ID:

dsi_25320

 Coordinate:

3r:17709339-17709488 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-15.5 -15.3 -15.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCCCCGCCGCCCGAGTGTGCGTGTGTATGTGTGTCAAGGTTCCGGAAGTTGAGCCGCCGTAGAATTGATTTCCTATACCCCAAGTCGCTGTTGCTGCCGCTGCTGTTGTTCTTATTGTGTTTTTGTGGCTGTGGACATTGAACTTGAGTCGAAATGCGCACTAACCCGTTATCCATGCATATCTCTTTTCGATCCGGCAGCCGTCTAGCCCAGCAGCTCTCTTCCCCCCACAATAAACACACACAAGCTG
*****************************************************************************...(((((((.((((...(((((........................)))))....)))).)).)))))..****************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M025
embryo
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
...............................................................................................................................GCTGTGGACATTGAACTTGAG...................................................................................................... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0
.....................................................................................................................................................................................TCTCTTTTCGATCCGGCAGCC................................................ 21 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0
..........................................................................................................................TTGTGGCTGTGGACATTGAAC........................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 1 0 0 0
..............................................AGTTGAGCCGCCGTAGAATTG....................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
......................................................................................................................................................................................................................AGCTCTCTTCCCCCCACAAT................ 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
................................GTCAAGGTTCCGGAGGTTGAG..................................................................................................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................CTCTTTTCGATCCGGCAGCCG............................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.............................................................................CCCCAAGTCGCTGTTGCTGCC........................................................................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................................................................GCAGCTCTCTTCCCCCCAC................... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0
................................................................................CAAGTCGCTGTTGCTGCCGCT..................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
......................................................CGCCGTAGAATTGATTTCC................................................................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................TGAGTCGAAATGCGCACTAACCCGTT................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
...............................TGTCAAGGTTCCGGAAGTTGA...................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............................................................................................................................................................................................................CTAGCCCAGCAGCTCTCTTCCCCCCAC................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0
....................................................................................................................................................................................................................................CACAATAAACACACACAAG... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0
..............................................................................................................................................................................................................AGCCCAGCAGCTCTCTTCCC........................ 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
............GAGTGTGCGTGTGTATGTG........................................................................................................................................................................................................................... 19 0 2 0.50 1 0 0 0 0 0 1 0 0 0 0
...........................................................................................TGCTGCCGCTGATGTTGTTC........................................................................................................................................... 20 1 5 0.20 1 0 0 0 0 0 0 0 0 1 0
.........................................................CGTAGAATTGATTTT.................................................................................................................................................................................. 15 1 20 0.15 3 0 0 0 0 0 0 3 0 0 0
....................................................................................................................................GGACACTGAACTTGA....................................................................................................... 15 1 17 0.12 2 0 0 0 0 0 0 0 0 0 2
...........................................................................................TGCCGCCGCTGCTGTTGTTAATA........................................................................................................................................ 23 3 14 0.07 1 0 1 0 0 0 0 0 0 0 0
................................GTTAAGATTCCGGAAGCTG....................................................................................................................................................................................................... 19 3 17 0.06 1 0 0 1 0 0 0 0 0 0 0
.......................................................................................................................................GATTGTACTTGATTCGAAAT............................................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

AGGGGCGGCGGGCTCACACGCACACATACACACAGTTCCAAGGCCTTCAACTCGGCGGCATCTTAACTAAAGGATATGGGGTTCAGCGACAACGACGGCGACGACAACAAGAATAACACAAAAACACCGACACCTGTAACTTGAACTCAGCTTTACGCGTGATTGGGCAATAGGTACGTATAGAGAAAAGCTAGGCCGTCGGCAGATCGGGTCGTCGAGAGAAGGGGGGTGTTATTTGTGTGTGTTCGAC
******************************************************************************************************...(((((((.((((...(((((........................)))))....)))).)).)))))..***************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 M053
female body
 SRR553486
Makindu_3 day-old ovaries
 M023
head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..................................................................................................................................................................................TATAGAGAAAAGGTAGGCCGT................................................... 21 1 1 1.00 1 0 0 0 0 0 1 0
..................................GTTCCAAGGCCTTCGAATTGGC.................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................................................ATGAAGGGGGGTGTTATTTGTGT......... 23 2 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................TAGGTACGTATAGAGAAAAG............................................................ 20 0 1 1.00 1 0 0 0 1 0 0 0
...........................GGACACAGTTCCAAGGGCTTC.......................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................AGAGAAAAGCTAGGCCGTCGGC............................................... 22 0 1 1.00 1 1 0 0 0 0 0 0
.........................ATACACACAGTTCCAAGGCCT............................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 1 0 0
..........................................................................................................................................................................................AAAGCTAGGCCGTCG................................................. 15 0 2 0.50 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................CAGATCGGGTCGTTGA................................ 16 1 2 0.50 1 0 0 0 0 0 0 1
.................................AGGTCCAAGGCCTTCGACTTG.................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0
............................................................................................................................................................................................AGCTAGGCCGGCGGC............................................... 15 1 3 0.33 1 0 0 0 0 0 0 1
................................................AACTAGACAGCATCTTAACTA..................................................................................................................................................................................... 21 3 4 0.25 1 1 0 0 0 0 0 0
.............................................................................................GACGGCGACGACCTCAAGTAT........................................................................................................................................ 21 3 13 0.08 1 0 1 0 0 0 0 0
........................................................................................................................................................................................GAATAGCTAGGCAGTC.................................................. 16 2 18 0.06 1 0 0 0 1 0 0 0
.......GTGGGCTCACACGCACAAT................................................................................................................................................................................................................................ 19 3 20 0.05 1 0 1 0 0 0 0 0

Generated: 04/24/2015 at 02:25 AM