ID:

dsi_25365

 Coordinate:

2r:19346077-19346311 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-41.5 -41.4 -41.3

Flybase annnotation

three_prime_UTR [2r_19346076_19346076_+]; CDS [2r_19345185_19346075_+]; exon [2r_19346312_19346824_+]; three_prime_UTR [2r_19346312_19346824_+]; exon [2r_19345185_19346076_+]; intron [2r_19346077_19346311_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
GCAGCAGCCCGAGGATGAGCAGCTGGCGGCCAAAGAGACACAGATTTGAAGTAAGCCCAGCCGCAAGCCCGCTTTCGAAGCTCTCATCATCCCCGTGTTATGTTTCGCTCACCGCCGGGCGACTTCTGCTCCGCCTTTAACTTCCATGGCCCCCAATATGGCATCTATCTTTCTGTACAGTTGCGTTACTAACCCCCAGATTTAAGGATTTGCAGCATGTTGTTTTAGACGCTCCGATCAAAGTACAGACTCTAATCTTTGATCTACTTTTTTGATCTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGAGCAGCCG
**************************************************.......(((......((((((...((((((...(((.......)))....))))))......)).)))).....)))....(((............)))...((((((((((...(((((((((....((((......))))...))))....))))).)))..)))))))........((...((((((((...(((.((........)))))....))))))))....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 M024
male body
..........................................................................................................................................................................................................GAATGATTTGGAGCATGTTGT................................................................................................................ 21 3 4 10.25 41 35 0 5 0 1 0 0
...........................................................................................................................................................................................................AATGATTTGGAGCATGTTGTG............................................................................................................... 21 3 2 1.50 3 3 0 0 0 0 0 0
.......................................................................................................................................................................................................................................................................CTACTTTTTTGATCTATTGCA................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..................................GAGACACAGATTTGAAGACA......................................................................................................................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 1 0 0 0
.........................................................................................................................................................................................................TGAATGATTTGGAGCATGTTG................................................................................................................. 21 3 3 1.00 3 2 0 1 0 0 0 0
..........GTGGTTGAGCAGCTGGCGGCCA............................................................................................................................................................................................................................................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TTGAATGATTTGGAGCATGTTG................................................................................................................. 22 3 2 0.50 1 1 0 0 0 0 0 0
......GCCCGGGGTTGAGCAGCT....................................................................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................GAATGATTTGGAGCATGTTGTT............................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0
......GCCCTAGGTTGAGCAGC........................................................................................................................................................................................................................................................................................................................ 17 2 4 0.25 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................GATCTATTGGAGGGCA.............................................. 16 2 20 0.25 5 0 0 0 0 0 5 0
...................................................................................................................................................................................................................GCAGCATGTAGTGTTAGA.......................................................................................................... 18 2 4 0.25 1 0 0 0 0 1 0 0
....................................................................................................................................................................................................................CAACATGTTATTTTAGAC......................................................................................................... 18 2 6 0.17 1 0 0 0 0 0 0 1
................................................................................................................................................................................................................................................................................TGGTCTATTGCAGGA................................................ 15 1 6 0.17 1 0 0 0 0 1 0 0
................................................................................................................................................................................................................................................................................TGATCTATTGGAGGGCA.............................................. 17 2 7 0.14 1 0 0 0 0 0 1 0
........................................................................................................................GACTTCTGCTCCGACT....................................................................................................................................................................................................... 16 1 8 0.13 1 0 1 0 0 0 0 0
.........................................................................................................................................................................TTTCTCGACAGTTGCGTTA................................................................................................................................................... 19 2 18 0.11 2 0 0 1 0 1 0 0
