ID:

dsi_25373

 Coordinate:

3r:22559456-22559588 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-22.4 -22.2 -22.0

Flybase annnotation

CDS [3r_22559122_22559418_-]; five_prime_UTR [3r_22559419_22559455_-]; exon [3r_22559589_22559652_-]; five_prime_UTR [3r_22559589_22559652_-]; exon [3r_22558995_22559455_-]; intron [3r_22559456_22559588_-]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------##################################################
AACAGGCTGCTAGCCGTTAAAAATAACTAACGACCAAGAAATAGCACAAGGTAAGCGAAAAGGGGGAGTTTAATTCAGTAAAATATGTGGGGCAAATGCCTTTGCCAAGAATTTTAGTCATTTTTATGCGGCGATCACGCTCTGACATCGTGGACTAATGCTCAGTTCCGGTTTTGATTTCAGAACTCCCCCCCAAGAAAAACCCAATCACTTGAAGAAGATGGCCACCGCAT
**************************************************....(((.(((((..((....(((((.((((........((((....))))))))...)))))....)).))))).)))((((....))))((((.((((((((((.......)).))))....)))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
.............................................ACAAGGTAAGCGAAAAGG.......................................................................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.......................................................................................................................................................................................................AAACCCAATCACTTGAAGAA.............. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0
..........................CTAACGACCAAGAAATAGCAC.......................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...................................................................................................................................CGATCACGCTCTGACATCGTG................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................CAAGAAAAACCCAATCACTTG................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0
....................................................................................................................................GATCACGCTTTGACATCGTGGA............................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................AGAACTCCCCCCCAAGAA.................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................ATCACTTGAAGAAGATGG......... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................CATCGTGGACTAATGCTCAGT................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................................................................................................................................CTCTGACCTCGTGGA............................................................................... 15 1 8 0.13 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................AGCACGGTCGGACATCGT.................................................................................. 18 3 20 0.10 2 0 0 0 0 0 0 0 1 1
................................................................................................................................CAATGATCACGCTCTGACA...................................................................................... 19 3 11 0.09 1 0 0 1 0 0 0 0 0 0
......................................................................................................................................TTACGGTCGGACATCGTG................................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
...............................................................GGGAGTTTAGCTCAGT.......................................................................................................................................................... 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

TTGTCCGACGATCGGCAATTTTTATTGATTGCTGGTTCTTTATCGTGTTCCATTCGCTTTTCCCCCTCAAATTAAGTCATTTTATACACCCCGTTTACGGAAACGGTTCTTAAAATCAGTAAAAATACGCCGCTAGTGCGAGACTGTAGCACCTGATTACGAGTCAAGGCCAAAACTAAAGTCTTGAGGGGGGGTTCTTTTTGGGTTAGTGAACTTCTTCTACCGGTGGCGTA
**************************************************....(((.(((((..((....(((((.((((........((((....))))))))...)))))....)).))))).)))((((....))))((((.((((((((((.......)).))))....)))).))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR618934
dsim w501 ovaries
 SRR902008
ovaries
 SRR902009
testis
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M023
head
........................................................................................................................................................CTGATTACGAGTCAAGGCCAAAACTA....................................................... 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0
......................................................CGCTTTTCCCCCTCAAATTAAG............................................................................................................................................................. 22 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0
.........................................................................................................................................GCGAGACTGTAGCACCTGATT........................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................TACGGAAACGGTTCTTAAAAT..................................................................................................................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................CCTGGTTACGAGTCGAGGCCGA............................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0
...............CAATTTTTATTGATTGCTGGTTCTT................................................................................................................................................................................................. 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..................................................................................................................................CGCTAGTGCGAGACTGTAGCACCTGAT............................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
...............................................................................................................................................CTGTAGCACCTGATTACGAGTCAAGGCCA............................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................TTACGAGTCAAGGCCAAAACTAAAGT................................................... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................GGTTCTTTTTGGGTTAG........................ 17 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
.....................TTATTGATTGCTGGTTCTTTAT.............................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
....................TTTATTGATTGCTGGTTCTTT................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................................TCAAGGCCAAAACTAAAGTCTT................................................ 22 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................................GGTTAGTGAACTTCTTCT............ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................AGTGAACTTCTTCTACCGGTG..... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................CTGTAGCACCTGATTACGAGTCAAGGCC.............................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................................................................................................................ATGCGCCGATAGTGCGAG........................................................................................... 18 2 1 1.00 1 0 0 0 0 0 0 0 1 0 0
........................TCGACTGCTGGTTCTTTGTCGT........................................................................................................................................................................................... 22 3 3 0.33 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................TGGCACGTGATTACGAGT..................................................................... 18 2 4 0.25 1 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................GGGTTAGTGAACTACTCC............. 18 2 7 0.14 1 0 0 0 0 0 0 0 0 0 1
......................................................................................................................................CGTGCGAGACTCTAGCACGT............................................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................AGTGAAGGCCCAAACTAAT..................................................... 19 3 16 0.13 2 0 0 0 0 0 2 0 0 0 0
.................................................................................................................................................................................AAAGTCTTGAGGGGTGTTT..................................... 19 2 11 0.09 1 0 0 0 0 0 1 0 0 0 0
...............................................................................................................................................................CGAGTCATGCCCAAAATTA....................................................... 19 3 16 0.06 1 0 0 0 0 0 0 1 0 0 0
