ID:

dsi_25287

 Coordinate:

4:652004-652153 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.7 -19.4 -19.0 -18.7

Flybase annnotation

intergenic

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+

Sense Strand Reads

TAGGGATGATAAAACAACTTCAATTAATACGTAATCGAATACTCAGTCAGGTGCGTCAAAACCCATTTATATAAAATTTAGCTGAGAACAAGATTAAAACAATAGAGAACTCAATAGTCGAGTTCCCCGACTATCGGATACCCGTTACTCAGTTGGTGCAAGTGGGACCAAGAATTTTCAAAAATTTTCAGGAATATAGGTAGGAAATTGGTGGAAAAAATTCATTTTAATCCTCTAAGGTGTGGGCGAG
***********************************************************************((....((((((((((((...(((...........((((((.......))))))...........)))....))).)))))))))))..****************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR902009
testis
............................................................................................................................................................................AATTTTCAAAACTTTTCAGGCA........................................................ 22 2 1 2.00 2 0 2 0 0 0 0 0
.....................................................................................................................................TCGGATACCCGTTACTCAGTTGGTGCA.......................................................................................... 27 0 1 2.00 2 1 0 0 0 1 0 0
.......................................................................TAAAATTTAGCTGAGAACAAG.............................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................CCGTTACTCAGTTGGTGCAAGTGG..................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................TAGGAAATTGGTGGAAAAAAA............................. 21 1 1 1.00 1 0 0 1 0 0 0 0
............................................................................................................................................................TGCAAGTGGGACCAAGAATTTTCAAAAA.................................................................. 28 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................TATAGGTAGGAAATTGGTGGAAAAAA.............................. 26 0 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................TACTCAGTTGGTGCAAGTGGGACCAAGA............................................................................. 28 0 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................TCGGATACCCGTTACTCAGTTGGTGCAA......................................................................................... 28 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................TCGGATACCCGTTACTCAGTTGGTG............................................................................................ 25 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................TCCCCGACTATCGGATACCCGTTACTCA................................................................................................... 28 0 2 0.50 1 0 1 0 0 0 0 0
.............................................................................................................................................CCGTTACTCAGTTGGT............................................................................................. 16 0 2 0.50 1 0 0 1 0 0 0 0
..................................................................................................................................................................................................TATAGGAAGGCAATTGGTGGAAGAAA.............................. 26 3 4 0.25 1 0 0 0 0 0 1 0
....................................................................................................................................................................................................................................AATCCGCTAAGGAGTGGG.... 18 2 6 0.17 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................................AATCCGCTAAGGAGTGG..... 17 2 13 0.15 2 0 0 2 0 0 0 0
.........................................................................................................................................................................................................AGGAAATTGTCGGAAAAAA.............................. 19 2 9 0.11 1 0 0 0 0 0 0 1
............................................................................................................................................TCCGTTACTCCGTTGCTGCA.......................................................................................... 20 3 13 0.08 1 0 0 1 0 0 0 0
...........................................................................................................................................GCCCGTAGCTCAGTTGGT............................................................................................. 18 3 20 0.05 1 0 0 0 0 1 0 0
...................................................................AATAGAAAAATTAGCTGAGA................................................................................................................................................................... 20 3 20 0.05 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................TAGGAAATTTGTGGA................................... 15 1 20 0.05 1 0 1 0 0 0 0 0
................................................................................................AAACAATGGAGACCTCACT....................................................................................................................................... 19 3 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

