ID:

dsi_2538

 Coordinate:

3l:16097443-16097661 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-34.0 -34.0 -33.8

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TGCTGTTGGCTGTGCCGCTGATGAACAAGATCCTTGGATGGAGGGATACGGTGAGTTCTTATTACTAGCCATTGCTTGGCAAAGTCCAAAGTCTTGTCTATACAAATTTAAAAGGAATTAAGAGATTACCAAGTAGATGTTAACTTAATTTCGCTTGTCCAAAAGATTAACTTTCCAAGTGCTGTAATCCAATCAAAAATCCATTTAATAACTCAAATGGTTTTATTCATAGACCATCATTTTCATTGGCACCTGGGCGCATTCGATAGCCCGGTTGTTCTTCTATTTCGCCACCAATACGGACTTGCTCTACGCCGGA
**************************************************.((((((.(((((((.(((....((((((.(((((....((((((..................(((.....(((((((...(((........)))))))))).....)))..)))))).))))))))))))))))))..................))).)))))).(((((((.......)))))))...........((........)).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 M024
male body		 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR902009
testis
 SRR553488
RT_0-2 hours eggs
..................TGATGAACAAGATCCTTGGATGGAGGGA................................................................................................................................................................................................................................................................................. 28 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0
......................GAACAAGATCCTTGGATGGAGGGA................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................TCTTCTATTTCGCCACCAATACGGACT.............. 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
.GCTGTTGGCTGTGCCGCTGAT......................................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...................................................................................................................................................................................................................................................................................................CACCAACACGGACTTGCTCTACGCCGG. 27 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................................................................TAGCCACTGCGCGGCAAAGTCCA....................................................................................................................................................................................................................................... 23 3 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.......GGCTGTGCCGCTGATGAACAAGAT................................................................................................................................................................................................................................................................................................ 24 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......TGGCTGTGCCGCTGATGAACAAGA................................................................................................................................................................................................................................................................................................. 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........TGTGCCGCTGATGAACAAGATCCTGGGA......................................................................................................................................................................................................................................................................................... 28 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................AAGGAATTAAGAGAT................................................................................................................................................................................................. 15 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................GGATGAACAAGATCCTTGGATGGAGGGA................................................................................................................................................................................................................................................................................. 28 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........TGTGCCGCTGATGAACAAGATCCTTGGA......................................................................................................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
....GTTGGCTGTGCCGCTGATGAACAAGA................................................................................................................................................................................................................................................................................................. 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................................TTCGCCACCAATACGGACTTGCTCTACGC.... 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..........................AAGATCCTTGGATGGAGGGAT................................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................................................................................................ACCAATACGGACTTGCTCTACGCCGGA 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...................GATGAACAAGATCCTTGGATG....................................................................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.................................TTGGATGGAGGGATACGAC........................................................................................................................................................................................................................................................................... 19 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................................................CATTCGATAGCCCAGTTGT......................................... 19 1 2 0.50 1 0 0 0 0 0 0 0 1 0 0
..........TGTGACGCTAATGAACAAGGT................................................................................................................................................................................................................................................................................................ 21 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0
..............................................................................................................................TACCAAGAAGATGTTAAATT............................................................................................................................................................................. 20 2 3 0.33 1 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................CCCGGGCGCCTTCGATAGCT................................................ 20 3 3 0.33 1 0 0 0 0 0 0 0 1 0 0
.....................TGAACAAGGTCGTTGAATGG...................................................................................................................................................................................................................................................................................... 20 3 7 0.29 2 0 0 0 0 0 0 0 0 2 0
..................GGAAGAACAAGATCCTTGTA......................................................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.............GCGGCTGATGAACCGGATCCT............................................................................................................................................................................................................................................................................................. 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
.......................................................................TTGCTTGGCAACATCCAACGT................................................................................................................................................................................................................................... 21 3 5 0.20 1 0 1 0 0 0 0 0 0 0 0
................................................CGGTGAGTTCTTATA................................................................................................................................................................................................................................................................ 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................AGCCAGGTTGATCTTCTAAT................................ 20 3 9 0.11 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................AAGGAATTAAGAGATA................................................................................................................................................................................................ 16 1 9 0.11 1 1 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................................CTTTGGAAGCTGGGCGCATT........................................................ 20 3 12 0.08 1 0 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................GATACCCCGGTAGTTCTA..................................... 18 3 18 0.06 1 0 0 0 0 0 0 0 0 0 1
..............................................................................................................AAAGGAATTAAGACA.................................................................................................................................................................................................. 15 1 20 0.05 1 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