......................................................................................................ACGGGTGTTAATATCAGTAA............................................................................................................... 20 3 16 0.06 1 0 0 0 0 0 1 0 0 0 0
........................................................................................................................AAAAATACGTGGCTAGTGT.............................................................................................. 19 3 20 0.05 1 0 0 1 0 0 0 0 0 0 0
..........................GGCTGCTGGTTCTTTGTCGT........................................................................................................................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
.................................GGTTCTTTTTCGTGT......................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:22559406-22559638 - dsi_25373 AACAGGCTG-CT-AGCCGTTAAAA-ATA-----------------------------ACTA-----A---CGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGC-GAAAAGGG--G------------------------GAGTTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------TTGCCAAGA----A----------TTTTAGTCAT-----------TTTTATG---------CGGC---GATCACGCTCTGACATCGTGG-----------------------ACTAATGCTCAG-TTCCGGTTTT-GATTTCAGAA-------CTCC--------CCCCCAAGAAA---AACCCAATCA-CTT--GAAGAAGATG------------GCCACCGCAT
droSec2 scaffold_13:1871828-1872059 - AACAGGCTG-CT-AGCCGTTAAAA-ATA-----------------------------ACTA-----A---TGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGC-GAAAAGGG--A------------------------GAGTTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------GTGCCAAGA----A----------TTTTAGTCAT-----------TTTTATG---------CGGC---GATCACGCTCTGACATCGTGG-----------------------ACTAATGCTCAG-TTCCGGTTTT-GATTTCAGAA-------CTCC--------CC-CCAAGAAA---AACCCAATCA-CTT--GAAGAAGATG------------GCCACCGCAT
dm3 chr3R:23117666-23117897 - AACAGGCTG-CT-AGCCGTTAAAA-ATA-----------------------------ACTA-----A---CGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGC-GAAAAGGG--A------------------------GAGTTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------TTGCCAAGA----A----------TTATAGTAA------------ATTTATG---------CGAC---GATCACGCTCTGACATCGTGG-----------------------ACTAATGCCCAG-TTCCGGTTTT-GATTTCAGAA-------TTCC-----------CCAAAAAACCGAACCCAATCA-CTT--GAACAAAATG------------CCTACCGCAT
droEre2 scaffold_4820:4915846-4916058 + AACAGGCT-----AGCCGTTAAAA-ATA-----------------------------ACTA-----A---CAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GGAAAGGG--A------------------------GA----------ATA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC------------------------------------------------------------TTGCCAAGA----A----------TTATTGTAA------------ATTTATG---------CCGT---GATCATGCCTTGACATCGTGG-----------------------ACTAATGCCCAG-TTCCGGTTTT-GATTTCAGAA-------CTTT--------GT-CCG----A---AACCAAATCA-ATT--GAAGAAAATG------------CCGACCGCAT
droYak3 3R:23375375-23375617 + AACAGGCTG-CT-AGACGTTAAAA-ATA-----------------------------ACTA-----A---CCACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GAAAAGGG--AAA----------------------AAATTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC------------------------------------------------------------GCGCCAAGA----A----------TTATAGTAA------------ATTTATG---------CGAC---GATCATGCCTTGACATCGTGG-----------------------TCTAATGCTCAG-TTCCGGTTTTTGATTTCAGAA-------CTCG-----------CCAAAAAA---AACCCAATCA-ATT--GAAGAAGATGGCCACCGCAACCGCAACCGCAT
droEug1 scf7180000409770:587808-588028 - AACAGGCTG-CT-GGTCGTTAAGC-AAA--------------------------------------AAGACAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGG-CAAAAGGG--A-------------------------AATTCAATTCATTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC------------------------------------------------------------TCGCCAAGA----T----------ATATAGAAA------------ACTTATG---------CGCC---GATCACGCTCGTTCATCGTGG-----------------------ACTAATACCCAG-TTCCGGTTTC-GCTTTCAGAACTCACAATCCCAAA-A------------------------TCT-ATT--GAAG-AAATG------------GCTACCGCAT
droBia1 scf7180000302075:1831134-1831339 + AACAGGCTG-CT-AAGCGTGAG-----------------------------------------------ACAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GAAAAGGG--A-------------------------AACTCAATTCGGTA-AAATATGTGGGA---------------------------------------------C---AAA-GAGC------------------------------------------------------------TTGCCAAGA----A----------ATATAGCGG------------ATTTATG---------CGCC---GATCACGCACTGTCATCGTGG-----------------------ACTAACACCCGG-TTCCGGTTTC-GTTTTTAGAA-------CTCCCCA-A------------------------TCC-ACC--GAAG-AAATG------------GCCACCGCAT
droTak1 scf7180000415700:504573-504749 - AACAGGCTG-CT-AGCCGTTAAAA-AT-----------------------------------------------CAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGGCGAAAAGGG--A------------------------AATTTCTATGCAGTAAAAATATGTGGGG---------------------------------------------C---A-------------------------------------------------------------------TTGCCAAGA----A----------ATATTG----------------------------------T---GATCACGCTCGGTAATCGTGG-----------------------ACTAATACCAAG-TTCCGGTTTC-GTTTTCAGAA-------CCC----------------------------------------AAA-AAATG------------GCCACCGCAT
droEle1 scf7180000491261:1589621-1589834 - AACAGGCTG-CT-AGCCGTTAAAA-AAA-----------------------------AA-------G--A-AACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGT-GAAAAGGG--A-------------------------AATTCAATTCAATG-AAATATCTGGGG---------------------------------------------C---AAG-ACAT------------------------------------------------------------TTGCCAAGA----A----------TTATAGTAA------------ATTTATG---------CGCT---GATCACGCTCAGCTATCGTGG-----------------------ACAAACACTTAC-CTCCGGTTTC-GTTTTCAGAA-------CTCCAAAGA------------------------CGC-AGA--GAAG-AAATG------------GCCACGGCAT
droRho1 scf7180000780007:27097-27308 + AACAGGCTG-CT-AGCCGTTAAAA-AAG-----------------------------------------ACATACAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGG-GAAAAGGG--A-------------------------AATTCAATTCACTA-AAATATGTGGGA---------------------------------------------C---AGA-TGTG------------------------------------------------------------TTGCCAAGA----A----------TTTTAGTAA------------ATTTATG---------CGCT---GATCACGCTCAGTCATCGTGG-----------------------ACTAACACTTAC-TTCCGGTCTT-GTTTTTAGAA-------CCCTAAT-A------------------------CCCATTT--GAAG-AAATG------------GCCACCGCAT
droFic1 scf7180000453826:597115-597337 + AACAGGCTG-CT-AACAGTTAAAA-AAAGAAAAGGA---------------------A----------GACAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GAAAAGGG--A-------------------------AATTCAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------GTGCCAAGA----A----------ATATAGTAAA-----------ATTTATG---------CGCC---GATCACGCTAAGCCAACGTGT-----------------------ACTAATGCCTGT-TTCCGGTTTG-TCTTTTAGAA-------CCCCTAA-A------------------------TCC-ATT--GAAG-AAATG------------GCCACCGCAT
droKik1 scf7180000302705:176006-176240 - AACAGGCTG-CT-AGCCGCAAAAA-AAAGC---------------------------ACTA-CAGA--GACGTCTACGA-------------------------------------------------------------------------------------------AA---TAG--CTC-AAGGTAAGA-GGAAAGGG--A-------------------------AATTTAATTCACAAAAAATATTTGGCA---------------------------------------------T---ACTTTGGC------------------------------------------------------------TTGCCAAGA----A----------ATATAGTAA------------ATTTATG---------TGTCGATGATCACGCTCAGTCAACGTGA-----------------------ACTAACCCCCAG-TTCCGGTTAC-GTTTGCAGAA-------TCCGAGACACG----TCGAAG-------------AA-ATC--ACAG-CAATG------------GCCACCGCAT
droAna3 scaffold_13340:19573528-19573764 + AACAGGCTG-CT-AGCTCAAA--GGG---------A---------------------AA-------AA---AACCAGAA--------------------------------------------------------------------------------------ACG--CA---CAT--CAC-AAGGTAAGC-GAAAGGAA--A-------------------------CATTCAATTCACAA-AAATATGTGGGC---------------------------------------------C---AAA-TGGC------------------------------------------------------------TTGCCAAAAAAAAA----------ATATAGTAA------------AGATATG--TGCTTTATGCT---GATCACGCACCGTCATCGTGG---ATGAA---------------ACTAATGCCCTG-TTCCGGTTTT-GTCTTTCTCTCGCAGAATACCAAC-G------------------------TCA-AGC--TACG-AAATG------------TCCACGGCAA
droBip1 scf7180000396413:2812363-2812599 - AACAGGCTG-CT-AGCCCAAA--GGG---------A---------------------AA-------AA---AACCAGAA--------------------------------------------------------------------------------------ACG--CA---AAT--CAC-AAGGTAAGC-AAAAGGAA--A-------------------------AATTCAATTCACAA-AAATATGTGGGC---------------------------------------------C---AAA-TGGC------------------------------------------------------------TTGCCAAAAAAAAA----------TAATAGTAA------------AAATAAG--TGCTTTATGCT---GATCACGCACCGTCATCGTGG---ATGAG---------------ACTAATGCCCTG-TTCCGGTTTT-GTCTTTCTATCGCAGAATACCAAC-G------------------------TCA-AGC--TAAG-AAATG------------GCCACAGCAA
