ID:

dsi_25317

 Coordinate:

x:5171955-5172217 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.0 -39.8 -39.7

Flybase annnotation

CDS [x_5171777_5171908_-]; five_prime_UTR [x_5171909_5171954_-]; exon [x_5172218_5172271_-]; five_prime_UTR [x_5172218_5172271_-]; exon [x_5171777_5171954_-]; intron [x_5171955_5172217_-]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
ACCAATTTGCGCAACCAAAAGTCTTGAGTATTCAACTGCTGCTGCAAACCGTATGACTGATTTTTTCAATTTGATCAAAGCCTAGCGATTACCTCCCTAAGAACTTTATACCAGCTTACAAATACGAACATATACACCCGGATATCCATTTGCATATTTGAATGGCACAGCAATAGCTTCGATTACCTAGGATTTACTATTACTATAAAGCGCTAGCGAAAGATTTCCAACTCCCCATACCGTAGATAGTGTAATCACACAGTATCTACATATATACAAATATATATATATCTGATCTGATCTGATCCGATAAATAGGAAGGAGGATCGGAAGCGAGCGTGCAGAGCGAGGGGTGAGGAATGC
**************************************************(((((..(((.....)))....((((...((.(((((................(((((((...(((..((((((((((.((((........))))...))))..))))))...)))..(((....))).........(((......)))....))))))))))))))....))))..........))))).(((((((.(((......))).)))))))(((((((....))))))).((((.((((......)))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 M024
male body
.........................................................................................TACCTCCCTAAGAACTTTATACCAG......................................................................................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0
.........................................................................................................................................................ATATTGGAGTGGCACAGCAGTA............................................................................................................................................................................................ 22 3 2 0.50 1 0 1 0 0 0 0
.................................................................................................................................................................................................................GCGCGAGCGAAAGAT........................................................................................................................................... 15 1 10 0.20 2 0 0 0 0 2 0
...AATTTGCGCAACCAGA........................................................................................................................................................................................................................................................................................................................................................ 16 1 5 0.20 1 0 0 1 0 0 0
.................................................................................................TAAGAACTTCATACC........................................................................................................................................................................................................................................................... 15 1 11 0.18 2 0 0 0 2 0 0
.................................................................................................................................GTATACACCCGGATA........................................................................................................................................................................................................................... 15 1 8 0.13 1 0 0 1 0 0 0
.............................ATTCAACTGGTGCTGCTAAG.......................................................................................................................................................................................................................................................................................................................... 20 3 11 0.09 1 0 0 0 0 0 1
.................................................................................................TAGGAACTTTATACC........................................................................................................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 1 0 0
.....................................................................................CGATTACCTGCACAAGAACT.................................................................................................................................................................................................................................................................. 20 3 13 0.08 1 1 0 0 0 0 0
.............................................................................................................................................................................................................AGTAGCGCTAGCGAAAGAT........................................................................................................................................... 19 3 14 0.07 1 0 0 0 0 1 0
.................................GACTGCTGCTGCAAAACGTC...................................................................................................................................................................................................................................................................................................................... 20 3 17 0.06 1 0 0 0 1 0 0
...........................................................................................................................................................................................................................................................................................ATCTATAGCTGATCTGA............................................................... 17 2 20 0.05 1 0 0 1 0 0 0
................................................................................................................................................................................CTCCGAATACCTAGG............................................................................................................................................................................ 15 2 20 0.05 1 0 0 0 0 1 0
.....................TGTTGAGTATTCAAACGCT................................................................................................................................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

TGGTTAAACGCGTTGGTTTTCAGAACTCATAAGTTGACGACGACGTTTGGCATACTGACTAAAAAAGTTAAACTAGTTTCGGATCGCTAATGGAGGGATTCTTGAAATATGGTCGAATGTTTATGCTTGTATATGTGGGCCTATAGGTAAACGTATAAACTTACCGTGTCGTTATCGAAGCTAATGGATCCTAAATGATAATGATATTTCGCGATCGCTTTCTAAAGGTTGAGGGGTATGGCATCTATCACATTAGTGTGTCATAGATGTATATATGTTTATATATATATAGACTAGACTAGACTAGGCTATTTATCCTTCCTCCTAGCCTTCGCTCGCACGTCTCGCTCCCCACTCCTTACG
**************************************************(((((..(((.....)))....((((...((.(((((................(((((((...(((..((((((((((.((((........))))...))))..))))))...)))..(((....))).........(((......)))....))))))))))))))....))))..........))))).(((((((.(((......))).)))))))(((((((....))))))).((((.((((......)))).)))).************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M024
male body		 M053
female body
 GSM343915
embryo
 M023
head
..................................................................................................................................ATATGTGGGCCTAAA.......................................................................................................................................................................................................................... 15 1 6 2.67 16 16 0 0 0 0 0 0 0
..............................................................................TCGGATCGCTACTGGATGAA......................................................................................................................................................................................................................................................................... 20 3 3 1.00 3 0 3 0 0 0 0 0 0