....................................................................................................................................................................................................................CAGGATGTTGGTTTAGA.......................................................................................................... 17 2 16 0.06 1 0 0 0 0 1 0 0
........................................................................................................................................................................................GTTACTAACTCCCCGATC..................................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................................................................................................GATACTTACCCCCAGAT...................................................................................................................................... 17 2 20 0.05 1 0 0 0 0 1 0 0
..................................................................................................................................................................................................................................................................................................................AGCACCACCTTGGCCCG............ 17 2 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

CGTCGTCGGGCTCCTACTCGTCGACCGCCGGTTTCTCTGTGTCTAAACTTCATTCGGGTCGGCGTTCGGGCGAAAGCTTCGAGAGTAGTAGGGGCACAATACAAAGCGAGTGGCGGCCCGCTGAAGACGAGGCGGAAATTGAAGGTACCGGGGGTTATACCGTAGATAGAAAGACATGTCAACGCAATGATTGGGGGTCTAAATTCCTAAACGTCGTACAACAAAATCTGCGAGGCTAGTTTCATGTCTGAGATTAGAAACTAGATGAAAAAACTAGATAACGTCCTGTTTAGGTACAGACGATCGACGTGGTGGAACGGGGCGAGCTCGTCGGC
**************************************************.......(((......((((((...((((((...(((.......)))....))))))......)).)))).....)))....(((............)))...((((((((((...(((((((((....((((......))))...))))....))))).)))..)))))))........((...((((((((...(((.((........)))))....))))))))....))..************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 M025
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR902008
ovaries
 SRR1275487
Male larvae		 SRR902009
testis
..........................................................TCGGCGTTCGGGCGAAAGCTT................................................................................................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................AGATAGAAAGACATG............................................................................................................................................................. 15 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................CGGGCGAAAGCTTCGAGAGTA........................................................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.....................................................TCGGGTCGGCGTACGGGC........................................................................................................................................................................................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0 0 0 0
....................................................................................................................................CGGAGATTGAAGGTA............................................................................................................................................................................................ 15 1 3 0.67 2 0 2 0 0 0 0 0 0 0
..................................................................CGGGCGAACGCTTGTAGAGT......................................................................................................................................................................................................................................................... 20 3 5 0.20 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................TCGTGTTTAGGTAGAGAC.................................. 18 2 7 0.14 1 0 0 0 1 0 0 0 0 0
.....................................................TCAGGTCGTCGTGCGGGCGA...................................................................................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 1 0 0 0
..GCGTCGGGCTCCAACTCG........................................................................................................................................................................................................................................................................................................................... 18 2 8 0.13 1 0 0 0 0 1 0 0 0 0
....GTCGGGGTCCTACTC............................................................................................................................................................................................................................................................................................................................ 15 1 19 0.11 2 0 0 0 2 0 0 0 0 0
...........................................................................................................................................TGAAGGTACCGGTGG..................................................................................................................................................................................... 15 1 20 0.10 2 0 0 0 0 0 0 0 2 0
..............................GTTTGTCTATGTCTAAACT.............................................................................................................................................................................................................................................................................................. 19 2 13 0.08 1 0 0 0 0 0 0 0 0 1