dp5 2:8768457-8768712 - AACAGGCTG-TG-CGAAATCAAAA--------CGGGCCGAAACAGACGTGAGATTCTTCTAA----AAGA---CACAGA-------------------------------------------------------------------------------------------AA---AAACCCACAAAGGTGAGA-GAAATGGC--G-------------------------AAATTAATTCACAA-AAATATCTGGGG---------------------------------------------C---AAA-TACC----------------------------------------A-------------------TTGCCAAGG----C----------ACGTAGCCACCCACCAGATAGATATATGTATAATATCTAGA---GACCATGCCGATTCATCGTGA-----------------------ACTAATGTCGAGTTTCCGGTTTC-GCTTTTAGAT-------------------------------------------------ATAG-AAATGCCT------ACCGCCACTGCTG
droPer2 scaffold_0:2581242-2581493 - AACAGGCTG-TG-CGAAATCGAAA--------CGGGCCGAAACAGACGTGAGATTCTTCTAA----AAGA---CACAGA-------------------------------------------------------------------------------------------AA---AAACCCACAAAGGTGAGA-GAAATGGG--G-------------------------AAATTAATTCACAA-AAATATCTGGGG---------------------------------------------C---AAA-TACC----------------------------------------A-------------------TTGCCAAGG----C----------ACGTAGCCACCCACCAGATAGATATA----TAATATCTAGA---GACCATGCCGATTCATCGTGA-----------------------ACTAATGTCGAGTTTCCGGTTTC-GCTTTTAGAT-------------------------------------------------ATAG-AAATGCCT------ACCGCCACCGCTG
droWil2 scf2_1100000004902:3342133-3342340 - ACCAGAATA-AC----TAATAG---------------------------------------------------------------------------------------------------------ACAATA--ATTCTATCTACCAACGGA-----------------AA---TTT--TTC-AAATC-------AATTTG--A--ATTTCAAAGAAGAAAAAAAGGTAA----------GGG-AAATATTTCAAG---------------------------------------------A---AAA-TATT----------------------------------------C-------------------T------------------------------------------------------------TAAA---AACTAGGCCAAACCATTTTGTGTGATGAAATTGTATCACTAAATATGA------AC-TTCCGGTTTC-T---GCAGAT---------------------------------------------AA--TACA-AAATGCCT------ACCGCCGCCGCTG
droVir3 scaffold_13047:17619268-17619489 - TACATATTT-CC--GTTGTCAGGG-GAA-----------------------------ATTC-----C---GAGGCAACA-------------------------------------------------------------------------------------------AATCCTAT--TTA-GAGGTAAGC-ACAGAGACTTTCT----------------------AAATTTAATGCACAC-AAAAATGTGGCACCCAGGCAGCGAAATATTTGTACATTTCAATATTAAAATTATTTTCTACAAA-TGTT----------------------------------------TTTACACCACTTT---------------------------------TTA--GAAAAACCAAATAAATATATATAT----------------------------------------------------------------------------------------------------------ATA----------------------TATATAT--AAAA-AAATG------------GCCACTGCC-
droMoj3 scaffold_6540:14063971-14064213 + GGCAGGAGAGAA-ATCCGCAAAAA-AAT-A---------------------------AATA-TATA--TACATATAT--------------------------------------------------ACATTAAACATCTGTTTGCCAACGGAAGCTGAGCGACTATACGAA---TCC--CAA-GAGGTAAGC-ACAAAGTG--TCT----------------------AAATTTAATGCGCCC-AG---------------GCATCTAAATATTTAAA----------------G------C---ATA-TACT----------------------------------------T-------------------AACG---------------------------CA------------TTATATG---------CAGC---G---------TGACAT-GTAG---AAAAA-------------------ATTGTAA-----CACTTCC-G-TTTCACAT---------------ATTTG------------------------TTCGCAGAA-ATATG------------GCCACTGCT-
droGri2 scaffold_15074:6981097-6981395 + AAAATTCCT-TGTGGTTGCCAAGG-GGA-----------------------------ACTC-----A---AAAACAGCACATCAAATTAACGCAAACACATCGGGGTAAGAATATATACACTATACGACAATA--AG-------------------------------------------------------------------------------------------------------------ACTATGT---G---------------------------------------------C---ATTTTGGCTTACAAGTTAATTGTCAATATATGTTAATATATATAGCTCGATACACAGCTGGGAAAAAGGTGCCAAAA----ATTGCATATGCATATAGCTA------------AT--ATT---------CG--------------AGAATATTGTTT-----TAAATTATTTAGCTAAA-GATAATGTTGAT-TTTCGCTTCC-GATTTTACAG-------C---AAA-A------------------------CCT-ACC--AAAA-AAATG------------GCTACTTCA-

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AACAGGCTG-CT-AGCCGTTAAAA-ATA-----------------------------ACTA-----A---CGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGC-GAAAAGGG--G------------------------GAGTTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------TTGCCAAGA----A----------TTTTAGTCAT-----------TTTTATG---------CGGC---GATCACGCTCTGACATCGTGG-----------------------ACTAATGCTCAG-TTCCGGTTTT-GATTTCAGAA-------CTCC--------CCCCCAAGAAA---AACCCAATCA-CTT--GAAGAAGATG------------GCCACCGCATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.....................................................................................................................................................................................AC-AAGGTAAGC-GAAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---AACCCAATCA-CTT--GAAGAA..........................2011.00100000000001000000
..........................................................CTA-----A---CGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GATCACGCTCTGACATCGTG...........................................................................................................................................2111.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAAA---AACCCAATCA-CTT--G...............................2111.00100000100000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAA-------CTCC--------CCCCCAAGAA....................................................1811.00100010000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA-CTT--GAAGAAGATG------------G.........1811.00100001000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCGTGG-----------------------ACTAATGCTCAG-T.....................................................................................................2111.00100000010000000000
droSec2
AACAGGCTG-CT-AGCCGTTAAAA-ATA-----------------------------ACTA-----A---TGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGC-GAAAAGGG--A------------------------GAGTTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------GTGCCAAGA----A----------TTTTAGTCAT-----------TTTTATG---------CGGC---GATCACGCTCTGACATCGTGG-----------------------ACTAATGCTCAG-TTCCGGTTTT-GATTTCAGAA-------CTCC--------CC-CCAAGAAA---AACCCAATCA-CTT--GAAGAAGATG------------GCCACCGCATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACATCGTGG-----------------------ACTAATGC...........................................................................................................2113.0030201
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCA-CTT--GAAGAAGATG------------GCCAC.....2111.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTT--GAAGAAGATG------------GCCACCGC..2111.0010010
............................................................A-----A---TGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAG..............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-CTT--GAAGAAGATG------------GCC.......1811.0010010
....................................................................................................................................................................................CAC-AAGGTAAGC-GAAAAGGG--A------------------------....................................................................................................................................................................................................................................................................................................................................................................................2111.0010100
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCA-CTT--GAAGAAGATG------------G.........1911.0010010
...........................A-----------------------------ACTA-----A---TGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
.........................................................................................................................................................................................AGGTAAGC-GAAAAGGG--A------------------------G...................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..............................................................................................................................................................................................AGC-GAAAAGGG--A------------------------GAGTTTAATT..........................................................................................................................................................................................................................................................................................................................................................................2211.0010001
.................................................................................................................................................................................G--CAC-AAGGTAAGC-GAAAAGGG--A------------------------GAG.................................................................................................................................................................................................................................................................................................................................................................................2511.0011000
dm3