...............................................................................................................................GGCATATGTGGGCCTA............................................................................................................................................................................................................................ 16 2 13 0.46 6 6 0 0 0 0 0 0 0
..............................................................................TCGGATCGCTACTGGAT............................................................................................................................................................................................................................................................................ 17 2 6 0.33 2 0 1 1 0 0 0 0 0
..............................................................................TCGGATCGCTATTGGATG........................................................................................................................................................................................................................................................................... 18 2 3 0.33 1 0 1 0 0 0 0 0 0
..................................................................................................................................ATATGTGGGCCTAAAA......................................................................................................................................................................................................................... 16 2 20 0.30 6 6 0 0 0 0 0 0 0
..............................................................................TCGGATCGCCACTGGA............................................................................................................................................................................................................................................................................. 16 2 11 0.27 3 0 0 3 0 0 0 0 0
.........................................................................................................................................................................................................................CTTTCTAAAGGTTAGGGG................................................................................................................................ 18 2 4 0.25 1 0 0 0 1 0 0 0 0
..............................................................................TCGGATCGCCACTGGAT............................................................................................................................................................................................................................................................................ 17 3 20 0.20 4 0 0 4 0 0 0 0 0
..............................................................................TCGGATCGCCACTGGATG........................................................................................................................................................................................................................................................................... 18 3 17 0.18 3 0 0 3 0 0 0 0 0
.................................CTGACGACGACGTTTTGCAGA..................................................................................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0
..........CGTTGGCTTTCAGAATTCA.............................................................................................................................................................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 0 0 1 0 0 0
................................................................................................................................GCATATGTGGGCCTAAA.......................................................................................................................................................................................................................... 17 2 9 0.11 1 1 0 0 0 0 0 0 0
..................................................................................................................................................................................CGCTAATGGGTCTTAAATG...................................................................................................................................................................... 19 3 20 0.10 2 0 0 0 0 0 2 0 0
...........................................................................................................................................................................................................................................................................................................................................TCGCGCGCACGTCGCGC............... 17 2 10 0.10 1 0 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................................................................................................................CTAGCCTTCTCGCGCACAT.................... 19 3 11 0.09 1 0 0 0 0 0 0 1 0
....................................ACGACGACGTTTTGCA....................................................................................................................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 1 0 0 0 0
..............................................................................TCGGACCGCTAATGGATGA.......................................................................................................................................................................................................................................................................... 19 3 12 0.08 1 0 0 0 0 0 0 0 1
..................................TGACGACGACGTTTCG......................................................................................................................................................................................................................................................................................................................... 16 1 12 0.08 1 0 0 0 1 0 0 0 0
...............................................TGGCATGCGGACTAAA............................................................................................................................................................................................................................................................................................................ 16 2 14 0.07 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................GCTTGCTAAAGGTTG.................................................................................................................................... 15 1 14 0.07 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................................TCATTCCTTCTAGCCTT............................... 17 2 15 0.07 1 0 0 0 1 0 0 0 0
.............................................................................TTGGGACCGCTACTGGAGG........................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0
..............................................................................TCGGACCGCTACTGGATGG.......................................................................................................................................................................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0 0 0 0
........................................................................................GATGGAGGGATTCGT.................................................................................................................................................................................................................................................................... 15 2 20 0.05 1 0 0 0 1 0 0 0 0
