACCGTCAC...............	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................AATAGCCTGGCACTAAGGTAATGAT..............................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................GTTAATAGCCTGGCACTAAGGTAA..................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................TAAGGTAATGATCCTGCCCACCGT..................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................T-GTTAATAGCCTGGCACTAAGGTA...................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................AGGTAATGATCCTGCCCACCGC..................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................T------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TT...........................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............ATCGCCTCAAGGTCGTGGCCACTCCTGCC....................................................................................................................................................................................................	29	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGG.....................................	19	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................TAATAGCCTGGCACTAAGGTAA..................................	22	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
........................TCGTGGCCACTCCTGCCAACAC...............................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............................................................CT------------------------------------A-----------CCTACT---------------TCCTGCAAGCTG-TTT..........................................................................................	24	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................T-GTTAATAGCCTGGCACTAAGGT....................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
............ATCGCCTCAAGGTCGTGGCCACTCCT.......................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
..........TGATCGCCTCAAGGTCGTGGCCACT..........................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0	0	0	0	0
.........CTGATCGCCTCAAGGTCGTGGCCAC...........................................................................................................................................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
......TGACTGATCGCCTCAAGGTCGTG................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
............ATCGCCTCAAGGTCGTGGC..............................................................................................................................................................................................................	19	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
...AGTTGACTGATCGCCTCAAGGTCGTGGCC.............................................................................................................................................................................................................	29	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0
.....TTGACTGATCGCCTCAAGGTCGTGGCC.............................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......GACTGATCGCCTCAAGGTCGTG................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.....TTGACTGATCGCCTCAAGGTCGTGG...............................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
...........GATCGCCTCAAGGTCGTGGCC.............................................................................................................................................................................................................	21	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
.....TTGACTGATCGCCTCAAGGTCGTG................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.........CTGATCGCCTCAAGGTCGTGGCC.............................................................................................................................................................................................................	23	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0
.........CTGATCGCCTCAAGGTCGTGGCCA............................................................................................................................................................................................................	24	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0