AACAGGCTG-CT-AGCCGTTAAAA-ATA-----------------------------ACTA-----A---CGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGC-GAAAAGGG--A------------------------GAGTTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------TTGCCAAGA----A----------TTATAGTAA------------ATTTATG---------CGAC---GATCACGCTCTGACATCGTGG-----------------------ACTAATGCCCAG-TTCCGGTTTT-GATTTCAGAA-------TTCC-----------CCAAAAAACCGAACCCAATCA-CTT--GAACAAAATG------------CCTACCGCATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACATCGTGG-----------------------ACTAATGC...........................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
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.....................................................................................................................................................................................................................................................................................................................................................................................................................................TTATG---------CGAC---GATCACGCTCTGATC................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAG-TTCCGGTTTT-GATTTC.....................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GAC---GATCACGCTCTGACATCGTGG-----------------------AC.................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAG-TTCCGGTTTT-GATTTCAG...................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-----------CCAAAAAACCGAACCC...........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCTCTGACATCGTGG-----------------------A..................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAG-TTCCGGTTTT-GATTTCAG...................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGACATCGTGG-----------------------ACTAATGCATC........................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................CAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAG.........................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
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.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAG-TTCCGGTTTT-GATTT......................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGACATCGTGG-----------------------ACTAA..............................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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..................................................................................................................................................................................................................................................................................................................................................................................................................AGTAA------------ATTTATG---------CGAC---GATCAC.........................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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....................................................................................................................................................................................CAC-AAGGTAAGC-GAAAAGGG--.............................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
......................................................................CGACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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.........................................................................................................................................................................................AGGTAAGC-GAAAAGGG--A------------------------GAG.................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
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...........................................................................................................................................................................................GTAAGC-GAAAAGGG--A------------------------GAGT................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
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..................................................................................................................................................................................................GAAAAGGG--A------------------------GAGTTTAAT...........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
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..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCCAG-TTCCGGTTTT-GATTTC.....................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................AC-AAGGTAAGC-GAAAAGGG--A------------------------GA..................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................TTATAGTAA------------ATTTATG---------CGAC---G..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATA-----------------------------ACTA-----A---CGACCAAGA-------------------------------------------------------------------------------------------AA---TA........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACATCGTGG-----------------------ACTAATGCATC........................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AACAGGCT-----AGCCGTTAAAA-ATA-----------------------------ACTA-----A---CAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GGAAAGGG--A------------------------GA----------ATA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC------------------------------------------------------------TTGCCAAGA----A----------TTATTGTAA------------ATTTATG---------CCGT---GATCATGCCTTGACATCGTGG-----------------------ACTAATGCCCAG-TTCCGGTTTT-GATTTCAGAA-------CTTT--------GT-CCG----A---AACCAAATCA-ATT--GAAGAAAATG------------CCGACCGCATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................ATG---------CCGT---GATCATGCCTTGACATCGTGG-----------------------AC.................................................................................................................30116.001600000016
.............................................................................GA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-.......................................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCA-ATT--GAAGAAAATG------------C.........2111.0010100000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTT--------GT-CCG----A---AACCAAATCA-AT...................................2211.0010001000
droYak3
AACAGGCTG-CT-AGACGTTAAAA-ATA-----------------------------ACTA-----A---CCACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GAAAAGGG--AAA----------------------AAATTTAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC------------------------------------------------------------GCGCCAAGA----A----------TTATAGTAA------------ATTTATG---------CGAC---GATCATGCCTTGACATCGTGG-----------------------TCTAATGCTCAG-TTCCGGTTTTTGATTTCAGAA-------CTCG-----------CCAAAAAA---AACCCAATCA-ATT--GAAGAAGATGGCCACCGCAACCGCAACCGCATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-ATT--GAAGAAGATGGCCACC................2011.00100100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCA-ATT--GAAGAAGATGGCCACCG...............2511.00100000010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCACCGCAACCGCAACCGC..2011.00101000000000
...................TAAAA-ATA-----------------------------ACTA-----A---CCACCAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCAG-TTCCGGTTTTTGATTTCAG...................................................................................2611.00101000000000
.............................................................................GA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GAAAAGG................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
..........................................................CTA-----A---CCACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CA...................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCAG-TTCCGGTTTTTGATTTCAG...................................................................................2411.00110000000000
AACAGGCTG-CT-AGACGTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
....................AAAA-ATA-----------------------------ACTA-----A---CCACCAAGA-------------------------------------------------------------------------------------------AA---TAG--C....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATGGCCACCGCAACCGC........2111.00100100000000
.................GTTAAAA-ATA-----------------------------ACTA-----A---CCACCAAGA-------------------------------------------------------------------------------------------AA---TA........................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCACCGCAACCGCAACCGCA.2211.00101000000000