................................................................................................................................GCATATGTGGGCCTAAAA......................................................................................................................................................................................................................... 18 3 20 0.05 1 1 0 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:5171905-5172267 - dsi_25317 ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTTTTC-AATTTGATCAA------------------------------------------A--GCCT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACCAG--CT-----TACAAATACGAA-----C--------AT--------AT--ACACCCGGAT--ATC--CATTTGCATA-------------------------------TT----TGAA----TGGCACAGCAATAG--CTTC-GATTACC----TAGGATTT----------------AC-TA---TTACTA--TAAAGCG--------------------------------------------------------------------------------------CTAGCGAAAGATT-------TCC---------------AACTCCCCATACCGTAGATAGTG-----TAATCACAC--------------------------------------------------------------------------------------------------------------------------AGTATCTACA------------------------------------------------------------------------------TATATA-------CAAA--TATATATATA-TCTGA------------TCTGAT--CTGATCCGATAAATAG----G------A--------------------------------------------------AGGAGGATCGG-------------------AAGC-GAGCGTGCAGAGCGA-------GGGGTGAGGAATGC
droSec2 scaffold_4:1220009-1220358 + ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCTGCTGCAAAACGTATGACTGATTTTTTC-AATTTGATCAA------------------------------------------A--GCCT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACCAG--CT-----TACAAATACGAA-----C--------AT--------AT--ACACCCGGAT--ATC--CATTTGCATA-------------------------------TT----TGAA----TGGCACAGCAATAG--CTTC-GATTACC----TAGGATTT----------------AC-TA---TTACTA--TAAAGCG--------------------------------------------------------------------------------------CTAGCGAACGATT-------TCC---------------AACTCCCCATACTGTAGATCGTG------AATCACAC--------------------------------------------------------------------------------------------------------------------------AGTATCTACA------------------------------------------------------------------------------TATATA-------CAAA--TATATA--TA-----------------------T--CTGATCCGATAAATAG----G------A--------------------------------------------------AGGAGGATCGG-------------------GAGT-GAGCGTGCAGAGCGA-------GGGGTGAGGAATGC
dm3 chrX:5537095-5537478 - ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTTT-C-AATTTGATCAA------------------------------------------A--GCCT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACCAG--CT-----TACAAATACGAA-----C--------AT--------AT--ACACCCGGAT--ATC-CCATTTGCATA-------------------------------TT----TGAA----TGGCACGGCAATAG--CTCC-GATTACC----TTGGATTT----------------AC-------TATAG--TAAAGCG--------------------------------------------------------------------------------------CTAGCGAAAGATT-------TCC---------------AACTCACGATACCGTAGATAGTG-----TAATCACAC---------------------------------------------------------------------------------AGCTGG-----------------TCG-------------AAAGTATCTACA---------------------------------CA-------------------------------------------TATATAA---ATACAAA--TATA----TA-TACA-ATATATATCTGATCTGAT--CTGATCCGATAGATAG----G------G--------------------------------------------------AGGAGGATCGG-------------------GAGC-GAGCGTGCTGAGCGA-------GGGGAAAGGAATGC
droEre2 scaffold_4690:2888070-2888459 - ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCAGCTGCAAACCGTATGACTGATTTTT-C-ATTTTGAGCAA------------------------------------------A--GCAT-----AGCGATTACCTCCCTAAGATACCAA--CTTTATACCAG--CT-----TACAAGTACGAA-----C--------ATATACATATAT--ACAACCGGAT--ATC--CATTTGCATA--------------------------------T----TGAA----TGGCACGGCAATAG--CTCC-GATTACC----TACGATT------------------------A-TATAG--TAGAGCG--------------------------------------------------------------------------------------CTAGCGAACGTGT-------TCC---------------AACTCCCGATCCCGTAGATAGTG-----TCCTCACAC-----------------------------------------------------------------AC--------------AGTTGGCCAACCCA----------CGAG--TA-AGCCTGAAAGTATCTACA---------------------------------------------------------------------------------------------AC--TACA----TA-TA------------------------CGATCCGATAGATAG----G------G----------------AGCGGCA--------G----ACA---------GGAGGAGGATCGGCGCA---G-------GTG-AAGC-GAGAG--------GA-------GAGGAGAGGAATGC
droYak3 X:2932199-2932574 + ACCAA-TTTGCGAAACC-AAAAGTCTTGAGA--ATATTCAACTGCTGCTGCAAACCGTATGACTGATTTTT-C-AATTTGAGCAA------------------------------------------A--GCAT-----AGCGATTACCTACCTAAGA-----A--CTTTATACCAG--CT-----TACAACTACGAA-----C--------GCATTCTCGTAT--ACACCCGGAT--ATC--CATTTGCGTA-------------------------------TT----TGAA----TGGCACGGCAATAG--CGCC-GATTATC----TAGGATTA----------------C------A-TATAG--TAGAGCG--------------------------------------------------------------------------------------CTAGCAAACG------------------------------------ATCCCGTAGATAGTTTTTTGTACTCAAACCGCTCTAG------------------------------------------------------------------------------------------------CCGAT-TTA--GCCTGAAAGTATTTACA------------------------------------------------------------------------------TATATA-------CATACG--TACATATA-TCCGA-----------------T--CTGATCCGATAGATAG----G------A----------------ACAGGA--------------ACA---------GGAGGAGGATCGG-------------------CGG----------------A--G--GAG-CGAAAGGAATGC
droEug1 scf7180000409095:576556-576913 - ACCAA-TCTGCGAAACC-AAAAGTCTTAAAA----CCTAAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-AAGTTGAGCAA------------------------------------------A--CCCT-----AGCCAGTACCTCCCTAAGA-----A--CTTTATACTAG--CT-----TACAAAAACAGA----AT--------AT----------ATACA--CGGATATATA--TATATATATA-------------------------------TA----TGAA----TGGCAAGGCAATAA-TCTAC-GATTCT------------------------------------A-TATAG---------------------------------------------------------------------------GACCTATAACGTATAAAACTCTAGAA---GTGT----------------------------------GACAGTAAATAGTG-----TATACGCGC---------------------------------------------------------------------------------TGTTGG-----------------CCGAA-CTA-AGCC-AA-----------------------------------------------------------------------------------------------------------A--AAT-----------------------------AT-TCATCCGATAGACAG----T------T-----AGATAACAGAGAAGAAGT--------GGGAAAGC---------AGAGGAGGATCGG-------------------GAGC-CAGAG---AGAGAGA-------GAAGAGAGGAATGC
droBia1 scf7180000302069:286844-287153 + ACCAA-TTTGCGCAACC-AAAAGTCTTAATC----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-ACGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTATTTCCCTAAGA-----A--CTTTACACTAG--CT-----TACAAGCAGATA-----T--------AT----------ACAGACCC---------------------------------GCATTTAAGGCCGGATATATA----TGAG----TGGCAAGGCATTAA--ATCC-GGTTATA----CAGGACC------------------------A-TATCG--TAAAGCG--------------------------------------------------------------------------------------CTTGCA---GTGT-------TGC---------------ATC----------------------------------CGCGCTC-------------------------------------------------------------------------------------------------CCGAT-CTA-AGC-----------------------------------------------------------------------------------------------------------ATATA--GAT-----------------------------AT-TAATCTGAAAGATAG----G------G----------------A------------------GAGC---------AGAGG-GGGTCGG-------------------GAGC-GAGAG---------A-------GCAGAGAGGAATGC