............................................................................................................................................................................................................................................................ATTAGGAAGTAGATGAAGAA............................................................... 20 3 16 0.06 1 0 0 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................................................................................................................GGAAAGGGGCGAGCT....... 15 1 19 0.05 1 0 0 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................................GTGGCTAGGTTCATGACTG..................................................................................... 19 3 19 0.05 1 1 0 0 0 0 0 0 0 0
.......................................................................................................................................AGGTTGAAGGTACCGGTGGT.................................................................................................................................................................................... 20 3 20 0.05 1 1 0 0 0 0 0 0 0 0
.....TCGGGGTCCTACTCG........................................................................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0
......................................................................CGAAAGCTAAGAGAGTA........................................................................................................................................................................................................................................................ 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................................................................................................TGGAAAGGGGCGAGCTG...... 17 2 20 0.05 1 0 0 0 1 0 0 0 0 0
.........................................................................................AGGGGCACAATCCTA....................................................................................................................................................................................................................................... 15 2 20 0.05 1 1 0 0 0 0 0 0 0 0
.................................................................................GGAGTAGTAGGGTCACAGT........................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 0 1 0 0
.......................................................................................................................................AGGTTGAAGGTACCGGG....................................................................................................................................................................................... 17 2 20 0.05 1 1 0 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:19346027-19346361 + dsi_25365 GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGCTT---TCGA---------AGCT--CTCATCA--TC----CCCGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----TTAACTTCCATGGCCCCC------------------AA-TA--TGGCATC-TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAGA---------CGCTCCGATC--------AAA------GTACAGACTC------TAATCT---TTGAT----------------------CTACT--TTTTTGATCTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGA---GCAGC---CG
droSec2 scaffold_9:2117255-2117588 + GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---AAAGTAAGCC-----CAGCCG-------CAAGCCCGCTT---TCGA---------AGCT--CTCATCA--TC----CCTGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----TTAACTTCCATGGCCCCC------------------AA-TA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAGA---------CGCTCCGATC--------GAA------GTACAGACTC------TAATCT---TTGAT----------------------CTACT--TTCTTGATCTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGA---GCAGC---CG
dm3 chr2R:18818754-18819087 + GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTT---TCGA---------AGCT--CTCATCA--TC----CCCGTGTTATGTTT----C----------------GCTCACCGCCGGGCGATTTCTGC--TCCGC------------CT-----TTAACTTCCATGGCCCCC------------------AA-TA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAGA---------GGCTCCAATT--------GAA------GTACATACTC------TCATCC---TTCAT----------------------CTACT--TTCTTGACTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGA---GCAGC---CG
droEre2 scaffold_4845:20182057-20182390 + GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCTGTTT---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATATTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----TTAACTTACATGGCCCCC------------------AA-TA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCT-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAAA---------TGTCCCAAGC--------AAA------GCCCAGATTC------TAAACT---TTGAT----------------------CCACT--TTCTTGAATTATTCCAGGACAAATCCATGTCTACTAGCTGCACCACCTTGCCCCGGTCGA---GCAGC---CG
droYak3 2R:18784116-18784448 + GCAG-----CAGC------------ACGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTT---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----CTAACTTCCATGGCCCCC------------------AA-AA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTT-AAA---------TGTTCCAAGC--------GAG------ATTCAGACTC------TAACCT---TTGAT----------------------CTATT--TTCTTTACTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGGTCGA---GCAGC---CG
droEug1 scf7180000409672:6790078-6790412 + GCA--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATATTT----C----------------GCTCACCGCCGGGCGATTTCAGC--TCCGC------------CT---TTTTAACTTCCATGGCCCCC------------------AATTA--TGGCATT-TAT-CCTCT------------------TGTACAGT---TGC----GTT----ACTAACCC-AC-----A-GATTTAAGGATTTGCAGCATGTTGTTTGAAA---------CGATCTAAGT--------GAA------GTCTGGTCTC------TAACCT---TTAAT----------------------TTTAT--TTCTTGATTTATTTCAGGACAAATCCATGTCCACTAGCTGCACCACCTTGCCCCGGTCGA---GCAGC---AG
droBia1 scf7180000301754:4097755-4098093 + GCA--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCG-GCGATTTCAGC--TCCGC------------CT-----TTAACTCCCATGGCCCCA------------------AA-TCGTTGGCAT--TGT-CCTCT------------------TGTACAGT-TTTGCTACAGTT----ACTAACAC-CC-----A-GTTTTAAGGATTTGCAGCATGTTGTTTGAAG---------TCTCCTATGT--------AAC------GACTAGACTC------TAATCC--TTTGCT----------------------TCCCT--CTCTTGACTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACTTTGCCCCGGTCGA---GCAGC---CG