.......................................................................................................................................................................................................................................................ATATGTGGGG---------------------------------------------C---AAA-TGCC------------------------------------------------------------...................................................................................................................................................................................................................................1811.00110000000000
droEug1
AACAGGCTG-CT-GGTCGTTAAGC-AAA--------------------------------------AAGACAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGG-CAAAAGGG--A-------------------------AATTCAATTCATTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC------------------------------------------------------------TCGCCAAGA----T----------ATATAGAAA------------ACTTATG---------CGCC---GATCACGCTCGTTCATCGTGG-----------------------ACTAATACCCAG-TTCCGGTTTC-GCTTTCAGAACTCACAATCCCAAA-A------------------------TCT-ATT--GAAG-AAATG------------GCTACCGCATSizeHit CountTotal NormTotal
No Reads
droBia1
AACAGGCTG-CT-AAGCGTGAG-----------------------------------------------ACAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GAAAAGGG--A-------------------------AACTCAATTCGGTA-AAATATGTGGGA---------------------------------------------C---AAA-GAGC------------------------------------------------------------TTGCCAAGA----A----------ATATAGCGG------------ATTTATG---------CGCC---GATCACGCACTGTCATCGTGG-----------------------ACTAACACCCGG-TTCCGGTTTC-GTTTTTAGAA-------CTCCCCA-A------------------------TCC-ACC--GAAG-AAATG------------GCCACCGCATSizeHit CountTotal NormTotal
No Reads
droTak1
AACAGGCTG-CT-AGCCGTTAAAA-AT-----------------------------------------------CAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGGCGAAAAGGG--A------------------------AATTTCTATGCAGTAAAAATATGTGGGG---------------------------------------------C---A-------------------------------------------------------------------TTGCCAAGA----A----------ATATTG----------------------------------T---GATCACGCTCGGTAATCGTGG-----------------------ACTAATACCAAG-TTCCGGTTTC-GTTTTCAGAA-------CCC----------------------------------------AAA-AAATG------------GCCACCGCATSizeHit CountTotal NormTotal
No Reads
droEle1
AACAGGCTG-CT-AGCCGTTAAAA-AAA-----------------------------AA-------G--A-AACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGT-GAAAAGGG--A-------------------------AATTCAATTCAATG-AAATATCTGGGG---------------------------------------------C---AAG-ACAT------------------------------------------------------------TTGCCAAGA----A----------TTATAGTAA------------ATTTATG---------CGCT---GATCACGCTCAGCTATCGTGG-----------------------ACAAACACTTAC-CTCCGGTTTC-GTTTTCAGAA-------CTCCAAAGA------------------------CGC-AGA--GAAG-AAATG------------GCCACGGCATSizeHit CountTotal NormTotal
No Reads
droRho1
AACAGGCTG-CT-AGCCGTTAAAA-AAG-----------------------------------------ACATACAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGG-GAAAAGGG--A-------------------------AATTCAATTCACTA-AAATATGTGGGA---------------------------------------------C---AGA-TGTG------------------------------------------------------------TTGCCAAGA----A----------TTTTAGTAA------------ATTTATG---------CGCT---GATCACGCTCAGTCATCGTGG-----------------------ACTAACACTTAC-TTCCGGTCTT-GTTTTTAGAA-------CCCTAAT-A------------------------CCCATTT--GAAG-AAATG------------GCCACCGCATSizeHit CountTotal NormTotal
No Reads
droFic1
AACAGGCTG-CT-AACAGTTAAAA-AAAGAAAAGGA---------------------A----------GACAACCAAGA-------------------------------------------------------------------------------------------AA---TAG--CAC-AAGGTAAGA-GAAAAGGG--A-------------------------AATTCAATTCAGTA-AAATATGTGGGG---------------------------------------------C---AAA-TGCC----------------------------------------T-------------------GTGCCAAGA----A----------ATATAGTAAA-----------ATTTATG---------CGCC---GATCACGCTAAGCCAACGTGT-----------------------ACTAATGCCTGT-TTCCGGTTTG-TCTTTTAGAA-------CCCCTAA-A------------------------TCC-ATT--GAAG-AAATG------------GCCACCGCATSizeHit CountTotal NormTotal
No Reads
droKik1
AACAGGCTG-CT-AGCCGCAAAAA-AAAGC---------------------------ACTA-CAGA--GACGTCTACGA-------------------------------------------------------------------------------------------AA---TAG--CTC-AAGGTAAGA-GGAAAGGG--A-------------------------AATTTAATTCACAAAAAATATTTGGCA---------------------------------------------T---ACTTTGGC------------------------------------------------------------TTGCCAAGA----A----------ATATAGTAA------------ATTTATG---------TGTCGATGATCACGCTCAGTCAACGTGA-----------------------ACTAACCCCCAG-TTCCGGTTAC-GTTTGCAGAA-------TCCGAGACACG----TCGAAG-------------AA-ATC--ACAG-CAATG------------GCCACCGCATSizeHit CountTotal NormTotal
No Reads
droAna3
AACAGGCTG-CT-AGCTCAAA--GGG---------A---------------------AA-------AA---AACCAGAA--------------------------------------------------------------------------------------ACG--CA---CAT--CAC-AAGGTAAGC-GAAAGGAA--A-------------------------CATTCAATTCACAA-AAATATGTGGGC---------------------------------------------C---AAA-TGGC------------------------------------------------------------TTGCCAAAAAAAAA----------ATATAGTAA------------AGATATG--TGCTTTATGCT---GATCACGCACCGTCATCGTGG---ATGAA---------------ACTAATGCCCTG-TTCCGGTTTT-GTCTTTCTCTCGCAGAATACCAAC-G------------------------TCA-AGC--TACG-AAATG------------TCCACGGCAASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACCAAC-G------------------------TCA-AGC--TACG-AA.........................2111.001000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AGC--TACG-AAATG------------TCCACGGC..2111.001010000
.ACAGGCTG-CT-AGCTCAAA--GGG---------A---------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000010
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTTATGCT---GATCACGCACCGTC.................................................................................................................................................2411.001010000
...AGGCTG-CT-AGCTCAAA--GGG---------A---------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-G------------------------TCA-AGC--TACG-AAATG------------TCCACGGC..2711.001100000
.ACAGGCTG-CT-AGCTCAAA--GGG---------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
AACAGGCTG-CT-AGCTCAAA--GG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATACCAAC-G------------------------TCA-AGC--................................1811.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTCGCAGAATACCAAC-G------------------------TCA-AGC--TAC.............................2811.001010000
droBip1
AACAGGCTG-CT-AGCCCAAA--GGG---------A---------------------AA-------AA---AACCAGAA--------------------------------------------------------------------------------------ACG--CA---AAT--CAC-AAGGTAAGC-AAAAGGAA--A-------------------------AATTCAATTCACAA-AAATATGTGGGC---------------------------------------------C---AAA-TGGC------------------------------------------------------------TTGCCAAAAAAAAA----------TAATAGTAA------------AAATAAG--TGCTTTATGCT---GATCACGCACCGTCATCGTGG---ATGAG---------------ACTAATGCCCTG-TTCCGGTTTT-GTCTTTCTATCGCAGAATACCAAC-G------------------------TCA-AGC--TAAG-AAATG------------GCCACAGCAASizeHit CountTotal NormTotal
No Reads
dp5
AACAGGCTG-TG-CGAAATCAAAA--------CGGGCCGAAACAGACGTGAGATTCTTCTAA----AAGA---CACAGA-------------------------------------------------------------------------------------------AA---AAACCCACAAAGGTGAGA-GAAATGGC--G-------------------------AAATTAATTCACAA-AAATATCTGGGG---------------------------------------------C---AAA-TACC----------------------------------------A-------------------TTGCCAAGG----C----------ACGTAGCCACCCACCAGATAGATATATGTATAATATCTAGA---GACCATGCCGATTCATCGTGA-----------------------ACTAATGTCGAGTTTCCGGTTTC-GCTTTTAGAT-------------------------------------------------ATAG-AAATGCCT------ACCGCCACTGCTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................AACAGACGTGAGATTCTTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100000
...................CAAAA--------CGGGCCGAAACAGACGTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
.......................A--------CGGGCCGAAACAGACGTGAGATTCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
............................................GACGTGAGATTCTTCTAA----AAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAATGTCGAGTTTCCGGTTT.............................................................................................2011.0010100000000
....................AAAA--------CGGGCCGAAACAGACGTGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................TCAAAA--------CGGGCCGAAACAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
...................CAAAA--------CGGGCCGAAACAGACGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
AACAGGCTG-TG-CGAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAG-AAATGCCT------ACCGCCACTGCTG2511.0010100000000
.....................................CGAAACAGACGTGAGATTCTTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...................................GCCGAAACAGACGTGAGATTCTTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AATATCTAGA---GACCATGCCGA....................................................................................................................................................2111.0010100000000