droTak1 scf7180000415289:603535-603898 + ACCAA-TCTGCGCAACC-AAAAGTCTTTAAC----CTTCAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-AAGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTACCTCCCTAAGT-----A--CTTTATACTAG--CT-----TACAAGCATAAACATAGT--------AT----------ATAAACCC---------------------------------GCATTTACGGCCGGATATATAT-TACGAA----TGGCAAGGCAATAG--ATCC-AAATATATGCATTGGATTG----------------AT-T---A-TATCG--TAAAAAG--------------------------------------------------------------------------------------CTAGAA---CTGCTGCATTTTGA---------------AAC------TCCCGTAGATAGTG-----T----------------------------------------------------------------------------------------------------------------------CTA-----------------CACAT---------------------------TAGCA-------------------------------------------TATATA-------CATATA--TATA-----------------------------T-TTATCTGATAGATAG----G------G----------------AAGAGCA--------GAG-GAGC---------AGAGAAGGGTCGG-------------------AAGA-GA-----CAGAGAGA-------GAAGCAAGGAATGC
droEle1 scf7180000491001:919939-920275 + ACCAA-TCTGCGAAACCTAAAAGTCTTATAA----ATTCAACTGCTGCTGCAAACCTTATGACTGATTTAT-A-ACGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACTAG--CT-----TACAAATAGAGA-----T--------AT----------ATACTCGC---------------------------------GCATATACGGCCGCATATATT----TGAA----TGGCAAGGCAATAAAACTCC-GATTATA----TAGCATT------------------------G-TATAG--TAAAACG--------------------------------------------------------------------------------------CTAGAAGAAGTGT-------TGC---------------CTCAACCAGTTCCGTAGATAGTG-----T----------------------------------------------------------------------------------------------------------------------CTATAAC-----AATTACTA-----------------------------------------------------------------------------------------------------------CA-TCCGA----------------------TATCTGATAGATAG----G------G----------------GA--GGA--------G--AGAGC---------AGAGGAGAATCGG-------------------AAGC-CAGAG---------A-------GAAGTGAGGAATGC
droRho1 scf7180000779976:742563-742898 + ACCAA-TTCGCGCAACC-AAAAGTCTTAAA-----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-ACGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTACCTCCCTAAGA-----A--CTTTACACTAG--CT-----TACAAATAGAGA-----T--------AT----------ATACTCGC---------------------------------GCATATACGGCCGGATATATT----TGAA----TGACAAGTCAATAG--CTCC-GATTATA----TAGGACT------------------------G-TATTG--TAAAACG--------------------------------------------------------------------------------------CTAGCA---GAGTT------GCCAGATCAGCCAGTAGAAA-------GCCCGTATAAAGTG-----T----------------------------------------------------------------------------------------------------------------------CTATAAC-----TGT----------------------------------------------------------------------------------------------------------------T-------------------------ATTGTATCCGATAGATAG----A------G----------------AGAAAGA--------GAGAGCGC---------AGAGGAGAATCGG-------------------AAGC-GAGAG---------A-------GCAGAGAGGAATGC
droFic1 scf7180000454072:2574644-2574984 + ACCAA-TTTGCGCAACC-AAAAGTCTTAGT-----ATTTAACTGCTGCTGCAAACCGAATGACTGATTTAT-C-ACGTTGAGCCA------------------------------------------A--TCGT-----AGCGATTACCTCCCTAGGA-----A--CTTTATACAAG--CT-----TACAAAAACATA-----T--------AT----------ATAATTAC------------------G-----------------TATACGGC-GGGTGTACA----TGAA-------------AGTAA--CTCC-GATCGCA----CTGGA--------------AGCTTGCTCGTCAT--TAG--TAGAACG---------------------CTAAGC---------------------------------------------------------CGCTAGAA---GTGT-------T-C---------------AAC---------CGCATCAATTG-----TATTC-CGC---------------------------------------------------------------------------------GGCAGG-----------------TCGAGTCTA----------------------------------------------------------------------------------------------------------------------------TA-ACCGAA-----------------ATTGTATCTGACAGATAG----G------G----------------AAGCGA--------------GAA---------GGA-GAGAGCCGG-------------------GAGC-GAGCGAGC-GAG--A-----GAG-AGAGAGGAATGC
droKik1 scf7180000302698:1126545-1126951 + ACCAAAATTGCGCAACC-AAAAGTCTTGAACAAATAATCAACTGCTGCTGCAAACCGTATGACTGATTTAT-AACATTTGAGCGT------------------------------------------A--CTGT-----AGCGATTACCTCCCTAAGA-----AAACTTTATACTAA--CT-----TACAACCAAAAAAGAAATA--TATATATATATATATAT--ACAAGT---------------------------------GCATATACGGCCGCATATATA----GGAA----TGGCAGGGCAATAA--CTTTCAACTTT------------AAC-----------------AA--------GTATAAAG-----------------------CCAAGCAAC-------------------------------------------------------CCTAGAA---GCTT-------TGC---------------A-----------------TAGT-------ACCCAAA--------------------------------------AAAGAAATCCCCTCAACA----T-----ATAACCGATAAACAATA---------TTC---------------------------------------AT---------------------------TTGCCG-------------------------------------------ATATA-------CGA-----------CA-AACGA--------------------TATATCCGATAGATAG----C------A-------------GAGAGAGAGCGAGTAAAAG--AGAGC---------AGAGGA-AATCGA-------------------TAGC-GAGGC------GCGA-----GAG-AGAGAGGAATGC
droAna3 scaffold_13117:2000668-2001006 + ACCAA-TTTGTGCAACC-AAAAGTCTTGAA-----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTTC---TCGTTCAACCA------------------------------------------A--CA-G-----CTTGATTACCTCCTTAGGC-----A--CTTTGTACTAC--CTAGCGCTATATATACTAT-----A--------AT--------AT--AAACCTAT----ATA--CACACCTATA-------------------------------TA----CAAA----TGGAAAACCAATAA--CTCC-GCCTTT-------GG---------------AGCTAGT-------TCTTA--TAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCTAGAATCTAACCCAGAGACCAGCTAAA----------------------------------------------------------------------------------------------------AACTAGCATTAAAGAGCCCCAAATATCAGCGAGCA-------------------------------------------TATCTAAGGGAACCAAA--CACA----TA-CCCGAA---------------------TATCTGACAGATCT----G---------------------------------------------------------------ACCGA-------------------GA--------------GCG-------AG-AGCGGGGAATGC
droBip1 scf7180000396425:66837-67151 - ACCAA-TTTGTGAAACC-AAAAGTCTTGAA-----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTT--C-TCGTTGAACCG------------------------------------------A--CA-G-----CTTGATTACCTCCTTA-GC-----G--CTTTATAT-AC--CG-----TA------------------------TT--------AT--AAACCT--TTATATA--TATACCTTTA-------------------------------TA----CAAA----TGGAAAACCAATAA--CTCC-GACTTT-------GG---------------AGCTAGTT----CT--TTA--TAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCTAGAATCTAACCCAGAAA---GAAAAA----------------------------------------------------------------------------------------------------AAAAAAAATTTAAAGGCCTTAAGTATCAGCGAGCA-------------------------------------------TATCTAAGGAAAAAAAA--CATA----TA-TCCGAA---------------------TATCTGGCAGATC----------------------------------------------------------------------------------------------------------AGAGCG-------AG-AGCGGGGAATGC
dp5 XL_group1a:8152668-8153084 - ACCAA-TTAGCCTAACCGAAAAGTCTTGAAA--A-TATCAACTGCTGCTGCAAACTGTATGACTGATTTATCC-ACGTTGATCAACCAACAGA-------AT-------------TGGGGAACAGAAACCCCCCAGAAAACTAACTAACTCCTTAAGA-----ACTCTTTATAT-AGCCTTTACAC-----CCAAGA-C-A----ACCTTAG--------------CC-------------ACCTTTTGGAAG-------------------------------AA----TGAA----TGGCTTG-CTATCG--CTAGAAGCT------------TTAAC-----------------TA---TT--TA--TTGA-----------------------GCCGAGTAGCCAA--------------------------------------------------------------------------------------------------------GTAGTCAG-------------------------------------------CTAACACTTGCAAGCAATCA-ATCAATCAATCAATCAATCAATCGATAAA--------------TCA---------------------------------------AT---------------------------CAGCAGATATACAAAAAATACACATAGAAGAGGAGCAGATACCTCACAGATATA-------CATACA--TACGT-----------------------------------TGATACA---------------------------------------------------------------------CAAGCGA-------------------GAGT-CATCGTCAGGACCCTGGGG--AG--AGGAGGAATGC