droTak1 scf7180000415306:39326-39653 - -CAG-----CGGC------------CAGAGGATGA--------------GCA---GCTGGT---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGC-----------------------TCGA---------AGCT--CTCATCAAATC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGATTTCATC--TGCGC------------CT-----TTAACTCCCATGGCCCCT-GA--------------AAA-TA--TGGCATTCTAT-CCTTT------------------TGTACAGT---TGC----GTT----ACTAACTC-TT-----A-GATTTAAGCATTTGCAGCATGTTGTTTGAAA---------TGTTTTAAGT--------GAT------ACCCGAACTC------TAATCT---TATATT---------------------TTAAT--TTCCTAATTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACTTTGCCCCGTTCGA---GCAGC---CG
droEle1 scf7180000491283:102111-102437 - GCA--------GC------------CGGAAGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------C-AGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTAT----C----------------GCTCACCGCCGGGCAACGTCAAC--TCCGC------------CC-----TTAACTTCCATGGCCCCC------------------AAATA--TGGCAT--TAT-TCCCT------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGCTGTTTGAGC---------CGTTTCTAGT--------CAA------GATC-AACTC------TAACTA--TTTGCT----------------------ATACT--T----TAATTTTTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGGTCGA---GTAGC---CG
droRho1 scf7180000779412:41633-41964 + GCG--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACGTCAGC--TCCGC------------CT-----CTAACTTTCATGGCCCCA------------------AA-TA--TGGCAT--TATCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACAC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTGGAC---------AGTGTTTAGT--------AAA------ATT-ATAGTT------TAACCT--TTTGCT----------------------TTACC--TTCTTTATTTATTGCAGGACAAATTCATGTCTGCTAGTTGCACCACTTTACCCCGCTCGA---GCAGC---CG
droFic1 scf7180000454066:2825121-2825460 + GCA--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTC---ACGA---------AGCTCTCTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACATCAGC--TTCGC------------CT-----CTAACTTCCATGCCCCCA-AA--------------AAA-TA--CGGCAT--TTA-CCCTT------------------TGTACAGT---TGC----GTT----ACTAACCT-CA-----A-TTTTTAAGGATTTGCAGCATGCTGTTTGGAA---------TGTCTTTTAT--------CAA------ATAAATATTC------TAATCT---TTAACT-----------CAC-------TTGTT--TTCCACTTTTTTTGCAGGACAAATCCATGTCTGCTAGTTGCACCACCTTGCCCCGATCAA---GCAGC---CG
droKik1 scf7180000302270:154995-155373 - GCCG--CCACCGC------------CGGAGGATGA--------------GCAGCAGCTGGC---GGCCAGAGAGACGCAGATATGATGAAGTAAGCC-----CAGCAG-------CCAC----------ACGA---------TGCTCGCTCATCATCTC----CCAGTGTTATGTTTTGCTC------------------TTACTGCCGGGCGACGTCACC--TCCGC------------CCGCGCCTTAACTTCCATGGCCCCATGACCCAAACAAAATATAAA-TA--TGGCAT--TATCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACAC-TC-----A-GAT-TAAGGATTTGCAGCATGATCATTGGACTGAAGAATCCTTCTTAC----------------------CTAACTCTGGTACTAATA-----------------------AGTTCTCCTTCCTCTTGCTGGACTCATTTCAGGACAAATCCATGTCTGCTAGCTACACTACCTTGCCGCGGACCAGTAGCAGC---CG
droAna3 scaffold_13266:15160321-15160670 + GCAGTCG--CAGCCGCAGTCGGCGGCGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAAACGCAGATTT---GAAGTAAGCC-----CAGC-----------------------TCGC---------AGCT--CTCATCA--TC----CCAGTGTTTTATTT----C----------------GCTCACCGCCGGGCAGCGCCAGA--TCCGC------------CC----CCTAACTCTCATGGCCCCC------------------AAAAA--CGGCAT---AT-CCCCT------------------TGTACAGT---TGC----GTT----ACTAACCTTTC-----G-GATTTAAGAGTTTCCAGCATGTTTCTTGGAT---------TGTTTTTCTTGGCATAGA-----CACCGCCAGTGTCC-----------------TAC-CTTTTTTAACAAAAA---------TC--TTCTCTG-CTCTTCCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGATCCA---GTAGC---CG
droBip1 scf7180000396385:324124-324467 + GCAG-----CCGCCGCCAT---CGGCGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAAACGCAGATTT---GAAGTAAGCC-----CAGC-----------------------TCGC---------AGCT--CTCATCA--TC----CCAGTGTTTACTTT----C----------------GCTCATCGCCGGGCAACGCCAGA--TACGC------------CC---CCCTAACTCTCATGGCCCCC------------------AAAAA--TGGCAT---AT-TCCCT------------------TGTACAGT---TGC----GTT----ACTAACCTTTC-----A-GATTTAAGAGTTTCCAGCATGTTTATTGGAT---------TGTTTTTCTTGGCATATA-----CTCC-CAAGT-GT----------------TTCAC-CTT-TTTA---AGAGAA----CTCTT--TTTTT--GTTTTTCCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCAGATCCA---GCAGC---CG
dp5 3:17801728-17802058 - GCTG--G--CAGCCCCCAT-------GCCGGACGA--------------GCC---AGTGCC---GGTTAGGGAGACGGAGATCT---AAAGTAAGCC-----CTGCCG-------GGAGTCCGTTCTAATCCA---------AGC-------TCA--TC----CAAGTGTTC-GTTTTGCTC----------------GTTCATCGCAGGGCGGCGT---G--TCAGC------------TC-----CTAACCTCCATGGCCCCT------------------A----------------CCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACCA-AC-----A-T-TTTCAGTATTTCCAGCATGTTCTTTGGAC---------TGTTTCCTGT--------AACCACAC----CACAATCTAGA------------------------AATAAAACATCTCTCTGCT-------CCTTTGTTTCAGGACAAATCCATGTCTACTAGCTGCACCACCTTGCCCAGGACCA---GCAGC---CG
droPer2 scaffold_73:248898-249228 + GCTG--G--CAGCCCCCAT-------GCCGGACGA--------------GCC---AGTGCC---GGTTAGGGAGACGGAGATCT---AAAGTAAGCC-----CTGCCG-------GGAGTCCGTTCTAATCCA---------AGC-------TCA--TC----CAAGTGTTC-GTTTTGCTC----------------GTTCATCGCAGGGCGGCGT---G--TCAGC------------TC-----CTAACCTCCATGGCCCCT------------------A----------------CCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACCA-AC-----A-T-TTTCAGTATTTCCAGCATGTTCTTTGGAC---------TGTTTCCTGT--------AACTACAC----CACAATCTAGA------------------------AATAAAAGATCTCTCTGCT-------CCTTTGTTTCAGGACAAATCCATGTCTACTAGCTGCACCACCTTGCCCAGGACCA---GCAGC---CG
droWil2 scf2_1100000004512:728743-729090 - GCCG--------------------------GATGAACAGCCCC-----AACC---GCTGGCAATGGGCAAAGAAACGCAACTCT---GAAGTAAGCTC----CAGCTA-------------CGTTA---C------------AG-------ATCA--TCCGC-AAAGTTTCTTCTTCTGCTCCTCCCCCCGCCCTTCTGTTCATCGC-GTGCAAACTCT-C--T-CAA------------TC-----TTAACTTCCATGGCCCTT------------------AT-T-----------CAG-TCTTG------------------TGTACAGTGTTTGC----CTT---TACTAACCA-AACGAACATGAT---TGCATTTTCAGCATGTTGTTTCATAA--G-AAA-A--CTCTCCT--------GAA------GAC-GAAAAC------TAATTAAA-TTGTT----------------------GTTGT--CTCTCTATATTTTCTAGGACAAATCCATGTCTGCTAGTTGCACTACCTTGCCCAGAACCA---GCAGC---CG
