ID:

dsi_25311

 Coordinate:

3l:11472603-11472752 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-2.3 -2.1 -2.0 -1.6

Flybase annnotation

CDS [3l_11472409_11472602_+]; exon [3l_11472409_11472602_+]; intron [3l_11472603_11473304_+]; Antisense to intron [3l_11471601_11475771_-]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AGCAGCAACAGCAGCAAGTGCCGCCACGTTACGCAGCTTTCGAATCGCAGGTGCGTATGCAAATCAAAAGAACTTAACACCCGATGCACGCAGTTAATAAAGGTTAATGTGATACCGATACCACCACAACTGAAGCTATACCCATACCAATATTCATACATATGTATATCTGTATGTACCATACACAGCGATCCAGCGACGAGTGGTTCTGATAAGGCAGGGCAAATACAAACACAAACATTCGCAGGTG
********************************************************.((..((((........(((((..............)))))....))))..))********************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 M024
male body		 O001
Testis
 O002
Head
 SRR902009
testis
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 M053
female body
......................GCCACGTTACGCAGCTTTCGA............................................................................................................................................................................................................... 21 0 1 3.00 3 3 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................ATCCAGCGACGAGTGGTTCTG....................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................................................................................AGTTAATAAAGGTTAATG............................................................................................................................................. 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0
AGCAGCAACAGCAGCAAGTGC..................................................................................................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0
................................................................................................................................................................................................................................AGTACAAACACAAACATTCGC..... 21 1 1 1.00 1 0 0 0 0 1 0 0 0 0
........................................................ATGCAAATCAAAAGAACTTAACACCC........................................................................................................................................................................ 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................................................................................TAAAGGTTAATGTGATAC....................................................................................................................................... 18 0 1 1.00 1 0 0 0 1 0 0 0 0 0
...................................................................AAGAACTTAACACCCGATCCACGCAG............................................................................................................................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................TATTCTTACATATGTACATCTGAAT........................................................................... 25 3 2 0.50 1 0 0 0 0 0 0 1 0 0
.........................................................TGCAAATCAAAAGAA.................................................................................................................................................................................. 15 0 5 0.20 1 0 0 0 0 0 0 0 1 0
........................................................ATGCAAGTCGAAAGAACT................................................................................................................................................................................ 18 2 10 0.10 1 0 1 0 0 0 0 0 0 0
........................................................ATGCAAGTCAAACGAACT................................................................................................................................................................................ 18 2 16 0.06 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................................................................GTTCTGATAACGCGGGGA........................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

TCGTCGTTGTCGTCGTTCACGGCGGTGCAATGCGTCGAAAGCTTAGCGTCCACGCATACGTTTAGTTTTCTTGAATTGTGGGCTACGTGCGTCAATTATTTCCAATTACACTATGGCTATGGTGGTGTTGACTTCGATATGGGTATGGTTATAAGTATGTATACATATAGACATACATGGTATGTGTCGCTAGGTCGCTGCTCACCAAGACTATTCCGTCCCGTTTATGTTTGTGTTTGTAAGCGTCCAC
*********************************************************************************************************************************************.((..((((........(((((..............)))))....))))..))******************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 M053
female body
 M023
head
 M024
male body		 SRR553488
RT_0-2 hours eggs
 GSM343915
embryo
...........................................................................................................................................TGGGTATGGTTATAAGTATGT.......................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
.......................GGTGCAATGCGTCGAAAGCTT.............................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0
...............................................................................GGGCTACGTGCGTCAATTATT...................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................CTATTCCGTCCCGTTTATGT.................... 20 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................CTAGGTCGCTGCTCACCAAGAC....................................... 22 0 1 1.00 1 0 0 0 0 1 0 0
....................GGCGGTGCAATGCGTCGA.................................................................................................................................................................................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................TGTCGCTAGGTCGCTGCTCAC............................................. 21 0 1 1.00 1 0 0 1 0 0 0 0
..........................................................................................................................................................................................TCGCTAGGTCGCTGCTCACC............................................ 20 0 1 1.00 1 0 0 0 1 0 0 0
....................GGCGGTGCAATGCGTCGAAAG................................................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................CACTATGGCTATGGTGGTGTT......................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................TAGGTCGCTGCTCACCAA.......................................... 18 0 2 0.50 1 0 0 0 1 0 0 0
......................................................CAAACGTTTAGTTGACTTGAATT............................................................................................................................................................................. 23 3 3 0.33 1 1 0 0 0 0 0 0
........................................GCCTAGCGTCCATGCCTACG.............................................................................................................................................................................................. 20 3 4 0.25 1 1 0 0 0 0 0 0
..................................................................................................................................................................................GGTATGTATCGATGGGTCGCT................................................... 21 3 4 0.25 1 0 0 0 0 0 1 0
....................................................................................................................CCATCGAGGTGTTGACTTCG.................................................................................................................. 20 3 7 0.14 1 1 0 0 0 0 0 0
..................................................................................................................................................................................GGTATGTATCGATGGGTCGC.................................................... 20 3 7 0.14 1 0 0 1 0 0 0 0
................................................................................................................AAGGCTATGGAGGTGTT......................................................................................................................... 17 2 12 0.08 1 0 0 0 0 0 1 0
......................TGGTGCATAGCGTCGAAAG................................................................................................................................................................................................................. 19 3 18 0.06 1 0 0 0 0 0 0 1
.................................................................................................................TGGCTACGGTGGTATTG........................................................................................................................ 17 2 18 0.06 1 1 0 0 0 0 0 0
.......................................................................................................................AGGTGGTGTTGACTT.................................................................................................................... 15 1 19 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................AAGAATGTATACATGTAGACT............................................................................. 21 3 20 0.05 1 0 0 0 0 0 1 0
.............................................................................................................AATAAGGCTATGGAGGTGT.......................................................................................................................... 19 3 20 0.05 1 1 0 0 0 0 0 0

Generated: 04/24/2015 at 09:46 AM