droPer2 scaffold_15:512003-512412 - ACCAA-TTAGCCTAACCGAAAAGTCTTGAAA--A-TATCAACTGCTGCTGCAAACTGTATGACTGATTTATCC-ACGTTGATCAACCAACAGA-------AT-------------TGGGGAACAGAAACCCCCCAG---AAAACTAACTCCCCTAAGA-----ACTCTTTATAT-AGCCTTTACAC-----CCAAGA-C-A----ACCTTAG--------------CC-------------ACCTTTTGGAAG-------------------------------AA----TGAA----TGGCTTG-CTATCG--CTAGAAGCT------------TTAAC-----------------TA---TT--TA--TTGA-----------------------GCCGAGTAGCCAA--------------------------------------------------------------------------------------------------------GTAGTCAG-------------------------------------------CTAACACTTGCAAGCAATCA-ATCAATC----TATCAATCAATCGATAAA--------------TCA---------------------------------------AT---------------------------CAGCAGATATACAAAAAATACACATAGAAGAGGAGCAGATACCTCACAGATATA-------CATACA--TACGT-----------------------------------AGATACA---------------------------------------------------------------------CAAACGA-------------------GAGT-CATCGTCAGGACCCTGGGG--AG--AGGAGGAATGC
droWil2 scf2_1100000004515:1899155-1899488 - ACCAA-ATTGCT-AACT-AAAAGTCTTAAA-----TCAAAACTACTGCCGCAAACTGTATGACTGATTTTTTC-TCGATTAACCA---AACACTTAAAGCATTATCGAAACAAAATAAAAAACAA--A--ACCTA----AAATATTACCTCCCAATAA-----A--CTTTATAGGCA--TT-----TGC-------------------------------------------------------------CAATTATATTCTAACTCTTACTCGGCTAGAACTAAT----TAAT----TGG------------------------------------------------------------------------------------------------GCTAGTTAAACCAGTATAAAATAACAAAACAAAACCAAAATACTAGAATCTATAATACATAAAAAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA----AA-CCCAAA------------CA--A--TTGATCAGATCGA-----------------------------------------------------------------------ACTGGA-------AAAGATCTTC-AAGT-GAGAC---------A-----GAG-GAAGAGGAATGC
droVir3 scaffold_12970:4653508-4653819 + ACCAA-TTTTCT-AACT-AAAAGTCTTAAA-----ACTAAACT---GCTGCAAACCGAATGACTGATTTTT-C-----TGAACAT------------------------------------------A-----T-----AAAATTTACCTC-TAACTA-----A--CTTTATACCTA--TC-----AAT-ACCATAAACAAA-A--------AT------------CAGCCCA-----AAA--CAT---------------------------------ACATATA----TGCGTGAAGATCAAATCATTTA--CTA-------T------------ATTAAGTATTAGATCTTGGC----C-------------------------------------------T--------------------------------------------------------------------------------------------------------TAAAGTAGCTAGCT-------------------------------------------TTC-------------------------------AAAT--------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGACAACAAAGCAACTGAACAGTA----------ACAAGAA--------GTGACCGC---------AAACCAGGCTTGG--------AAGGATTTCAGTAGCTGTACGTAGCGGGCGC--G--GAG-AGTGAGGAATGC
droMoj3 scaffold_6473:7660279-7660646 + ACCAA-TTTGCT-AACA-AAAAGTCTAAAA-----AATCAACT---GCTGCAAACCGAATGACTGATTTTT-C-----TGAACA-----------------------------------------------TTT-----AATACTTACCTCCTAACGA-----A--CTTTATATCAAT-CT-----TATCAATCAGCG-----T--------AT----------ATATATATATATATATA--TATATATATA-------------------------------TATATATGCGAAAATCTCGAATCAAGTA--C--------ATA----TATCAAC------------------------A-TATAT--TATAGTTATATTGGACTTCACGCGGAA-CGAAGT---------------------------------------------------------AGTTAGAA---------------------------------------------GTAGATAGAG-----CTT------------------------------------------------------------------------------------------TGACAAATATCTTTAGCTATTCG-------------AAAACAACAACA---------------------------------------------------------------------------------------------AC--AAAA----TAAAAC-AA-----------------------------AA-TAA----A--ACAAAACATAA----------ACAAACA-------------------------GTGTAAGAAACAGTGCATCCG-----------AT-T-AAGT----------TGAGGAGAGCAGAGAGGAATGC
droGri2 scaffold_15203:10642135-10642509 - ACCAA-TTTGCT-AACT-AAAAGTCTTAAC-----ATTAAACTGCTGCTGCAAACTGAATGACTGATTTAT------ATGAACAA------------------------------------------A-----T-----AGAAATTACCTCCTAAAGA-----A--CTTTATACTTC--TCGAAAC-----AAAAGA-A-A----ACTTTAA--------------ACATACCTAC--ATA--CATATGTATA-------------------TGC---------CA----AGAA----TGGAAAATCATTTA--CTAA-AATATT-------AG---------------GTATTGTC----TT--TAG--TAATACA-------ACTTAACACAGC-------------------------------------------------------------------------------------------------------------CCAAATACAGTAGATAGCT-------------------------------------------ATT-------------------------------AAAT--------------ATTTGACAAACCTATTCA----------------GCATTAAAG----------------------AGCC----------------A-------------------------------------------TATCTCCC-------AA--AAAC----TAACAC-AA-----------------------------AAACA--------------------------------AAAA--------GAAAACAAAAAACAATAATA-AAAAAACAGCATATCAG-----------TTGT-AAGTC-GCTG-GCGA--G--GAG-ATTAAGGAATGC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTTTTC-AATTTGATCAA------------------------------------------A--GCCT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACCAG--CT-----TACAAATACGAA-----C--------AT--------AT--ACACCCGGAT--ATC--CATTTGCATA-------------------------------TT----TGAA----TGGCACAGCAATAG--CTTC-GATTACC----TAGGATTT----------------AC-TA---TTACTA--TAAAGCG--------------------------------------------------------------------------------------CTAGCGAAAGATT-------TCC---------------AACTCCCCATACCGTAGATAGTG-----TAATCACAC--------------------------------------------------------------------------------------------------------------------------AGTATCTACA------------------------------------------------------------------------------TATATA-------CAAA--TATATATATA-TCTGA------------TCTGAT--CTGATCCGATAAATAG----G------A--------------------------------------------------AGGAGGATCGG-------------------AAGC-GAGCGTGCAGAGCGA-------GGGGTGAGGAATGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................TACCTCCCTAAGA-----A--CTTTATACCAG--.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000000000
droSec2
ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCTGCTGCAAAACGTATGACTGATTTTTTC-AATTTGATCAA------------------------------------------A--GCCT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACCAG--CT-----TACAAATACGAA-----C--------AT--------AT--ACACCCGGAT--ATC--CATTTGCATA-------------------------------TT----TGAA----TGGCACAGCAATAG--CTTC-GATTACC----TAGGATTT----------------AC-TA---TTACTA--TAAAGCG--------------------------------------------------------------------------------------CTAGCGAACGATT-------TCC---------------AACTCCCCATACTGTAGATCGTG------AATCACAC--------------------------------------------------------------------------------------------------------------------------AGTATCTACA------------------------------------------------------------------------------TATATA-------CAAA--TATATA--TA-----------------------T--CTGATCCGATAAATAG----G------A--------------------------------------------------AGGAGGATCGG-------------------GAGT-GAGCGTGCAGAGCGA-------GGGGTGAGGAATGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTTT-C-AATTTGATCAA------------------------------------------A--GCCT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACCAG--CT-----TACAAATACGAA-----C--------AT--------AT--ACACCCGGAT--ATC-CCATTTGCATA-------------------------------TT----TGAA----TGGCACGGCAATAG--CTCC-GATTACC----TTGGATTT----------------AC-------TATAG--TAAAGCG--------------------------------------------------------------------------------------CTAGCGAAAGATT-------TCC---------------AACTCACGATACCGTAGATAGTG-----TAATCACAC---------------------------------------------------------------------------------AGCTGG-----------------TCG-------------AAAGTATCTACA---------------------------------CA-------------------------------------------TATATAA---ATACAAA--TATA----TA-TACA-ATATATATCTGATCTGAT--CTGATCCGATAGATAG----G------G--------------------------------------------------AGGAGGATCGG-------------------GAGC-GAGCGTGCTGAGCGA-------GGGGAAAGGAATGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGG-------------------GAGC-GAGCGTGCTGAGCGA-------GG............2415.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................TATAG--TAAAGCG--------------------------------------------------------------------------------------CTAGCGAAAGATT-------T....