ATCCCTACTATTTTGTTGAAGTTAATTATGCATTAGCTTATGAGTCAGTCCACGCAGTTTTGGGTAAATATATTTTAAATCGACTCTTGTTCTAATTTTGTTATCTCTTGAGTTATCAGCTCAAGGGGCTGATAGCCTATGGGCAATGAGTCAACCACGTTCACCCTGGTTCTTAAAAGTTTTTAAAAGTCCTTATATCCATCCTTTAACCACCTTTTTTAAGTAAAATTAGGAGATTCCACACCCGCTC
******************************************************************************************((....((((((((((((...(((...........((((((.......))))))...........)))....))).)))))))))))..*********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M053
female body
 O002
Head
 GSM343915
embryo
 M024
male body
...........................................................................................................................AGGGGCTGATAGCCTATGGGCAATGAGT................................................................................................... 28 0 2 5.00 10 3 7 0 0 0 0 0 0 0
.................................TAGCTTATGAGTCAGTCCACGCAGTTT.............................................................................................................................................................................................. 27 0 1 3.00 3 0 1 1 0 1 0 0 0 0
......................................................................................................................................................................TGGCTCTTAAAAGCTTTTAAACGTCCTT........................................................ 28 3 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................TAGCTTATGAGTCAGTCCACGCAGT................................................................................................................................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.................................TAGCTTATGAGTCAGTCCACGCAGGTT.............................................................................................................................................................................................. 27 1 1 2.00 2 0 0 0 2 0 0 0 0 0
............................................................................................................................GGGGCTGATAGCCTATGGGCAATGAGT................................................................................................... 27 0 2 1.50 3 2 1 0 0 0 0 0 0 0
.............................................................................................................................GGGCTGATAGCCTATGGGCAATGAGT................................................................................................... 26 0 3 1.33 4 1 2 0 0 1 0 0 0 0
..........................................................................................................................................................CCACGTTCACCCTGGTTCTTAAAAGTT..................................................................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0
....................................CTTATGAGTCAGTCCACGTAGGTTT............................................................................................................................................................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0 0 0
.........ATTTTGTTGAAGTTAATTATGCAT......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................TAATTATGCATTAGCTTATGAGTCAGT......................................................................................................................................................................................................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............TGTTGAAGTTAATTATGCATT........................................................................................................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0
...........TTTGTTGAAGTTAATTATGCATT........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................CTAATTTTGTTATCTCTTGAGTTAT...................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................TGATAGCCTATGGGCAATGAGTCAAC............................................................................................... 26 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................................GAGTCAACCACGTTCACCCTGGTTCTT............................................................................ 27 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................................................ACGCAGTTTTGGGTTAGTCTATT................................................................................................................................................................................ 23 3 2 0.50 1 0 0 0 0 0 0 0 1 0
........................................................................................................................TCAAGGGGCTGATAGCCTATGGGCAAT....................................................................................................... 27 0 2 0.50 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................GGCTGATAGCCTATGGGCAA........................................................................................................ 20 0 3 0.33 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................GGCTGATAGCCTATGGGCA......................................................................................................... 19 0 3 0.33 1 0 0 1 0 0 0 0 0 0
...................................................................................................................................ATAGCCTATGGGCAATGAGT................................................................................................... 20 0 8 0.25 2 0 0 2 0 0 0 0 0 0
................................................................................................................................CTGATAGCCTATGGGCAATGAGT................................................................................................... 23 0 8 0.25 2 0 0 2 0 0 0 0 0 0
............................................................TGGGTAAATATATTCT.............................................................................................................................................................................. 16 1 6 0.17 1 0 0 1 0 0 0 0 0 0
............................................................TGGGTAAATATATTTTT............................................................................................................................................................................. 17 1 7 0.14 1 0 0 1 0 0 0 0 0 0