droVir3 scaffold_12875:6969511-6969846 + A--G-----CAAA------------CGG---ATGAGGCGCTC------AGCAGCAGC--TC---AGCCAAAGAAACGTCCATTT---GATGTAAGCCACAGACAGCCA-------CGAGGCTAA-A---TCCC----CGTACAGC-------TCA--TC----CAAGTGTTAA-T------C----------------GC--ATCG-----------CTCGTCTCTGA------------TC-----CTAACTTACAAAAACCCC------------------CT-CG--TTG---------CGCATTGTACAGAGCC--------------T---TGT----GTTGCCCACTAACAG-AA-----A-C-GTTTTGCATTTTCAGCATGTTTATTTATGC--G-TT--AG-TTCTAGC--------CCA------ATT-AGAACT------TAATCTAA-TGTAC----------------------GTTTT--TTAACATTTCTTTGCAGGACAAATCCATGTCCGCTAGCTGCACCACCTTGCCCCGCAGCAGCAGCAGC---CG
droMoj3 scaffold_6496:25650971-25651288 + A--G-----CAAT------------CCGATGAGGA---GCCCAGTGTCAGCGGCGAC--TC---AGCTAAAGAAACGTCCATTT---GATGTAAGCCG----TAGGCCTAA-ACACAAACCCGA-------------------AC-------TCA--TC----CG----------------------------------------------------CTCGTCTCAGCTACCCATTACTACT-----CAAACTCCCCTCGCTGCG---------------------------------------CACTGTACAGAGTCTTGTTTGTGTGT-TT---TGC----GTT---TACTAACAA-A---------TCTTTTGCA-TTTCAGCATGTGCT-C-AAC---------TATCATCTGA--C-----AAT------GCCCATATCC------TA-TCT---CATAT----------------------GTCCA--ATTTGGTCTCTTTCCAGGACAAGTCCATGTCCGCTAGCTGCACTACTTTGCCCCGCAGCA---GCAGC---CG
droGri2 scaffold_15245:528211-528571 + GA---------GC------------CTGAGGACAT--------------CAA---G------------AAAGAAACCTCGATTT---GATGTAAGCC-----CAGGAAAAACACACAAAACAGAAA---ATGAAATC---CCAGCT--C-----A--TTCAAAACAGTGTTTGATTT-TATAT---------------TCGCATCGCATCGCATCG-CTCG--TCTGC------------TC-----TTAACTGCCATGACTCCC------------------CCCTA--CG-CTG--ACC-CCCCTTGTACAGAGCCT---CTGTGTG--TT---TGT----GCC---CACTAACAA-AA-----T-GTGTTTTGCAGTTTCAGCATGTTTTTTAATGA--AGAAA-CAACTCTAGG--------CAG------ATG--ACTAC------TAATTA--TTTCCA----------------------TTATT--TATTATGACTTTTGCAGGACAAATCAATGTCGGCCAGCTGCACCACTTTGCCACGTAGCAGCAGCAGCAGGAG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGCTT---TCGA---------AGCT--CTCATCA--TC----CCCGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----TTAACTTCCATGGCCCCC------------------AA-TA--TGGCATC-TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAGA---------CGCTCCGATC--------AAA------GTACAGACTC------TAATCT---TTGAT----------------------CTACT--TTTTTGATCTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGA---GCAGC---CGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACT--TTTTTGATCTATTGCA.........................................................2111.00100000000100000000
droSec2
GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---AAAGTAAGCC-----CAGCCG-------CAAGCCCGCTT---TCGA---------AGCT--CTCATCA--TC----CCTGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----TTAACTTCCATGGCCCCC------------------AA-TA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAGA---------CGCTCCGATC--------GAA------GTACAGACTC------TAATCT---TTGAT----------------------CTACT--TTCTTGATCTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGA---GCAGC---CGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTT---TCGA---------AGCT--CTCATCA--TC----CCCGTGTTATGTTT----C----------------GCTCACCGCCGGGCGATTTCTGC--TCCGC------------CT-----TTAACTTCCATGGCCCCC------------------AA-TA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAGA---------GGCTCCAATT--------GAA------GTACATACTC------TCATCC---TTCAT----------------------CTACT--TTCTTGACTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGCTCGA---GCAGC---CGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................AAGAGACACAGATTT---GAAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100100000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCTTGCCCCGCTCGA---GCAGC---CG2613.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCACCTTGCCCCGCTCGA---GC........2212.0020000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGTCTGCTAGCTGCACCACCTT........................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGCTAGCTGCACCACCTTGC......................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCATGTCTGCTAGCTGCACCA............................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................TGGC---GGCCAAAGAGACACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGCTAGCTGCACCACCTT........................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................C-----A-GATTTAAGGATTTGCAGCA....................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCATGTCTGCTAGCTGCACCACC..........................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCATGTCTGCTAGCTGCACC.............................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTAGCTGCACCAC...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCACCTTGCCCCGCTCGA---GCAGC---..2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................................................................................................................................................................................................................TCCGC------------CT-----TTAACTTCCATGGC..................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCCATGTCTGCTAGCTGCA...............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.CAG-----CAGC------------CCGAGGATGA--------------GCA---G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCCATGTCTGCTAGCTGCACCAC...........................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACCACCTTGCCCC...................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT--TTCTTGACTTATTGCAG........................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGACAAATCCATGTCTGCTAGCTGCAC..............................3011.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGCTAGCTGCACCACCTTG.......................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGCTAGCTGCACCACCTTGC......................2211.0010000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................CC-----A-GATTTAAGGATTTGCAGCATGTTG...............................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..AG-----CAGC------------CCGAGGATGA--------------GCA---GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................CAT--TAT-CTTTC------------------TGTACAGT---TG.....................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTGCTAGCTGCACCA............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGCCCCGCTCGA---GCAGC---C.2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCATGTCTGCTAGCTGCACCAC...........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCTTGCCCCGCTCGA---GCAGC---..2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTAGA---------GGCTCCAATT--------GAA------GT..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................GCAGCATGTTGTTTTAGA---------GGCTCCAA.......................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.................................................................................................................................................................................................................................CGC------------CT-----TTAACTTCCATGGCC.................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCTGCTAGCTGCACCACCTT........................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GC---GGCCAAAGAGACACAGATTT---GAA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGTCTGCTAGCTGCACCACCTTG.......................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCTTGCCCCGCTCGA---G.........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.................................................GCA---GCTGGC---GGCCAAAGAGACACA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................ATTTGCAGCATGTTGTTTTAGA---------...............................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGCTAGCTGCACC.............................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............C------------CCGAGGATGA--------------GCA---GCTGGC---GG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAATCCATGTCTGCTAGCTGCACCACC..........................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
.......................................................................GAGACACAGATTT---GAAGAC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000000000000000
...................................................................................................................................................................................................................................................................................................GGCAT--TAT-CTTTC------------------TGTGG.............................................................................................................................................................................................................................................18110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
GCAG-----CAGC------------CCGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCTGTTT---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATATTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----TTAACTTACATGGCCCCC------------------AA-TA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCT-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTTAAA---------TGTCCCAAGC--------AAA------GCCCAGATTC------TAAACT---TTGAT----------------------CCACT--TTCTTGAATTATTCCAGGACAAATCCATGTCTACTAGCTGCACCACCTTGCCCCGGTCGA---GCAGC---CGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAGCTGCACCACCTTGCCCCGGT................2611.0011000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTACTAGCTGCACCACCTTGCC.....................2511.0011000000
droYak3
GCAG-----CAGC------------ACGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTT---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACTTCTGC--TCCGC------------CT-----CTAACTTCCATGGCCCCC------------------AA-AA--TGGCAT--TAT-CTTTC------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTT-AAA---------TGTTCCAAGC--------GAG------ATTCAGACTC------TAACCT---TTGAT----------------------CTATT--TTCTTTACTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGGTCGA---GCAGC---CGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..........AGC------------ACGAGGATGA--------------GCA---GCTGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
droEug1
GCA--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAAAGAGACACAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATATTT----C----------------GCTCACCGCCGGGCGATTTCAGC--TCCGC------------CT---TTTTAACTTCCATGGCCCCC------------------AATTA--TGGCATT-TAT-CCTCT------------------TGTACAGT---TGC----GTT----ACTAACCC-AC-----A-GATTTAAGGATTTGCAGCATGTTGTTTGAAA---------CGATCTAAGT--------GAA------GTCTGGTCTC------TAACCT---TTAAT----------------------TTTAT--TTCTTGATTTATTTCAGGACAAATCCATGTCCACTAGCTGCACCACCTTGCCCCGGTCGA---GCAGC---AGSizeHit CountTotal NormTotal
No Reads
droBia1
GCA--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCG-GCGATTTCAGC--TCCGC------------CT-----TTAACTCCCATGGCCCCA------------------AA-TCGTTGGCAT--TGT-CCTCT------------------TGTACAGT-TTTGCTACAGTT----ACTAACAC-CC-----A-GTTTTAAGGATTTGCAGCATGTTGTTTGAAG---------TCTCCTATGT--------AAC------GACTAGACTC------TAATCC--TTTGCT----------------------TCCCT--CTCTTGACTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACTTTGCCCCGGTCGA---GCAGC---CGSizeHit CountTotal NormTotal
No Reads
droTak1
-CAG-----CGGC------------CAGAGGATGA--------------GCA---GCTGGT---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGC-----------------------TCGA---------AGCT--CTCATCAAATC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGATTTCATC--TGCGC------------CT-----TTAACTCCCATGGCCCCT-GA--------------AAA-TA--TGGCATTCTAT-CCTTT------------------TGTACAGT---TGC----GTT----ACTAACTC-TT-----A-GATTTAAGCATTTGCAGCATGTTGTTTGAAA---------TGTTTTAAGT--------GAT------ACCCGAACTC------TAATCT---TATATT---------------------TTAAT--TTCCTAATTTATTGCAGGACAAATCCATGTCTGCTAGCTGCACCACTTTGCCCCGTTCGA---GCAGC---CGSizeHit CountTotal NormTotal
No Reads
droEle1
GCA--------GC------------CGGAAGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------C-AGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTAT----C----------------GCTCACCGCCGGGCAACGTCAAC--TCCGC------------CC-----TTAACTTCCATGGCCCCC------------------AAATA--TGGCAT--TAT-TCCCT------------------TGTACAGT---TGC----GTT----ACTAACCC-CC-----A-GATTTAAGGATTTGCAGCATGCTGTTTGAGC---------CGTTTCTAGT--------CAA------GATC-AACTC------TAACTA--TTTGCT----------------------ATACT--T----TAATTTTTGCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGGTCGA---GTAGC---CGSizeHit CountTotal NormTotal