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACA---------------------------------CA-------------------------------------------TATATAA---ATACAAA--C........................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCCGATAGATAG----G------G--------------------------------------------------A......................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATACCGTAGATAGTG-----TAATCACAC---------------------------------------------------------------------------------AGCT.........................................................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGG-------------------GAGC-GAGCGTGCTGAGCGA-------G.............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................TTGAGT----ATTCAACTGCTGCTGCAAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................GAA-----C--------AT--------AT--ACACCCGGAT--ATC-CC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TAAGA-----A--CTTTATACCAG--CT-----TC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGATAG----G------G--------------------------------------------------AGGAGG.................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGTG-----TAATCACAC---------------------------------------------------------------------------------AGCTGG-----------------TCG-------------A.....................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGG-------------------GAGC-GAGCGTGCTGAGCGA-------GG............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCGG-------------------GAGC-GAGCGTGCTGAGCGA-------GG............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................TAAGA-----A--CTTTATACCAG--CT-----GC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................................................................................................................................TAAGA-----A--CTTTATACCAG--CT-----GCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
droEre2
ACCAA-TTTGCGCAACC-AAAAGTCTTGAGT----ATTCAACTGCAGCTGCAAACCGTATGACTGATTTTT-C-ATTTTGAGCAA------------------------------------------A--GCAT-----AGCGATTACCTCCCTAAGATACCAA--CTTTATACCAG--CT-----TACAAGTACGAA-----C--------ATATACATATAT--ACAACCGGAT--ATC--CATTTGCATA--------------------------------T----TGAA----TGGCACGGCAATAG--CTCC-GATTACC----TACGATT------------------------A-TATAG--TAGAGCG--------------------------------------------------------------------------------------CTAGCGAACGTGT-------TCC---------------AACTCCCGATCCCGTAGATAGTG-----TCCTCACAC-----------------------------------------------------------------AC--------------AGTTGGCCAACCCA----------CGAG--TA-AGCCTGAAAGTATCTACA---------------------------------------------------------------------------------------------AC--TACA----TA-TA------------------------CGATCCGATAGATAG----G------G----------------AGCGGCA--------G----ACA---------GGAGGAGGATCGGCGCA---G-------GTG-AAGC-GAGAG--------GA-------GAGGAGAGGAATGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-TA------------------------CGATCCGATAGATAG----G------G----------------AGC......................................................................................................2311.0010100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-AGCCTGAAAGTATCTACA---------------------------------------------------------------------------------------------AC--TAC......................................................................................................................................................................................2411.0010000010
..........................................................ATGACTGATTTTT-C-ATTTTGAGCAA------------------------------------------A--......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000
droYak3
ACCAA-TTTGCGAAACC-AAAAGTCTTGAGA--ATATTCAACTGCTGCTGCAAACCGTATGACTGATTTTT-C-AATTTGAGCAA------------------------------------------A--GCAT-----AGCGATTACCTACCTAAGA-----A--CTTTATACCAG--CT-----TACAACTACGAA-----C--------GCATTCTCGTAT--ACACCCGGAT--ATC--CATTTGCGTA-------------------------------TT----TGAA----TGGCACGGCAATAG--CGCC-GATTATC----TAGGATTA----------------C------A-TATAG--TAGAGCG--------------------------------------------------------------------------------------CTAGCAAACG------------------------------------ATCCCGTAGATAGTTTTTTGTACTCAAACCGCTCTAG------------------------------------------------------------------------------------------------CCGAT-TTA--GCCTGAAAGTATTTACA------------------------------------------------------------------------------TATATA-------CATACG--TACATATA-TCCGA-----------------T--CTGATCCGATAGATAG----G------A----------------ACAGGA--------------ACA---------GGAGGAGGATCGG-------------------CGG----------------A--G--GAG-CGAAAGGAATGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...................................................................................................................................................................................................................................................................................................................AATAG--CGCC-GATTATC----TAGGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATAGATAG----G------A----------------ACAGGA--------------AC...................................................................................1911.00100000010000
droEug1
ACCAA-TCTGCGAAACC-AAAAGTCTTAAAA----CCTAAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-AAGTTGAGCAA------------------------------------------A--CCCT-----AGCCAGTACCTCCCTAAGA-----A--CTTTATACTAG--CT-----TACAAAAACAGA----AT--------AT----------ATACA--CGGATATATA--TATATATATA-------------------------------TA----TGAA----TGGCAAGGCAATAA-TCTAC-GATTCT------------------------------------A-TATAG---------------------------------------------------------------------------GACCTATAACGTATAAAACTCTAGAA---GTGT----------------------------------GACAGTAAATAGTG-----TATACGCGC---------------------------------------------------------------------------------TGTTGG-----------------CCGAA-CTA-AGCC-AA-----------------------------------------------------------------------------------------------------------A--AAT-----------------------------AT-TCATCCGATAGACAG----T------T-----AGATAACAGAGAAGAAGT--------GGGAAAGC---------AGAGGAGGATCGG-------------------GAGC-CAGAG---AGAGAGA-------GAAGAGAGGAATGCSizeHit CountTotal NormTotal
No Reads
droBia1
ACCAA-TTTGCGCAACC-AAAAGTCTTAATC----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-ACGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTATTTCCCTAAGA-----A--CTTTACACTAG--CT-----TACAAGCAGATA-----T--------AT----------ACAGACCC---------------------------------GCATTTAAGGCCGGATATATA----TGAG----TGGCAAGGCATTAA--ATCC-GGTTATA----CAGGACC------------------------A-TATCG--TAAAGCG--------------------------------------------------------------------------------------CTTGCA---GTGT-------TGC---------------ATC----------------------------------CGCGCTC-------------------------------------------------------------------------------------------------CCGAT-CTA-AGC-----------------------------------------------------------------------------------------------------------ATATA--GAT-----------------------------AT-TAATCTGAAAGATAG----G------G----------------A------------------GAGC---------AGAGG-GGGTCGG-------------------GAGC-GAGAG---------A-------GCAGAGAGGAATGCSizeHit CountTotal NormTotal
No Reads
droTak1
