ID:

dsi_25374

 Coordinate:

3l:8063980-8064111 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.0 -35.9 -35.7

Flybase annnotation

intergenic

No Repeatable elements found

mature
  1. 3l:3884120-3884139 +
  2. dsi_25374  3l:8064042-8064061 +
  3. 3l:8079825-8079844 +
  4. 3l:8959346-8959365 +
  5. 3l:9262962-9262981 +
  6. 3l:17156236-17156255 +
  7. 3l:24133485-24133504 +
  8. 3r:11770780-11770799 +
  9. 3r:18143187-18143206 +
  10. 3r:18502990-18503009 +
  11. x:2596219-2596238 +
  12. x:4196766-4196785 +
  13. x:4865932-4865951 +
  14. x:9566119-9566138 +
  15. x:11011690-11011709 +
  16. x:14405737-14405756 +
  17. x:17146959-17146978 +
  18. x:17520484-17520503 +
  19. x:18559607-18559626 +
  20. node_2610:4098-4117 +
star

Sense Strand Reads

GAACAATACGGCTGGCGAGGAGACCATCCAAGTGTCGCTAACGGTGACAGGTGAGTGCATCTGCTTCTGGGCTCCACTGTATGTGTGTCTGCCGTGATGATGGCAGCTACAAAAAAAAACAAAAAAAAAAAACCAAGAGTAGATGGGCACTCAAATCGCTGGCAACCCTTTCGCAAACACAGCTCCTTTGACGGCGCACCTGCAGCCACAGGTGCAGACGGTGGATGTCGAT
**************************************************.(((((((((((((((.(((((......))...((((.(((((((....))))))).)))).....................))).))))))))..)))))))........((.........))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR902008
ovaries
 GSM343915
embryo
................................................................................................................AAAAAAACAAAAAAAAAAAA.................................................................................................... 20 0 20 0.25 5 5 0 0 0 0 0
......................................................GGGCATCTGCCTGTGGGCTCC............................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0 0
................................................................................................................AAAAAAACAAAAAAAA........................................................................................................ 16 0 20 0.25 5 5 0 0 0 0 0
...............................................................................................................AAAAAAAACAAAAAAAA........................................................................................................ 17 0 20 0.20 4 3 1 0 0 0 0
.................................................................................................................AAAAAACAAAAAAAAAA...................................................................................................... 17 0 20 0.15 3 3 0 0 0 0 0
...................................................TGAGTGCAGCTGCTTGTGGGA................................................................................................................................................................ 21 3 7 0.14 1 0 1 0 0 0 0
...................................................TGAGATCATCTGCTTCTG................................................................................................................................................................... 18 2 10 0.10 1 0 1 0 0 0 0
...............................................................................................................AAAAAAAACAAAAAAAAAA...................................................................................................... 19 0 20 0.10 2 0 0 0 1 1 0
..............................................................................................................AAAAAAAAACAAAAAAAAAAA..................................................................................................... 21 0 20 0.10 2 1 0 0 0 1 0
........................................................................................................................................................................................................................GAGGGTGGATGTCGA. 15 1 15 0.07 1 0 1 0 0 0 0
......................................................................................................................................................................CCTTTCGCAAATCCGGCTCC.............................................. 20 3 16 0.06 1 0 0 0 1 0 0
...............................................................................................................AAAAAAAACAAAAAAAAAAAACCAAAAAAAGA......................................................................................... 32 3 20 0.05 1 0 0 0 0 0 1
.................................................................................................................AAAAAACAAAAAAAAAAA..................................................................................................... 18 0 20 0.05 1 0 0 0 1 0 0
............................................................................................................ACAAATAAAAACAAAAAAA......................................................................................................... 19 1 20 0.05 1 1 0 0 0 0 0
................................................................................................................AAAAAAACAAAAAAAAAAA..................................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

CTTGTTATGCCGACCGCTCCTCTGGTAGGTTCACAGCGATTGCCACTGTCCACTCACGTAGACGAAGACCCGAGGTGACATACACACAGACGGCACTACTACCGTCGATGTTTTTTTTTGTTTTTTTTTTTTGGTTCTCATCTACCCGTGAGTTTAGCGACCGTTGGGAAAGCGTTTGTGTCGAGGAAACTGCCGCGTGGACGTCGGTGTCCACGTCTGCCACCTACAGCTA
**************************************************.(((((((((((((((.(((((......))...((((.(((((((....))))))).)))).....................))).))))))))..)))))))........((.........))........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 SRR902008
ovaries
..................................................................................................................TTTTTGTTTTTTTTTTGGGGTTCT.............................................................................................. 24 2 4 0.50 2 0 0 1 0 1 0
............................................................................................................................................................................CGTTTATGTCGAGGATACT......................................... 19 2 5 0.40 2 2 0 0 0 0 0
........GGCGACCGCTCTTCTGGTA............................................................................................................................................................................................................. 19 2 3 0.33 1 0 1 0 0 0 0
.....................................................................................................CCGTCGATGTTTTTTTTTC................................................................................................................ 19 1 3 0.33 1 1 0 0 0 0 0
................................................................................................................TTTTTTTGTTTTTTTTTTGGGGTTCT.............................................................................................. 26 2 3 0.33 1 0 0 0 1 0 0
....................................................................................................ACCGTCGAGGTTTTTTTGTG................................................................................................................ 20 2 5 0.20 1 0 1 0 0 0 0
..........................................................................................................GATGCTGTATTTTGTTTTTTTTTTT..................................................................................................... 25 3 6 0.17 1 0 0 0 0 0 1
.............................................................................................................................................................................GTCTGTGTCGAGGAAGCTCC....................................... 20 3 8 0.13 1 0 0 1 0 0 0
.......................................................................................AGACGACACTACTACC................................................................................................................................. 16 1 8 0.13 1 0 1 0 0 0 0
....................................................................................................................................................................................................GTGGGGGTCGGTGTCCA................... 17 2 20 0.05 1 0 0 1 0 0 0

Generated: 04/24/2015 at 10:42 AM