No Reads
droRho1
GCG--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTA---TCGA---------AGCT--CTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACGTCAGC--TCCGC------------CT-----CTAACTTTCATGGCCCCA------------------AA-TA--TGGCAT--TATCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACAC-CC-----A-GATTTAAGGATTTGCAGCATGTTGTTTGGAC---------AGTGTTTAGT--------AAA------ATT-ATAGTT------TAACCT--TTTGCT----------------------TTACC--TTCTTTATTTATTGCAGGACAAATTCATGTCTGCTAGTTGCACCACTTTACCCCGCTCGA---GCAGC---CGSizeHit CountTotal NormTotal
No Reads
droFic1
GCA--------GC------------CGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAGACGCAGATTT---GAAGTAAGCC-----CAGCCG-------CAAGCCCGTTC---ACGA---------AGCTCTCTCATCA--TC----CCAGTGTTATGTTT----C----------------GCTCACCGCCGGGCGACATCAGC--TTCGC------------CT-----CTAACTTCCATGCCCCCA-AA--------------AAA-TA--CGGCAT--TTA-CCCTT------------------TGTACAGT---TGC----GTT----ACTAACCT-CA-----A-TTTTTAAGGATTTGCAGCATGCTGTTTGGAA---------TGTCTTTTAT--------CAA------ATAAATATTC------TAATCT---TTAACT-----------CAC-------TTGTT--TTCCACTTTTTTTGCAGGACAAATCCATGTCTGCTAGTTGCACCACCTTGCCCCGATCAA---GCAGC---CGSizeHit CountTotal NormTotal
No Reads
droKik1
GCCG--CCACCGC------------CGGAGGATGA--------------GCAGCAGCTGGC---GGCCAGAGAGACGCAGATATGATGAAGTAAGCC-----CAGCAG-------CCAC----------ACGA---------TGCTCGCTCATCATCTC----CCAGTGTTATGTTTTGCTC------------------TTACTGCCGGGCGACGTCACC--TCCGC------------CCGCGCCTTAACTTCCATGGCCCCATGACCCAAACAAAATATAAA-TA--TGGCAT--TATCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACAC-TC-----A-GAT-TAAGGATTTGCAGCATGATCATTGGACTGAAGAATCCTTCTTAC----------------------CTAACTCTGGTACTAATA-----------------------AGTTCTCCTTCCTCTTGCTGGACTCATTTCAGGACAAATCCATGTCTGCTAGCTACACTACCTTGCCGCGGACCAGTAGCAGC---CGSizeHit CountTotal NormTotal
No Reads
droAna3
GCAGTCG--CAGCCGCAGTCGGCGGCGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAAACGCAGATTT---GAAGTAAGCC-----CAGC-----------------------TCGC---------AGCT--CTCATCA--TC----CCAGTGTTTTATTT----C----------------GCTCACCGCCGGGCAGCGCCAGA--TCCGC------------CC----CCTAACTCTCATGGCCCCC------------------AAAAA--CGGCAT---AT-CCCCT------------------TGTACAGT---TGC----GTT----ACTAACCTTTC-----G-GATTTAAGAGTTTCCAGCATGTTTCTTGGAT---------TGTTTTTCTTGGCATAGA-----CACCGCCAGTGTCC-----------------TAC-CTTTTTTAACAAAAA---------TC--TTCTCTG-CTCTTCCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCCGATCCA---GTAGC---CGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................CGGAGGATGA--------------GCA---GCTGGC---GGCCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
.......................................................................GAAACGCAGATTT---GAAGTAAGCC-----CAGC-----------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.001000001
droBip1
GCAG-----CCGCCGCCAT---CGGCGGAGGATGA--------------GCA---GCTGGC---GGCCAGAGAAACGCAGATTT---GAAGTAAGCC-----CAGC-----------------------TCGC---------AGCT--CTCATCA--TC----CCAGTGTTTACTTT----C----------------GCTCATCGCCGGGCAACGCCAGA--TACGC------------CC---CCCTAACTCTCATGGCCCCC------------------AAAAA--TGGCAT---AT-TCCCT------------------TGTACAGT---TGC----GTT----ACTAACCTTTC-----A-GATTTAAGAGTTTCCAGCATGTTTATTGGAT---------TGTTTTTCTTGGCATATA-----CTCC-CAAGT-GT----------------TTCAC-CTT-TTTA---AGAGAA----CTCTT--TTTTT--GTTTTTCCAGGACAAATCCATGTCTGCTAGCTGCACCACCTTGCCCAGATCCA---GCAGC---CGSizeHit CountTotal NormTotal
No Reads
dp5
GCTG--G--CAGCCCCCAT-------GCCGGACGA--------------GCC---AGTGCC---GGTTAGGGAGACGGAGATCT---AAAGTAAGCC-----CTGCCG-------GGAGTCCGTTCTAATCCA---------AGC-------TCA--TC----CAAGTGTTC-GTTTTGCTC----------------GTTCATCGCAGGGCGGCGT---G--TCAGC------------TC-----CTAACCTCCATGGCCCCT------------------A----------------CCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACCA-AC-----A-T-TTTCAGTATTTCCAGCATGTTCTTTGGAC---------TGTTTCCTGT--------AACCACAC----CACAATCTAGA------------------------AATAAAACATCTCTCTGCT-------CCTTTGTTTCAGGACAAATCCATGTCTACTAGCTGCACCACCTTGCCCAGGACCA---GCAGC---CGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................AGTGCC---GGTTAGGGAGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020101000000
.....................................................................................................................................................................................C----------------GTTCATCGCAGGGCGGCGT---G--TCAGC------------T......................................................................................................................................................................................................................................................................................................................................2711.0010100000000
..................................................CC---AGTGCC---GGTTAGGGAGACGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000001000
.................................................GCC---AGTGCC---GGTTAGGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..............................................................................................................................................................................TTTTGCTC----------------GTTCATCGCAGGG....................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGCT-------CCTTTGTTTCAG........................................................1911.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCACCTTGCCCAGGACCA---GCA.......2211.0010000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCATGTCTACTAGCTGCACCACC..........................2311.0010001000000
.......................................................AGTGCC---GGTTAGGGAGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010000
.................................................................................................................................................................................................................................AGC------------TC-----CTAACCTCCATGGCCC................................................................................................................................................................................................................................................................................................................2111.0010100000000
