ID:

dsi_25316

 Coordinate:

3r:4443977-4444205 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-36.5 -36.5 -36.5

Flybase annnotation

exon [3r_4443264_4443976_+]; CDS [3r_4443264_4443976_+]; CDS [3r_4444206_4444558_+]; exon [3r_4444206_4444558_+]; intron [3r_4443977_4444205_+]

No Repeatable elements found

Sense Strand Reads

##################################################-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCCAGGGCTGGCATCCTGTACATTAACCCGCAGGACTTGGGTTGGAATCCGTGAGTATGGGGAGTAACTGGGATACCCGTACTACTACTACTTTTCTCAAGTTCAAATCTCTCACTGGTTTCTTTATTATTATTCAAAATTGGCATTGCTGTAACTCATGTTCTCGTTTTGCATTCCTCTCAAATAGCTGGAATCGGAACCGATCTTTCCTAGAACATTTTACATAATACTATATAAGAACTATATAAGTTCGTTTCACTAACCCACCTCTCTTTCCAGCTATGTAACCAGTTGGGTTGAAACGCGTAAAATTCCAGCCGAAAAGTCCA
**************************************************..(((..((((((((((..((((.(((.((.........((((.....))))...........)).))).)))).....)))))).....(((.((((.(((((...(((((((.((((((.(((((............)))))))))))...........))))))).))))))))).))).....(((((.....)))))..........)))).))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 SRR902008
ovaries
 M024
male body
...................................................................................................AGTTCAAATCTCTCA....................................................................................................................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0 0
..................................................................................................................................................................CTCGTGTTGCATTCCT....................................................................................................................................................... 16 1 2 1.00 2 1 0 1 0 0 0 0 0
..............................................................................................TCGCAAGTTCAAATCT........................................................................................................................................................................................................................... 16 1 1 1.00 1 1 0 0 0 0 0 0 0
..............................................................................................TCTCGAGTTCAAATCT........................................................................................................................................................................................................................... 16 1 4 0.75 3 3 0 0 0 0 0 0 0
..............................................................................................TCTCGAGTTCAAATC............................................................................................................................................................................................................................ 15 1 10 0.60 6 6 0 0 0 0 0 0 0
................................................................................................................................................................TCCTCGTGTTGCATTCCT....................................................................................................................................................... 18 2 8 0.50 4 1 3 0 0 0 0 0 0
...............................................................................................................................................................GTCCTCGTGTTGCATTCC........................................................................................................................................................ 18 2 4 0.50 2 0 0 0 2 0 0 0 0
.................................................................................................................................................TTGCTGTAACTCATGG........................................................................................................................................................................ 16 1 2 0.50 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................CCTCGTGTTGCATTCCT....................................................................................................................................................... 17 2 12 0.42 5 0 3 2 0 0 0 0 0
...............................................................................................................................................................GTCCTCGTGTTGCATTCCT....................................................................................................................................................... 19 2 3 0.33 1 0 0 0 0 0 1 0 0
.............................................................................................................................................................AAGTCCTCGTGTTGCATTCCT....................................................................................................................................................... 21 3 3 0.33 1 1 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................GTAACCTGTTGGGTT............................... 15 1 4 0.25 1 0 0 0 1 0 0 0 0
...............................................................................................................................................................GTCCTCGTGTTGCATCCCT....................................................................................................................................................... 19 3 20 0.20 4 0 2 0 2 0 0 0 0
...................................................................................................................................................................TCGTGTTGCATTCCT....................................................................................................................................................... 15 1 6 0.17 1 0 0 1 0 0 0 0 0
..............................................................................................TCTCGAGTTCAAATCTCG......................................................................................................................................................................................................................... 18 2 7 0.14 1 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................TATAATAACTATATAACTTCATT.......................................................................... 23 3 8 0.13 1 0 0 0 0 0 0 1 0
................................................................................................................................................................TCCTCGTGTTGCATTCC........................................................................................................................................................ 17 2 20 0.10 2 0 1 1 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................GTTGAAACACGTAAA................... 15 1 12 0.08 1 0 1 0 0 0 0 0 0
................................................................................................................................................................................................................................TACTACTATATCAGAAC........................................................................................ 17 2 12 0.08 1 0 1 0 0 0 0 0 0
...................................................................................................AGTTCGAATCTCTCA....................................................................................................................................................................................................................... 15 1 13 0.08 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................GTCCTCGTGTTGCATTCCG....................................................................................................................................................... 19 3 17 0.06 1 0 0 0 0 0 1 0 0
.................................................................................................................................................................TCTCGTGTTGCATCCCT....................................................................................................................................................... 17 2 17 0.06 1 0 1 0 0 0 0 0 0
........................................GTTGGAATCCGGGAGGAC............................................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1
.......................................GGTTCGAATCCGTCAG.................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGGTCCCGACCGTAGGACATGTAATTGGGCGTCCTGAACCCAACCTTAGGCACTCATACCCCTCATTGACCCTATGGGCATGATGATGATGAAAAGAGTTCAAGTTTAGAGAGTGACCAAAGAAATAATAATAAGTTTTAACCGTAACGACATTGAGTACAAGAGCAAAACGTAAGGAGAGTTTATCGACCTTAGCCTTGGCTAGAAAGGATCTTGTAAAATGTATTATGATATATTCTTGATATATTCAAGCAAAGTGATTGGGTGGAGAGAAAGGTCGATACATTGGTCAACCCAACTTTGCGCATTTTAAGGTCGGCTTTTCAGGT
**************************************************..(((..((((((((((..((((.(((.((.........((((.....))))...........)).))).)))).....)))))).....(((.((((.(((((...(((((((.((((((.(((((............)))))))))))...........))))))).))))))))).))).....(((((.....)))))..........)))).))).........************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
...............................................................................ATGCTGATGATGAAAAGCG....................................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0
........ACCCTAGGCCACGTAATTG.............................................................................................................................................................................................................................................................................................................. 19 3 14 0.14 2 2 0 0
......................................................................................................................................................................................................................................ATATACTCTTGATAT.................................................................................... 15 1 20 0.10 2 2 0 0
.......................................................................CTAGGGGCATGATGTTG................................................................................................................................................................................................................................................. 17 2 12 0.08 1 0 1 0
.....................................................................................................................................................................CAAAAGGTAAGGAGAATT.................................................................................................................................................. 18 2 15 0.07 1 1 0 0
...........................................................................................................................................................................ATAAGGAGAGTTTAT............................................................................................................................................... 15 1 17 0.06 1 1 0 0
...............................TCCTGGACCCAATCTT.......................................................................................................................................................................................................................................................................................... 16 2 20 0.05 1 0 0 1

Generated: 04/24/2015 at 07:37 AM