ACCAA-TCTGCGCAACC-AAAAGTCTTTAAC----CTTCAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-AAGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTACCTCCCTAAGT-----A--CTTTATACTAG--CT-----TACAAGCATAAACATAGT--------AT----------ATAAACCC---------------------------------GCATTTACGGCCGGATATATAT-TACGAA----TGGCAAGGCAATAG--ATCC-AAATATATGCATTGGATTG----------------AT-T---A-TATCG--TAAAAAG--------------------------------------------------------------------------------------CTAGAA---CTGCTGCATTTTGA---------------AAC------TCCCGTAGATAGTG-----T----------------------------------------------------------------------------------------------------------------------CTA-----------------CACAT---------------------------TAGCA-------------------------------------------TATATA-------CATATA--TATA-----------------------------T-TTATCTGATAGATAG----G------G----------------AAGAGCA--------GAG-GAGC---------AGAGAAGGGTCGG-------------------AAGA-GA-----CAGAGAGA-------GAAGCAAGGAATGCSizeHit CountTotal NormTotal
No Reads
droEle1
ACCAA-TCTGCGAAACCTAAAAGTCTTATAA----ATTCAACTGCTGCTGCAAACCTTATGACTGATTTAT-A-ACGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTACCTCCCTAAGA-----A--CTTTATACTAG--CT-----TACAAATAGAGA-----T--------AT----------ATACTCGC---------------------------------GCATATACGGCCGCATATATT----TGAA----TGGCAAGGCAATAAAACTCC-GATTATA----TAGCATT------------------------G-TATAG--TAAAACG--------------------------------------------------------------------------------------CTAGAAGAAGTGT-------TGC---------------CTCAACCAGTTCCGTAGATAGTG-----T----------------------------------------------------------------------------------------------------------------------CTATAAC-----AATTACTA-----------------------------------------------------------------------------------------------------------CA-TCCGA----------------------TATCTGATAGATAG----G------G----------------GA--GGA--------G--AGAGC---------AGAGGAGAATCGG-------------------AAGC-CAGAG---------A-------GAAGTGAGGAATGCSizeHit CountTotal NormTotal
No Reads
droRho1
ACCAA-TTCGCGCAACC-AAAAGTCTTAAA-----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTAT-C-ACGTTGAGCAA------------------------------------------A--CCAT-----AGCGATTACCTCCCTAAGA-----A--CTTTACACTAG--CT-----TACAAATAGAGA-----T--------AT----------ATACTCGC---------------------------------GCATATACGGCCGGATATATT----TGAA----TGACAAGTCAATAG--CTCC-GATTATA----TAGGACT------------------------G-TATTG--TAAAACG--------------------------------------------------------------------------------------CTAGCA---GAGTT------GCCAGATCAGCCAGTAGAAA-------GCCCGTATAAAGTG-----T----------------------------------------------------------------------------------------------------------------------CTATAAC-----TGT----------------------------------------------------------------------------------------------------------------T-------------------------ATTGTATCCGATAGATAG----A------G----------------AGAAAGA--------GAGAGCGC---------AGAGGAGAATCGG-------------------AAGC-GAGAG---------A-------GCAGAGAGGAATGCSizeHit CountTotal NormTotal
No Reads
droFic1
ACCAA-TTTGCGCAACC-AAAAGTCTTAGT-----ATTTAACTGCTGCTGCAAACCGAATGACTGATTTAT-C-ACGTTGAGCCA------------------------------------------A--TCGT-----AGCGATTACCTCCCTAGGA-----A--CTTTATACAAG--CT-----TACAAAAACATA-----T--------AT----------ATAATTAC------------------G-----------------TATACGGC-GGGTGTACA----TGAA-------------AGTAA--CTCC-GATCGCA----CTGGA--------------AGCTTGCTCGTCAT--TAG--TAGAACG---------------------CTAAGC---------------------------------------------------------CGCTAGAA---GTGT-------T-C---------------AAC---------CGCATCAATTG-----TATTC-CGC---------------------------------------------------------------------------------GGCAGG-----------------TCGAGTCTA----------------------------------------------------------------------------------------------------------------------------TA-ACCGAA-----------------ATTGTATCTGACAGATAG----G------G----------------AAGCGA--------------GAA---------GGA-GAGAGCCGG-------------------GAGC-GAGCGAGC-GAG--A-----GAG-AGAGAGGAATGCSizeHit CountTotal NormTotal
No Reads
droKik1
ACCAAAATTGCGCAACC-AAAAGTCTTGAACAAATAATCAACTGCTGCTGCAAACCGTATGACTGATTTAT-AACATTTGAGCGT------------------------------------------A--CTGT-----AGCGATTACCTCCCTAAGA-----AAACTTTATACTAA--CT-----TACAACCAAAAAAGAAATA--TATATATATATATATAT--ACAAGT---------------------------------GCATATACGGCCGCATATATA----GGAA----TGGCAGGGCAATAA--CTTTCAACTTT------------AAC-----------------AA--------GTATAAAG-----------------------CCAAGCAAC-------------------------------------------------------CCTAGAA---GCTT-------TGC---------------A-----------------TAGT-------ACCCAAA--------------------------------------AAAGAAATCCCCTCAACA----T-----ATAACCGATAAACAATA---------TTC---------------------------------------AT---------------------------TTGCCG-------------------------------------------ATATA-------CGA-----------CA-AACGA--------------------TATATCCGATAGATAG----C------A-------------GAGAGAGAGCGAGTAAAAG--AGAGC---------AGAGGA-AATCGA-------------------TAGC-GAGGC------GCGA-----GAG-AGAGAGGAATGCSizeHit CountTotal NormTotal
No Reads
droAna3
ACCAA-TTTGTGCAACC-AAAAGTCTTGAA-----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTTC---TCGTTCAACCA------------------------------------------A--CA-G-----CTTGATTACCTCCTTAGGC-----A--CTTTGTACTAC--CTAGCGCTATATATACTAT-----A--------AT--------AT--AAACCTAT----ATA--CACACCTATA-------------------------------TA----CAAA----TGGAAAACCAATAA--CTCC-GCCTTT-------GG---------------AGCTAGT-------TCTTA--TAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CGCGCTAGAATCTAACCCAGAGACCAGCTAAA----------------------------------------------------------------------------------------------------AACTAGCATTAAAGAGCCCCAAATATCAGCGAGCA-------------------------------------------TATCTAAGGGAACCAAA--CACA----TA-CCCGAA---------------------TATCTGACAGATCT----G---------------------------------------------------------------ACCGA-------------------GA--------------GCG-------AG-AGCGGGGAATGCSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------AACTAGCATTAAAGAGCCC.......................................................................................................................................................................................................................................................................2011.001000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCT----G---------------------------------------------------------------ACCGA-------------------GA--------------GCG-------AG-A...........1811.001001000
..............................................................................................................................................GATTACCTCCTTAGGC-----T--T.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1840.251000001
droBip1
ACCAA-TTTGTGAAACC-AAAAGTCTTGAA-----ATTCAACTGCTGCTGCAAACCGTATGACTGATTTT--C-TCGTTGAACCG------------------------------------------A--CA-G-----CTTGATTACCTCCTTA-GC-----G--CTTTATAT-AC--CG-----TA------------------------TT--------AT--AAACCT--TTATATA--TATACCTTTA-------------------------------TA----CAAA----TGGAAAACCAATAA--CTCC-GACTTT-------GG---------------AGCTAGTT----CT--TTA--TAAGC-------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGCTAGAATCTAACCCAGAAA---GAAAAA----------------------------------------------------------------------------------------------------AAAAAAAATTTAAAGGCCTTAAGTATCAGCGAGCA-------------------------------------------TATCTAAGGAAAAAAAA--CATA----TA-TCCGAA---------------------TATCTGGCAGATC----------------------------------------------------------------------------------------------------------AGAGCG-------AG-AGCGGGGAATGCSizeHit CountTotal NormTotal
No Reads
dp5