........................................................GTGCC---GGTTAGGGAGACGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCTACTAGCTGCACCACC..........................2011.0010001000000
droPer2
GCTG--G--CAGCCCCCAT-------GCCGGACGA--------------GCC---AGTGCC---GGTTAGGGAGACGGAGATCT---AAAGTAAGCC-----CTGCCG-------GGAGTCCGTTCTAATCCA---------AGC-------TCA--TC----CAAGTGTTC-GTTTTGCTC----------------GTTCATCGCAGGGCGGCGT---G--TCAGC------------TC-----CTAACCTCCATGGCCCCT------------------A----------------CCCCCTT------------------TGTACAGT---TGC----GTT----ACTAACCA-AC-----A-T-TTTCAGTATTTCCAGCATGTTCTTTGGAC---------TGTTTCCTGT--------AACTACAC----CACAATCTAGA------------------------AATAAAAGATCTCTCTGCT-------CCTTTGTTTCAGGACAAATCCATGTCTACTAGCTGCACCACCTTGCCCAGGACCA---GCAGC---CGSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGCACCACCTTGCCCA...................1911.001010000
........................................................GTGCC---GGTTAGGGAGACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
.................................GA--------------GCC---AGTGCC---GGTTAGGGAGACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
.................................................................GTTAGGGAGACGGAGATC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000001
droWil2
GCCG--------------------------GATGAACAGCCCC-----AACC---GCTGGCAATGGGCAAAGAAACGCAACTCT---GAAGTAAGCTC----CAGCTA-------------CGTTA---C------------AG-------ATCA--TCCGC-AAAGTTTCTTCTTCTGCTCCTCCCCCCGCCCTTCTGTTCATCGC-GTGCAAACTCT-C--T-CAA------------TC-----TTAACTTCCATGGCCCTT------------------AT-T-----------CAG-TCTTG------------------TGTACAGTGTTTGC----CTT---TACTAACCA-AACGAACATGAT---TGCATTTTCAGCATGTTGTTTCATAA--G-AAA-A--CTCTCCT--------GAA------GAC-GAAAAC------TAATTAAA-TTGTT----------------------GTTGT--CTCTCTATATTTTCTAGGACAAATCCATGTCTGCTAGTTGCACTACCTTGCCCAGAACCA---GCAGC---CGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
................................................AACC---GCTGGCAATGGGCAAAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00101000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTCTGCTAGTTGCACTACCTT........................2311.00101000
......................................................................AGAAACGCAACTCT---GAAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
droVir3
A--G-----CAAA------------CGG---ATGAGGCGCTC------AGCAGCAGC--TC---AGCCAAAGAAACGTCCATTT---GATGTAAGCCACAGACAGCCA-------CGAGGCTAA-A---TCCC----CGTACAGC-------TCA--TC----CAAGTGTTAA-T------C----------------GC--ATCG-----------CTCGTCTCTGA------------TC-----CTAACTTACAAAAACCCC------------------CT-CG--TTG---------CGCATTGTACAGAGCC--------------T---TGT----GTTGCCCACTAACAG-AA-----A-C-GTTTTGCATTTTCAGCATGTTTATTTATGC--G-TT--AG-TTCTAGC--------CCA------ATT-AGAACT------TAATCTAA-TGTAC----------------------GTTTT--TTAACATTTCTTTGCAGGACAAATCCATGTCCGCTAGCTGCACCACCTTGCCCCGCAGCAGCAGCAGC---CGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................CAGC--TC---AGCCAAAGAAACG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000010000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGTTTATTTATGC--G-TT--AG-TTC.........................................................................................................................................................2111.001000000000000000000000000000100000000000000000000000000000000000
.......................................................GC--TC---AGCCAAAGAAACGTCCATTT---GA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000010000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTAGCTGCACCACCTT........................1911.001000000000000000000000000001000000000000000000000000000000000000
..........................................................................................................................................GTACAGC-------TCA--TC----CAAGTGTTG...........................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000001000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................GT----GTTGCCCACTAACAG-AA-----A-C-.....................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CAGAGCC--------------T---TGT----GTTGCCCACT......................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................................................GCTAA-A---TCCC----CGTACAGC-------TCA--..........................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGCCCCGCAGCAGCAGC........2111.001000000000000000000100000000000000000000000000000000000000000000
droMoj3
A--G-----CAAT------------CCGATGAGGA---GCCCAGTGTCAGCGGCGAC--TC---AGCTAAAGAAACGTCCATTT---GATGTAAGCCG----TAGGCCTAA-ACACAAACCCGA-------------------AC-------TCA--TC----CG----------------------------------------------------CTCGTCTCAGCTACCCATTACTACT-----CAAACTCCCCTCGCTGCG---------------------------------------CACTGTACAGAGTCTTGTTTGTGTGT-TT---TGC----GTT---TACTAACAA-A---------TCTTTTGCA-TTTCAGCATGTGCT-C-AAC---------TATCATCTGA--C-----AAT------GCCCATATCC------TA-TCT---CATAT----------------------GTCCA--ATTTGGTCTCTTTCCAGGACAAGTCCATGTCCGCTAGCTGCACTACTTTGCCCCGCAGCA---GCAGC---CGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CC------TA-TCT---CATAT----------------------GTCCA--ATTTG....................................................................2211.001100000
droGri2
GA---------GC------------CTGAGGACAT--------------CAA---G------------AAAGAAACCTCGATTT---GATGTAAGCC-----CAGGAAAAACACACAAAACAGAAA---ATGAAATC---CCAGCT--C-----A--TTCAAAACAGTGTTTGATTT-TATAT---------------TCGCATCGCATCGCATCG-CTCG--TCTGC------------TC-----TTAACTGCCATGACTCCC------------------CCCTA--CG-CTG--ACC-CCCCTTGTACAGAGCCT---CTGTGTG--TT---TGT----GCC---CACTAACAA-AA-----T-GTGTTTTGCAGTTTCAGCATGTTTTTTAATGA--AGAAA-CAACTCTAGG--------CAG------ATG--ACTAC------TAATTA--TTTCCA----------------------TTATT--TATTATGACTTTTGCAGGACAAATCAATGTCGGCCAGCTGCACCACTTTGCCACGTAGCAGCAGCAGCAGGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 09:45 AM