droEug1

TGCAGCTTACTGATCGTCTCAAGGTGGTGGCCACTCCTGCTAACTGGACTGTAAGTATTTCT------------------------------------G-----------CTAACT---------------AAATCCTACTGA-ATTCTTA----C-TAATTG-----TTC----GTA--ATTATAGCCTGGCACCAAGGTAATGATCCTGCCCACTGTCACCGATGAAGAAGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGCAGCTGACCGATCGCCTCAAGGTGGTGGCCACCCCGGCCAACTGGACGGTGAGTAGTCCC------------------------------------A-----------CTTATA---------------AAACAAGAGACA-ATCCCTA----A-TTGATG-----TGA----TCC-CCCAACAGCCTGGCACCAAGGTCATGATCCTGCCCACCGTCACCGACGAGGAGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TTCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCAGCCAACTGGACTGTAAGTACTATC------------------------------------C-----------CCGATG---------------GAATTCAATTGA-ATCCCCA----C-TAATCG-----TGC----TTC-TTCAATAGCCTGGCACCAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGCAGCTGACTGATCGCCTCAAGGTGGTGGCCACTCCAGCTAATTGGACTGTGAGTGTTTCT------------------------------------G-----------TTGACTAGTTACTTACTTACTTAT----------CTCCTTA----C-TAATTG-----TGC----TTC-TTCAACAGCCTGGCACCAAGGTCATGATCCTGCCCACTGTCACCGATGAGGAGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGCAGCTGACTGATCGCCTCAAGGTTGTGGCTACTCCAGCCAACTGGACTGTGAGTATT-CT------------------------------------G-----------CTTATG---------------AATTCTTAGTTA-TTCCCCT----C-TAATTG-----TGA----TTT-TTCTGTAGCCTGGCACCAAGGTCATGATTCTGCCCACTGTCACCGATGAGGAGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGCAGCTGACTGATCGCCTCCAGGTTGTGGCCACTCCTGCCAATTGGACTGTAAGTAATTCT------------------------------------A-----------CTTTTT---------------GAACCCAAGTTA-GGCCTTA----C-TAATTA-----TTA----TTT--TTATTAGCCTGGCACCAAGGTCATGATCCTGCCTTCGGTCACCGATGAGGAGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCAGCTGACTGATCGCCTTAAGGTGGTGGCCACTCCAGCCAACTGGACTGTAAGTATTATT------------------------------------T---------A-GCCGAT---------------TGATTG-ATGGA-TTCCAGA-TTAC-TGATTG-----TTA----TTT-TTTGATAGCCTGGAACCAAGGTCATGATCCTGCCCACCGTCACCGATGAAGAGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TCCAGCTGACTGATCGCCTCAAGGTGGTGGCCACCCCCGCCAACTGGACTGTGAGTATCTT-------------------------------------A-----------GGTTGT---------------TACTTCAAGGGA-ATCCTTT----C-TAATTA-----TGA----TTTCTTCTCCAGCCTGGCACCAAGGTCATGATCCTTCCCACGGTCTCCGACGAGGAGGCCCA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................CCCACGGTCTCCGACGAGGAG.....	21	1	1.00	1	0	0	1	0	0	0
.......GACTGATCGCCTCAAGGTGGT.................................................................................................................................................................................................................	21	3	1.00	3	0	0	0	0	0	3
.......GACTGATCGCCTCAAGGT....................................................................................................................................................................................................................	18	3	1.00	3	0	0	0	0	0	3
.........CTGATCGCCTCAAGGTGGTGGCCACCCCC.......................................................................................................................................................................................................	29	3	0.33	1	0	1	0	0	0	0
............................GGCCACCCCCGCCAACTGGACTCCC........................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
........ACTGATCGCCTCAAGGTGGTGGCCACC..........................................................................................................................................................................................................	27	3	0.33	1	1	0	0	0	0	0
...........GATCGCCTCAAGGTGGTGGCCACCCCC.......................................................................................................................................................................................................	27	3	0.33	1	0	1	0	0	0	0
......................GGTGGTGGCCACCCCCGCCAACT................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
....................................................................................................................................................................................................AAGGTCATGATCCTTCCCACGGT..................	23	3	0.33	1	0	1	0	0	0	0

droBip1

TCCAGTTGACTGATCGCCTCAAGGTGGTGGCTACCCCCGCCAACTGGACTGTGAGTATTTCA------------------------------------G-----------ATTGTT---------------ACTTC-AAGGGA-ATCTATT----CTTATTTA-----TGA----TTTTTCCTCTAGCCTGGTACCAAGGTCATGATCCTGCCCACCGTCTCCGACGAGGAGGCCCA	Size	Hit Count	Total Norm	Total
No Reads

dp5

TGCAGCTGACGGATCGTCTGAAGGTGGTGGCCACTCCAGCCAACTGGACTGTGAGTATTCGT------------------------------------ATACC---TGA-GCCAG----------CTGAGGGAT----------CTCCAAA----C-TGATTGTGATATGTTT---TT-TCCCCTAGCCCGGCACCAAGGTCATGATCCTGCCCACAGTCACAGACGAGGAGGCTAA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............GTCTGAAGGTGGTGGCCACTCCAGC.....................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
............ATCGTCTGAAGGTGGTGGCCACTCC........................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................GGCCACTCCAGCCAACTGGAC............................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................TCACAGACGAGGAGGCTA.	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.....CTGACGGATCGTCTGAAGGTGGTGGC..............................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............ATCGTCTGAAGGTGGTGGCCACT..........................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................GGCACCAAGGTCATGATC.............................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.GCAGCTGACGGATCGTCTG.........................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........GGATCGTCTGAAGGTGGTGGC..............................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..............CGTCTGAAGGTGGTGGCCACTCC........................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................AGTCACAGACGAGGAGGCT..	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................CACAGACGAGGAGGCTAA	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................CACCAAGGTCATGATCCTGCC........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............GTCTGAAGGTGGTGGCCACTCC........................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......TGACGGATCGTCTGAAGGTGGTGGCC.............................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......GACGGATCGTCTGAAGGTGGTGGCC.............................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0
..............CGTCTGAAGGTGGTGGCCACTCCAGCC....................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......TGACGGATCGTCTGAAGGTGGTGGCCA............................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