ACCAA-TTAGCCTAACCGAAAAGTCTTGAAA--A-TATCAACTGCTGCTGCAAACTGTATGACTGATTTATCC-ACGTTGATCAACCAACAGA-------AT-------------TGGGGAACAGAAACCCCCCAGAAAACTAACTAACTCCTTAAGA-----ACTCTTTATAT-AGCCTTTACAC-----CCAAGA-C-A----ACCTTAG--------------CC-------------ACCTTTTGGAAG-------------------------------AA----TGAA----TGGCTTG-CTATCG--CTAGAAGCT------------TTAAC-----------------TA---TT--TA--TTGA-----------------------GCCGAGTAGCCAA--------------------------------------------------------------------------------------------------------GTAGTCAG-------------------------------------------CTAACACTTGCAAGCAATCA-ATCAATCAATCAATCAATCAATCGATAAA--------------TCA---------------------------------------AT---------------------------CAGCAGATATACAAAAAATACACATAGAAGAGGAGCAGATACCTCACAGATATA-------CATACA--TACGT-----------------------------------TGATACA---------------------------------------------------------------------CAAGCGA-------------------GAGT-CATCGTCAGGACCCTGGGG--AG--AGGAGGAATGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
ACCAA-TTAGCCTAACCGAAAAGTCTTGAAA--A-TATCAACTGCTGCTGCAAACTGTATGACTGATTTATCC-ACGTTGATCAACCAACAGA-------AT-------------TGGGGAACAGAAACCCCCCAG---AAAACTAACTCCCCTAAGA-----ACTCTTTATAT-AGCCTTTACAC-----CCAAGA-C-A----ACCTTAG--------------CC-------------ACCTTTTGGAAG-------------------------------AA----TGAA----TGGCTTG-CTATCG--CTAGAAGCT------------TTAAC-----------------TA---TT--TA--TTGA-----------------------GCCGAGTAGCCAA--------------------------------------------------------------------------------------------------------GTAGTCAG-------------------------------------------CTAACACTTGCAAGCAATCA-ATCAATC----TATCAATCAATCGATAAA--------------TCA---------------------------------------AT---------------------------CAGCAGATATACAAAAAATACACATAGAAGAGGAGCAGATACCTCACAGATATA-------CATACA--TACGT-----------------------------------AGATACA---------------------------------------------------------------------CAAACGA-------------------GAGT-CATCGTCAGGACCCTGGGG--AG--AGGAGGAATGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
ACCAA-ATTGCT-AACT-AAAAGTCTTAAA-----TCAAAACTACTGCCGCAAACTGTATGACTGATTTTTTC-TCGATTAACCA---AACACTTAAAGCATTATCGAAACAAAATAAAAAACAA--A--ACCTA----AAATATTACCTCCCAATAA-----A--CTTTATAGGCA--TT-----TGC-------------------------------------------------------------CAATTATATTCTAACTCTTACTCGGCTAGAACTAAT----TAAT----TGG------------------------------------------------------------------------------------------------GCTAGTTAAACCAGTATAAAATAACAAAACAAAACCAAAATACTAGAATCTATAATACATAAAAAACT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATA----AA-CCCAAA------------CA--A--TTGATCAGATCGA-----------------------------------------------------------------------ACTGGA-------AAAGATCTTC-AAGT-GAGAC---------A-----GAG-GAAGAGGAATGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................................................................................................................................................................................................................................CTAAT----TAAT----TGG------------------------------------------------------------------------------------------------GCTAGTTAAACCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010
..................................................................................................................................................................................................................................................................................................TAAT----TGG------------------------------------------------------------------------------------------------GCTAGTTAAACC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00110000
droVir3
ACCAA-TTTTCT-AACT-AAAAGTCTTAAA-----ACTAAACT---GCTGCAAACCGAATGACTGATTTTT-C-----TGAACAT------------------------------------------A-----T-----AAAATTTACCTC-TAACTA-----A--CTTTATACCTA--TC-----AAT-ACCATAAACAAA-A--------AT------------CAGCCCA-----AAA--CAT---------------------------------ACATATA----TGCGTGAAGATCAAATCATTTA--CTA-------T------------ATTAAGTATTAGATCTTGGC----C-------------------------------------------T--------------------------------------------------------------------------------------------------------TAAAGTAGCTAGCT-------------------------------------------TTC-------------------------------AAAT--------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGACAACAAAGCAACTGAACAGTA----------ACAAGAA--------GTGACCGC---------AAACCAGGCTTGG--------AAGGATTTCAGTAGCTGTACGTAGCGGGCGC--G--GAG-AGTGAGGAATGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT--------------C----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTGACAACAAAGCAACTGAAC.......................................................................................................................2711.001010000000000000000000000000000000000000000000000000000000000000
.............AACT-AAAAGTCTTAAA-----ACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAACTGAACAGTA----------ACAAGAA--------GT........................................................................................2611.001000000000000000000000000001000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................GGC----C-------------------------------------------T--------------------------------------------------------------------------------------------------------TAAAGTAGCTAGCT-------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000001000000000000000000000000000000000000000000000000
................................................TGCAAACCGAATGACTGATTTTT-C-----TGAACAT------------------------------------------A-----T-----AAAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3711.001000000000000000000000000000000000000000000000000000000000010000
droMoj3
ACCAA-TTTGCT-AACA-AAAAGTCTAAAA-----AATCAACT---GCTGCAAACCGAATGACTGATTTTT-C-----TGAACA-----------------------------------------------TTT-----AATACTTACCTCCTAACGA-----A--CTTTATATCAAT-CT-----TATCAATCAGCG-----T--------AT----------ATATATATATATATATA--TATATATATA-------------------------------TATATATGCGAAAATCTCGAATCAAGTA--C--------ATA----TATCAAC------------------------A-TATAT--TATAGTTATATTGGACTTCACGCGGAA-CGAAGT---------------------------------------------------------AGTTAGAA---------------------------------------------GTAGATAGAG-----CTT------------------------------------------------------------------------------------------TGACAAATATCTTTAGCTATTCG-------------AAAACAACAACA---------------------------------------------------------------------------------------------AC--AAAA----TAAAAC-AA-----------------------------AA-TAA----A--ACAAAACATAA----------ACAAACA-------------------------GTGTAAGAAACAGTGCATCCG-----------AT-T-AAGT----------TGAGGAGAGCAGAGAGGAATGCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------------------------GTAGATAGAG-----CTT------------------------------------------------------------------------------------------TGACAAAT..................................................................................................................................................................................................................................................................................................................................2211.001000001
droGri2
ACCAA-TTTGCT-AACT-AAAAGTCTTAAC-----ATTAAACTGCTGCTGCAAACTGAATGACTGATTTAT------ATGAACAA------------------------------------------A-----T-----AGAAATTACCTCCTAAAGA-----A--CTTTATACTTC--TCGAAAC-----AAAAGA-A-A----ACTTTAA--------------ACATACCTAC--ATA--CATATGTATA-------------------TGC---------CA----AGAA----TGGAAAATCATTTA--CTAA-AATATT-------AG---------------GTATTGTC----TT--TAG--TAATACA-------ACTTAACACAGC-------------------------------------------------------------------------------------------------------------CCAAATACAGTAGATAGCT-------------------------------------------ATT-------------------------------AAAT--------------ATTTGACAAACCTATTCA----------------GCATTAAAG----------------------AGCC----------------A-------------------------------------------TATCTCCC-------AA--AAAC----TAACAC-AA-----------------------------AAACA--------------------------------AAAA--------GAAAACAAAAAACAATAATA-AAAAAACAGCATATCAG-----------TTGT-AAGTC-GCTG-GCGA--G--GAG-ATTAAGGAATGCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:40 AM