ACGACAACCGACACGGCGACTACTTGTTCTAGGAACCTACCTCCCTATGCCACTCAAGAATAATGATCGGTAACGAACCGTTTCAGGTTTCAGAACAGATATGTTTAAATTTTCCTTAATTCTCTAATGGTTCATCTACAATTGAATTAAAGCGAACAGGTTTTCTAATTGAAAGGTTCACGACATTAGGTTAGTTTTTAGGTAAATTATTGAGTTTACCAAAATAAGTATCTGGTAGTAAAAGTAACCGTGGACCCGCGTAAGCTATCGGGCCAACAAGAAGATAAAGCGGTGGTTATGCCTGAACGAGATGCGGCCT
**************************************************.((((((.(((((((.(((....((((((.(((((....((((((..................(((.....(((((((...(((........)))))))))).....)))..)))))).))))))))))))))))))..................))).)))))).(((((((.......)))))))...........((........)).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
.............CGGCGACTACTTGTTCTAGGA............................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0
..................................................................................................................................................................................................................................................................CGTAAGCTATCGGGCCAACAA........................................ 21 0 1 1.00 1 0 1 0 0 0
................................................................................................................................................................................................GGTTTTTAGGTAAATTAT............................................................................................................. 18 1 3 0.67 2 2 0 0 0 0
.................................................................................................................................................................................................GTTTTTAGGTAAATTA.............................................................................................................. 16 0 2 0.50 1 1 0 0 0 0
................................................................................................................................................................................................GGTTTTTAGGTAAATTA.............................................................................................................. 17 1 11 0.45 5 4 0 1 0 0
..........................................................................................................................................................................................................................................................................ATCGGTCCAACTAGAAGA................................... 18 2 3 0.33 1 1 0 0 0 0
................................................................................................................................................................................................GGTTTTTAGGTAAATTATA............................................................................................................ 19 2 12 0.33 4 0 0 4 0 0
.........................................................................CGAACCGTTTCAGGAT...................................................................................................................................................................................................................................... 16 1 3 0.33 1 1 0 0 0 0
...........................................................................................................................................................................................................................................................................TCGGTCCAACTAGAAGAT.................................. 18 2 3 0.33 1 0 0 1 0 0
.................................................................................................................................................................................................GTTTTTAGGTAAATTATA............................................................................................................ 18 1 4 0.25 1 0 0 1 0 0
..........................................................................GAATCGTTTCAGGTCTCA................................................................................................................................................................................................................................... 18 2 4 0.25 1 0 0 0 1 0
.........................................................................CGAACCGTTGCAGGAT...................................................................................................................................................................................................................................... 16 2 20 0.15 3 1 0 0 0 2
................................................................................................................................................................................................GGTTTTTAGGTAAATT............................................................................................................... 16 1 20 0.15 3 3 0 0 0 0
...........................................................................................................................................................................................AGTTTAGTTTTTAGGTA................................................................................................................... 17 1 9 0.11 1 1 0 0 0 0
.........................................................................................................................................................................................................................................................................GATCGGTCCAACTAGAAGA................................... 19 3 18 0.06 1 0 0 0 0 1
...........................................................................................................................................................................................................................................................................TCGGTCCAACTAGAAGA................................... 17 2 18 0.06 1 0 0 1 0 0
...........................................................................................................................................................................................................................................................................TCGGTCCAACTAGAAGATT................................. 19 3 19 0.05 1 0 0 1 0 0
................................................................................................................................................................................................................................................................................TCAACAAGAAGATAA................................ 15 1 20 0.05 1 1 0 0 0 0
...........................................................................................................................................................................................AGTTTAGTTTTTAGGT.................................................................................................................... 16 1 20 0.05 1 0 0 1 0 0
.........................................................................CGAACCGCTTCAGGAT...................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1 0 0
...........................................................................................................................................................................................................................................................................TCGGTCCAACTAGAAG.................................... 16 2 20 0.05 1 0 0 1 0 0
............................................................................................................................................................................................................................AAAATAATTATCTGG.................................................................................... 15 1 20 0.05 1 0 0 1 0 0

Generated: 04/24/2015 at 01:55 AM