ID:

dsi_25337

 Coordinate:

2r:4844697-4844838 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4844568_4844696_-]; CDS [2r_4844568_4844696_-]; CDS [2r_4844839_4844941_-]; exon [2r_4844839_4844941_-]; intron [2r_4844697_4844838_-]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------------------------------------------------------------------------------------------##################################################
CACCACCCTCGGACGAGGAGTTCGACCGCCACCTGGTTAACTATCCAGACGTGAGTATTGTTCAAATGGCCCAGTGCTATGTTCTGTGTATGTGTTTAAGTTCCAAGCACTTCACTGCGCCCCCACGCACTGCATCTCGCCTTGTTAACAAGTCTCTTCCAATGCAACGCCCTCATTTGTACCTGTGCGCAGGTGTGCAAAAGCCCCAGCATTTTTTCATCGCCTAACCTAGTCGTACGGCT
**************************************************..(((..(((((.....(((.((((((..((....(((((.(((...((((.......))))))))))))...)).))))))......))).....)))))..)))...........(((...((........)).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M023
head
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
...............................................................................................................................................................................................................................CTAACCTAGTCGTACGGC. 18 0 1 2.00 2 1 1 0 0
...............................................................................................................................................................................................................................CTAACCTAGTCGTACGGCT 19 0 1 2.00 2 2 0 0 0
.......CTCGGACGAGGAGTTCGACCGCCACC................................................................................................................................................................................................................. 26 0 1 2.00 2 2 0 0 0
...............................................................................................................................................................................................................................CTAACCTAGTCGCACGGCT 19 1 1 1.00 1 0 0 1 0
.........................................................................................................................................................................................................................CATCGCCTAACCTAGTCGTACGGC. 24 0 1 1.00 1 1 0 0 0
..CCACCCTCGGACGAGGAGTTCGAC........................................................................................................................................................................................................................ 24 0 1 1.00 1 1 0 0 0
..............................................................................................................................................................................................................................CCTAACCTAGTCGTACGGCC 20 1 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................CATTTTTTCATCGCCTAAC.............. 19 0 1 1.00 1 1 0 0 0
......................................AACTATCCAGGTGTGA............................................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1

Anti-sense strand reads

GTGGTGGGAGCCTGCTCCTCAAGCTGGCGGTGGACCAATTGATAGGTCTGCACTCATAACAAGTTTACCGGGTCACGATACAAGACACATACACAAATTCAAGGTTCGTGAAGTGACGCGGGGGTGCGTGACGTAGAGCGGAACAATTGTTCAGAGAAGGTTACGTTGCGGGAGTAAACATGGACACGCGTCCACACGTTTTCGGGGTCGTAAAAAAGTAGCGGATTGGATCAGCATGCCGA
**************************************************..(((..(((((.....(((.((((((..((....(((((.(((...((((.......))))))))))))...)).))))))......))).....)))))..)))...........(((...((........)).)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 M024
male body		 SRR618934
dsim w501 ovaries
 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
.......................................................................................................................TGGGGTACGTGACGTAGAGCGGA.................................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
........................................................................................................................GGGCTGGGTGACGTAGAGCGGA.................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.......................................................................................................................TGGGGTATGTGACGTAGAGCGGA.................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................GGGTACGCGACGTAGAGCGGA.................................................................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................CCAGTTGCTAGGTCTGCACT............................................................................................................................................................................................ 20 2 1 1.00 1 0 1 0 0 0 0
............................................................................................................................TGCGTGACGTAGAGTG...................................................................................................... 16 1 2 0.50 1 0 0 1 0 0 0
.........................................................................................................................GGGTGTGTGAAGTAGAGCG...................................................................................................... 19 2 3 0.33 1 1 0 0 0 0 0
.........................................................................................................................GGGTTCGGGACGTAGAGCGTAA................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
.....................................................................................................AGGTTTGTGAAGTGAAGCG.......................................................................................................................... 19 2 5 0.20 1 1 0 0 0 0 0
.......................................................................................................................CGAGGTACGTGACGTAGAGCGGA.................................................................................................... 23 3 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................TGGTGTGTGACGTAGAGTGGAA................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
.........................................................................................................................AGGTGTGTGACGTAGAGCG...................................................................................................... 19 2 6 0.17 1 1 0 0 0 0 0
........................................................................................ATACTCAACTTCAAGGTT........................................................................................................................................ 18 2 7 0.14 1 0 0 0 1 0 0
.......................................................................................................................GGAGGTACGTGACGTAGAG........................................................................................................ 19 2 9 0.11 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................TAGCGGGTTGGGTCAGCGTG.... 20 3 10 0.10 1 0 0 0 0 1 0
..................................................................................................................................................................................................CACGTGTTCGGGTTCGTAC............................. 19 3 20 0.05 1 1 0 0 0 0 0
....................................................................................................................................................................................................................AAAAACTAGGGGATTGG............. 17 2 20 0.05 1 0 0 0 0 0 1

Generated: 04/23/2015 at 07:25 AM