TGCAGCTGACGGATCGTCTGAAGGTGGTGGCCACTCCAGCCAACTGGACTGTGAGTATTCGT------------------------------------ATACC---TGA-GCCAG----------CTGAGGGAT----------CTCCAAA----C-TGATTGTGATATGTTT---TT-TCCCCTAGCCCGGCACCAAGGTCATGATCCTGCCCACAGTCACAGACGAGGAGGCTAA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....GCTGACGGATCGTCTGAAGGTGGTGGCC.............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1

droWil2

TGCAGCTGACCGATCGCTTGAAAGTGGTGGCTACTCCAGCCAATTGGACGGTAAGCATCAAC---------------------------------TAC-----TTTTTTGCCCATT------------ATTA------AATTG-AGATTTAGTAAC-AGTT-------TGT----TTC-TTCTTTAGCCCGGCACCAAAGTCATGATCCTGCCGACTGTCACCGATGAAGAGGCTCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......GACCGATCGCTTGAAAGTGGT.................................................................................................................................................................................................................	21	2	1.50	3	0	0	2	1	0
......................................................................................................................................................................................................AGTCATGATCCTGCCGACTGTCACC..............	25	2	1.00	2	2	0	0	0	0
................................................................................................................................................................................................CACCAAAGTCATGATCCTGCCGACTG...................	26	2	1.00	2	2	0	0	0	0
.......GACCGATCGCTTGAAAGT....................................................................................................................................................................................................................	18	2	1.00	2	1	0	0	1	0
.................................................................................................................................................GATTTAGTAAC-AGTT-------TGT----TTC-T.........................................................	22	2	0.50	1	0	0	0	1	0
....................................................................................................................................................................................................................CGACTGTCACCGATGAAGA......	19	2	0.50	1	0	0	0	1	0
.......................................................................................................................................................................................................................CTGTCACCGATGAAGAGG....	18	2	0.50	1	0	0	0	1	0
...........................................................................................................................................................................................................TGATCCTGCCGACTGTCA................	18	2	0.50	1	1	0	0	0	0
........................................................................................................................................................................................................................TGTCACCGATGAAGAGGC...	18	2	0.50	1	0	0	0	0	1
......................................................................................................................................................................................................AGTCATGATCCTGCCGAC.....................	18	2	0.50	1	1	0	0	0	0
...................................................................................................................................................................................................................CCGACTGTCACCGATGAAGAGGC...	23	2	0.50	1	0	0	0	0	1
...AGCTGACCGATCGCTTGAAAG.....................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0
.....................................................................................................................................................................................................................GACTGTCACCGATGAAGA......	18	2	0.50	1	0	0	0	1	0
...............................................................................................................................................................................................................CCTGCCGACTGTCACCGATGAAGAGGCTC.	29	2	0.50	1	1	0	0	0	0
...............................................................................................................................................................................................................CCTGCCGACTGTCACCGATGAAGAGG....	26	2	0.50	1	1	0	0	0	0
......TGACCGATCGCTTGAAAGTGGT.................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0
..................TGAAAGTGGTGGCTACTCCAGCCA...................................................................................................................................................................................................	24	2	0.50	1	0	0	0	1	0
.....................................................................................................................................................................................................................GACTGTCACCGATGAAGAGGC...	21	2	0.50	1	0	0	0	0	1
....GCTGACCGATCGCTTGAAAGTGG..................................................................................................................................................................................................................	23	2	0.50	1	1	0	0	0	0
....................................................................................................................................................................................................AAAGTCATGATCCTGCCG.......................	18	2	0.50	1	1	0	0	0	0
.......................................................................................................................................................................................................................CTGTCACCGATGAAGAGGC...	19	2	0.50	1	0	0	0	1	0
....GCTGACCGATCGCTTGAAAGTGGT.................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0
....................................................................................................................................................................................................................CGACTGTCACCGATGAAGAGG....	21	2	0.50	1	0	0	0	1	0