droPer2
AACAGGCTG-TG-CGAAATCGAAA--------CGGGCCGAAACAGACGTGAGATTCTTCTAA----AAGA---CACAGA-------------------------------------------------------------------------------------------AA---AAACCCACAAAGGTGAGA-GAAATGGG--G-------------------------AAATTAATTCACAA-AAATATCTGGGG---------------------------------------------C---AAA-TACC----------------------------------------A-------------------TTGCCAAGG----C----------ACGTAGCCACCCACCAGATAGATATA----TAATATCTAGA---GACCATGCCGATTCATCGTGA-----------------------ACTAATGTCGAGTTTCCGGTTTC-GCTTTTAGAT-------------------------------------------------ATAG-AAATGCCT------ACCGCCACCGCTGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
........G-TG-CGAAATCGAAA--------CGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19111.00111001000
........G-TG-CGAAATCGAAA--------CGGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2017.007600001
....................................................................................................................................................................................................................................................................................................................................................................................................................................TATA----TAATATCTAGA---GACC...........................................................................................................................................................1915.005500000
AACAGGCTG-TG-CGAAATCGAAA--------CGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2715.005401000
AACAGGCTG-TG-CGAAATC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1815.005500000
...............................................GTGAGATTCTTCTAA----AAGA---C...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2014.004400000
AACAGGCTG-TG-CGAAATCGAAA--------CG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2414.004400000
AACAGGCTG-TG-CGAAATCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003300000
........................................AACAGACGTGAGATTCTTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003102000
...........G-CGAAATCGAAA--------CGGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
AACAGGCTG-TG-CGAAATCGAAA--------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.003300000
...........G-CGAAATCGAAA--------CGGGCCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.002200000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ATA----TAATATCTAGA---GACCATGC.......................................................................................................................................................2211.001001000
...........................................................................CAGA-------------------------------------------------------------------------------------------AA---AAACCCACAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
................AATCGAAA--------CGGGCCGAAACAGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......................A--------CGGGCCGAAACAGACGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
......CTG-TG-CGAAATCGAAA--------CGGGCCGAAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
...........G-CGAAATCGAAA--------CGGGCCGAAACAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT-------------------------------------------------ATAG-AAATGCCT------ACCGCC.......2111.001001000
.......................................AAACAGACGTGAGATTCTTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000
...................CGAAA--------CGGGCCGAAACAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001100000
..................................GGCCGAAACAGACGTGAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
................AATCGAAA--------CGGGCCGAAACAGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
.......TG-TG-CGAAATCGAAA--------CGGGCCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001001000
........................................AACAGACGTGAGATTCTTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.ACAGGCTG-TG-CGAAATCGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
........G-TG-CGAAATCGAAA--------CGGGCCGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
..............GAAATCGAAA--------CGGGCCGAAACAGACG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001100000
AACAGGCTG-TG-CGAAATCGAAA--------CGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
..........TG-CGAAATCGAAA--------CGGGCCGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
..................................GGCCGAAACAGACGTGAGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
........................................AACAGACGTGAGATTCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000
.......TG-TG-CGAAATCGAAA--------CGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000
.....................................CGAAACAGACGTGAGATTC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
...AGGCTG-TG-CGAAATCGAAA--------CGGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AT-------------------------------------------------ATAG-AAATGCCT------ACCGC........1911.001001000
.......TG-TG-CGAAATCGAAA--------CGGGCC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
droWil2
ACCAGAATA-AC----TAATAG---------------------------------------------------------------------------------------------------------ACAATA--ATTCTATCTACCAACGGA-----------------AA---TTT--TTC-AAATC-------AATTTG--A--ATTTCAAAGAAGAAAAAAAGGTAA----------GGG-AAATATTTCAAG---------------------------------------------A---AAA-TATT----------------------------------------C-------------------T------------------------------------------------------------TAAA---AACTAGGCCAAACCATTTTGTGTGATGAAATTGTATCACTAAATATGA------AC-TTCCGGTTTC-T---GCAGAT---------------------------------------------AA--TACA-AAATGCCT------ACCGCCGCCGCTGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..................................................................................................................................ATA--ATTCTATCTACCAACGGA-----------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................2116.00601050
.....................G---------------------------------------------------------------------------------------------------------ACAATA--ATTCTATCTACCAACGGA-----------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................2515.00501040
..................................................................................................................................................CAACGGA-----------------AA---TTT--TTC-AAATC-------.....................................................................................................................................................................................................................................................................................................................................................................................................................2013.00301020
.....................G---------------------------------------------------------------------------------------------------------ACAATA--ATTCTATCTACCAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00302010
............................................................................................................................................ATCTACCAACGGA-----------------AA---TTT--TTC-A................................................................................................................................................................................................................................................................................................................................................................................................................................2213.00302010
.................................................................................................................................AATA--ATTCTATCTACCAACGGA-----------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2313.00300120
..............................................................................................................................................CTACCAACGGA-----------------AA---TTT--TTC-AA...............................................................................................................................................................................................................................................................................................................................................................................................................................2113.00301020
............................................................................................................................................ATCTACCAACGGA-----------------AA---TTT--TT...................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00200020