droVir3

TGCAGCTGACCGATCGCTTGAAGGTGGTTGCCACGCCCGCCAACTGGACTGTGAGTATATTATATAATTTTTTTTTTTTTTGGGCTTTCATTAAACGCATACTTTCTGTGCA-------------------------------------------------------------------CACTGTAGCCCGGCACCAAGGTCATGATCTTGCCAAGCGTCACCGACGAGGAGGCCCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.......GACCGATCGCTTGAAGGTGGT.................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAGCGTCACCGACGAGGA......	18	1	2.00	2	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCTGACCGATCGCTTGAAGGTGGT.................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAGCGTCACCGACGAGGAGGCCCA	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
....GCTGACCGATCGCTTGAAGGT....................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCAAGCGTCACCGACGAGGA......	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCCAAGCGTCACCGACGAGGA......	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........CGATCGCTTGAAGGTGGTTGCCACGCCCGCCAAC.................................................................................................................................................................................................	34	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................TTGCCAAGCGTCACCGACGAGGA......	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................ACGCCCGCCAACTGGACT...........................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GACCGATCGCTTGAAGGTG...................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAGCGTCACCGACGAGGAGGC...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............................................................................................................................................................................................................CTTGCCAAGCGTCACCGACGAGGA......	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GATCTTGCCAAGCGTCACCGACG..........	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................GCCAAGCGTCACCGACGAGGAGGCCC.	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.GCAGCTGACCGATCGCTTGAAGGT....................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CAAGGTCATGATCTTGCCAAGCGT..................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................TTGAAGGTGGTTGCCACGCCCGCCAAC.................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................CACGCCCGCCAACTGGACTGT.........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
............ATCGCTTGAAGGTGGTTGCCACGC.........................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................GTCATGATCTTGCCAAGC....................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................AAGCGTCACCGACGAGGAGGCCC.	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCTGACCGATCGCTTGAAGGTGGTT................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CGCTTGAAGGTGGTTGCCACGC.........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............CGCTTGAAGGTGGTTGCCACGCC........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GACCGATCGCTTGAAGGT....................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CAAGCGTCACCGACGAGGAGGCC..	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGCTGACCGATCGCTTGAAGGT....................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................ATGATCTTGCCAAGCGTCACCGACGAG........	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TGCAGCTGACCGATCGCCTAAAGGTGGTTGCCACGCCCGCCAATTGGACTGTAAGTCCCTAA---------------------------------CTC-----TTATATTCTCTG------------TATGGAA----------TTATAAA----C-TCATTTCATTATTCTTGCCAC-CACTGTAGCCTGGCACCAAGGTCATGATCTTGCCCTCCGTCACCGACGAAGACGCCCA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................TTCATTATTCTTGCCAC-CACTGT....................................................	23	1	1.00	1	0	0	0	0	1	0
...............GCCTAAAGGTGGTTGCCAC...........................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0

droGri2

TGCAGCTGACCGATCGATTGAAGGTGGTTGCCACGCCTGCCAACTGGACTGTGAGTATTATT------------------------------------T---------A-AGAATA---------------TAATCT-GTAGATTTGGTAA----C-TGATTGTTTGCTGTTTCTTCC-AACTGCAGCCCGGTACCAAGGTCATGATCTTGCCCTGCGTCACCGATGCGGAAGCCCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................AGGTGGTTGCCACGCCTGCCAACTG...............................................................................................................................................................................................	25	2	0.50	1	1	0
....................................................................................................................................................................................................................CCTGCGTCACCGATGCGGAAGC...	22	2	0.50	1	1	0
...................GAAGGTGGTTGCCACGCC........................................................................................................................................................................................................	18	4	0.25	1	1	0

dsi_2539

2r:7082933-7082995 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-3.5	-3.0	-2.7