......ATA-AC----TAATAG---------------------------------------------------------------------------------------------------------ACAATA--ATTCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.00200020
....................................................................................................................................A--ATTCTATCTACCAACGGA-----------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200020
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAT---------------------------------------------AA--TACA-AAATGCCT------ACCGC........2211.00101000
....................................................................................................................................A--ATTCTATCTACCAACGGA-----------------AA---T.........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....AATA-AC----TAATAG---------------------------------------------------------------------------------------------------------ACAATA--ATT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..........................................................................................................................................CTATCTACCAACGGA-----------------AA---TTT--.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010
................................................................................................................................CAATA--ATTCTATCTACCAACGGA-----------------AA---T.........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00110000
.......................................................................................................................................ATTCTATCTACCAACGGA-----------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
............................................................................................................................................ATCTACCAACGGA-----------------AA---TTT--T....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
................................................................................................................................CAATA--ATTCTATCTACCAACGGA-----------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..........................................................................................................................................CTATCTACCAACGGA-----------------AA---TTT--TTC-A................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010
..................................................................................................................................................CAACGGA-----------------AA---TTT--TTC-AAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGGCCAAACCATTTTGTGT........................................................................................................................................2111.00100010
...........................................................................................................................................TATCTACCAACGGA-----------------AA---TTT--TTC-A................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAATATGA------AC-TTCCGGTTTC-T---GCAG...................................................................................2711.00101000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTAGGCCAAACCATTTTGTGTG.......................................................................................................................................2411.00100010
...........................................................................................................................................TATCTACCAACGGA-----------------AA---TTT--TT...................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
...................................................................................................................................................AACGGA-----------------AA---TTT--TTC-AAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
....................................................................................................................................A--ATTCTATCTACCAACGGA-----------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
......................................................................................................................................................................................................TTTG--A--ATTTCAAAGAAGAAAA..........................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
..............................................................................................................................................CTACCAACGGA-----------------AA---TTT--TTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.......................................................................................................................................ATTCTATCTACCAACGGA-----------------AA---T.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
..........................................................................................................................................................................................ATC-------AATTTG--A--ATTTCAAAGAAGAAA...........................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
..........................................................................................................................................CTATCTACCAACGGA-----------------AA---TTT--TTC-.................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100010
.........................................................................................................................................TCTATCTACCAACGGA-----------------AA---T.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
......ATA-AC----TAATAG---------------------------------------------------------------------------------------------------------ACAATA--ATTA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.................................................................................................................................................................................T--TTC-AAATC-------AATTTG--A--ATTTCAAAGAAGA.............................................................................................................................................................................................................................................................................................................................................................................................2911.00101000
....................................................................................................................................A--ATTCTATCTACCAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
............................................................................................................................................ATCTACCAACGGA-----------------AA---TTT--TTC-AAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
.................................................................................................................................AATA--ATTCTATCTACCAACGGA-----------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
....................................................................................................................................................................................................AATTTG--A--ATTTCAAAGAAGAAAAAAA.......................................................................................................................................................................................................................................................................................................................................................................................2611.00100010
..............................................................................................................................................CTACCAACGGA-----------------AA---TTT--TTC-A................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
...................................................................................................................................TA--ATTCTATCTACCAACGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
..........................................................................................................................................CTATCTACCAACGGA-----------------AA---TTT--TT...................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.....................G---------------------------------------------------------------------------------------------------------ACAATA--ATTCTATCTACCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000
..................................................................................................................................ATA--ATTCTATCTACCAACGGA-----------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.......................................................................................................................................ATTCTATCTACCAACGGA-----------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100010
droVir3
TACATATTT-CC--GTTGTCAGGG-GAA-----------------------------ATTC-----C---GAGGCAACA-------------------------------------------------------------------------------------------AATCCTAT--TTA-GAGGTAAGC-ACAGAGACTTTCT----------------------AAATTTAATGCACAC-AAAAATGTGGCACCCAGGCAGCGAAATATTTGTACATTTCAATATTAAAATTATTTTCTACAAA-TGTT----------------------------------------TTTACACCACTTT---------------------------------TTA--GAAAAACCAAATAAATATATATAT----------------------------------------------------------------------------------------------------------ATA----------------------TATATAT--AAAA-AAATG------------GCCACTGCC-SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...................CAGGG-GAA-----------------------------ATTC-----C---GAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003000000003000000000000000000000000000000000000000000000000000000
....................AGGG-GAA-----------------------------ATTC-----C---GAGGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2013.003000200000000000000000010000000000000000000000000000000000000000
............................................................................ACA-------------------------------------------------------------------------------------------AATCCTAT--TTA-GAGA.............................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
.................GTCAGGG-GAA-----------------------------ATTC-----C---GAGGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
........T-CC--GTTGTCAGGG-GAA-----------------------------ATTC-----C---GAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
.........................GAA-----------------------------ATTC-----C---GAGGCAACA-------------------------------------------------------------------------------------------AATCCTAT--T....................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000000000000000000000000000000000000000000000000000000000000
....................AGGG-GAA-----------------------------ATTC-----C---GAGGCAACA-------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000100000000000000000000000000000000000000000000000
................TGTCAGGG-GAA-----------------------------ATTC-----C---GAGGCAACA-------------------------------------------------------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000000000000000000010000000000000000000000000000000
.................GTCAGGG-GAA-----------------------------ATTC-----C---GAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000010000000000000000000000000000000000000000000000
........T-CC--GTTGTCAGGG-GAA-----------------------------ATTC-----C---GA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000010000000000000000000000000000000000000000
..CATATTT-CC--GTTGTCAGGG-GA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000010000000000000000000000000000000000000000
.................GTCAGGG-GAA-----------------------------ATTC-----C---GAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
...................CAGGG-GAA-----------------------------ATTC-----C---GAGGCAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
................TGTCAGGG-GAA-----------------------------ATTC-----C---GAGGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000010000000000000000000000000000000000000000000
..................TCAGGG-GAA-----------------------------ATTC-----C---GAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000001000
..........................................................................................................................................................................................................................................................TGTGGCACCCAGGCAGCGAAA..........................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000010000000000000000000000000000000000000000000
.....ATTT-CC--GTTGTCAGGG-GA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AATGCACAC-AAAAATGTGGC.........................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
.......TT-CC--GTTGTCAGGG-GAA-----------------------------ATTC-----C---GAGGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000100000000000000000000000000000000000000000000000000000000000
droMoj3
GGCAGGAGAGAA-ATCCGCAAAAA-AAT-A---------------------------AATA-TATA--TACATATAT--------------------------------------------------ACATTAAACATCTGTTTGCCAACGGAAGCTGAGCGACTATACGAA---TCC--CAA-GAGGTAAGC-ACAAAGTG--TCT----------------------AAATTTAATGCGCCC-AG---------------GCATCTAAATATTTAAA----------------G------C---ATA-TACT----------------------------------------T-------------------AACG---------------------------CA------------TTATATG---------CAGC---G---------TGACAT-GTAG---AAAAA-------------------ATTGTAA-----CACTTCC-G-TTTCACAT---------------ATTTG------------------------TTCGCAGAA-ATATG------------GCCACTGCT-SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-G-TTTCACAT---------------ATTTG------------------------TTCGCAG..............................2312.002200000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCC-G-TTTCACAT---------------ATTTG------------------------TTCGCAG..............................2711.001100000
...................................................................................................................................................AACGGAAGCTGAGCGACTATACGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
.................................................................................................................................................................GACTATACGAA---TCC--CAA-GAGAA............................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000
................................................................TA--TACATATAT--------------------------------------------------ACATTAAACATCTGTTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000001
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTCACAT---------------ATTTG------------------------TTCGCAG..............................2111.001100000
..................................................................................................................................................................................................................................................................................................................................................................T-------------------AACG---------------------------CA------------TTATATG---------CAGC---G---------TGACA................................................................................................................................................2411.001100000
................................................................................................................................................................CGACTATACGAA---TCC--CAA-GAG..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TTTCACAT---------------ATTTG------------------------TTCGC................................1911.001100000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAT---------------ATTTG------------------------TTCGCAG..............................1911.001100000
.........................................................................................................................................................................................................................................................................................................................................................................................G---------------------------CA------------TTATATG---------CAGC---G---------TGACAT-GTAG---.......................................................................................................................................2511.001100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CC-G-TTTCACAT---------------ATTTG------------------------TTCG.................................2011.001100000
..............................................................................................................................................TTGCCAACGGAAGCTGAGCGACTATAC................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
droGri2
AAAATTCCT-TGTGGTTGCCAAGG-GGA-----------------------------ACTC-----A---AAAACAGCACATCAAATTAACGCAAACACATCGGGGTAAGAATATATACACTATACGACAATA--AG-------------------------------------------------------------------------------------------------------------ACTATGT---G---------------------------------------------C---ATTTTGGCTTACAAGTTAATTGTCAATATATGTTAATATATATAGCTCGATACACAGCTGGGAAAAAGGTGCCAAAA----ATTGCATATGCATATAGCTA------------AT--ATT---------CG--------------AGAATATTGTTT-----TAAATTATTTAGCTAAA-GATAATGTTGAT-TTTCGCTTCC-GATTTTACAG-------C---AAA-A------------------------CCT-ACC--AAAA-AAATG------------GCTACTTCA-SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 06:11 PM