...............................................................................................................................GCTGATAGCCTATGGGCAATGAGT................................................................................................... 24 0 8 0.13 1 0 0 1 0 0 0 0 0 0
........................................................................................................................................................AACCCCGTTTACCCTGATTC.............................................................................. 20 3 8 0.13 1 0 0 0 0 0 0 0 0 1
.....................................TTATGAGTCAGACCA...................................................................................................................................................................................................... 15 1 9 0.11 1 1 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................TTTTTTAAGTAAAAT..................... 15 0 10 0.10 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................GGGCTGATAGCCTATGGGCAATGAAT................................................................................................... 26 1 11 0.09 1 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................AAAAGTTTTTCCAACTCCTTA....................................................... 21 3 12 0.08 1 0 0 0 0 0 0 0 1 0
.......................................................................................................................................CCTATGGGCAATGAG.................................................................................................... 15 0 13 0.08 1 0 0 1 0 0 0 0 0 0
..............................................................................................................................GGCTGATAGCCTATGGGCAATGAAT................................................................................................... 25 1 13 0.08 1 0 0 0 1 0 0 0 0 0
...................................................ACGTAGTTTTGGGTA........................................................................................................................................................................................ 15 1 13 0.08 1 0 0 1 0 0 0 0 0 0
....................................................................................................................CAGCTCGAGGGGCTGATAGCCTAT.............................................................................................................. 24 1 14 0.07 1 0 1 0 0 0 0 0 0 0
....................................................................................................................CAGCTCAAGGGGCTGAT..................................................................................................................... 17 0 20 0.05 1 0 0 1 0 0 0 0 0 0
.............................................................................................................................AGGCTGATAGCCTATGGGCAATGAGC................................................................................................... 26 2 20 0.05 1 0 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 4:651954-652203 - dsi_25287 TAGGGATGATAAAACAACTTCAATTAATA------------------------------------------------------CGTAATCG---AATACTCAGTCAGGTGCGTCAAAACCCATTTAT--ATAAAA------------TT-TAGCTGAGAA------------------------------CAAGATTAAAACAATAGAGAACTCAATAGTCGAGTTCCCCGACTATCGGATACCCGTTACTCAGTTGG----TGCAAGTGGGACCAA-----------------------------------------GAATTTTCAAA-----AA-TTTTCAGGAATATAGGTAGGAAATTGGTGGAAAAAATTCATT---------------------------TT-----AA-TCCTC-TAAGGTGTGGG--CGAG
droSec2 scaffold_30:552050-552310 - TAGGGATGATAAAACAACTTCAATTAATA------------------------------------------------------CGTAATCG---AATACTCAGTCAGGTGCGTCAAAACCCATTTAT--ATAAAATTTAGCTGAGAATT-TAGCTGAGAA------------------------------CAAGATTAAAACAATAGAGAACTCAATAGTCGAGTTCCCCGACTATCGGATACCCGTTACTCAGTTGG----TGCAAGTGGGACCAA-----------------------------------------GAATTTTCAAA-----AA-TTTTCAGGAATATAGGTAG-AAATTGATGGAAAAAATTCATT---------------------------TT-----AA-TCCTC-TAAGGTGTGGG--CGAG
dm3 chr4:843959-844176 - TAGGGATGATAAAACAACTTCAATTAATA------------------------------------------------------CGTAATCG---AATACTCAGTCAGGTGCGTCCAAACCCATTTAT--ATAAAAATGTTCCG-GTATT-TAGCTGAGAA------------------------------CAAGATTAAAATAAAGGAGACCGCTATAGTCGAGTTCCCCGACTATCAGATACCCGTTACTCAGGTGG----TCCAAGTGGGACCGA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-AAATTGGTGGACTAA-----------------------------------------------------------------AG
droEre2 scaffold_4845:2492845-2493097 + CAGCCTTAATAATAGAA--ATAGTAAACA------------------------------------------------------TGTATTCAAAATATACATAAATATTTTCTTAAAAACTTATATATTCCTAAAAATTGTCTG-GCATT-TA-------------------------------------------AAAGAACAAGATAGAATGCTATAGTCGAGTTCCCCGATTATCAGATACTTGTTACTCAGCTAG----TGAAAGTGCGCCCGA-----------------------------------------GAAATTTAA-T-----CA-TTTTTTGGAAGATCGGTAA-AAACTGCAAAAAA-ATATTAAAAAATGT--------------------AAA-----AG-TTTTC-AAAAGTGTGGG--CG--
droYak3 2L:20767764-20767976 - CCT-----------------GAAATAAAA-AGTTATTGCATTCTTTC-------------------------------TCTCA-------------------------AATATC---------------AAA-AA------------TTTATATTAGATG------------------------------CTAATCAAAAACAAGAGAGAACGCTGTAGTCGAGTTCCCCGACTATCTGATACCCGTTACTCAGCTAA----TAGAAGTGCGAAGGA-----------------------------------------GAAATTTTAAGACAAACAGTTTTC-GGC------------GGCTTGTGAAAACATATCAAC---------------------------AC-----AT-TTTTC-AAAAGTGTGGA--CGTT
droEug1 scf7180000409509:809018-809148 + AA---------------CTCAAATTAGTT------------------------------------------------------CGAAA--A---AATACTAAAACAGATTTTTCATTTC---TGTACTTAAAA-A------------AG-TAGCTAAAAA-----------------------------AGTAATTAAAAACAAGAGGAAACGCTATAGTCGAGTGCCGCGACTATAAGATACCCGTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBia1 scf7180000301632:17686-17933 + TTT------------------AATAAAGACGTGAAACGCGTCCT----TAGTCAACTGACGGGACATTAGTTCGACTCATTAA-------------------------ATTAG-------------T--AAA------------CAATT-TTACTATATA------------------------------TATATATAAAACAATGAAGAACGCTATAGTCGAGTGCCTCGACTTTAAGATACCCGTTACTCAGCTGAATGGAGCAAAAGGGAA----ATGAAG----------------------------------------------------------------ATT--TAA-AAGCAGCAAAGCA-ATATTGTAAAGCGTCACCTAACCGCTATTTCAGTATA-----TG-T--T------CTGTGGGCGGCAG
droTak1 scf7180000415815:134033-134295 + TAAAGATAATAAAGTACCACT-------------------CGCTTTTTTGAA-----------------------------CAGATACCAA---TATACTAAATTAATGGCGTCAAG---CTTTCAA--ATAAAA-------------A-TAACAACAAA-----------------------------TCAAAAATAAAACAAGAGAGAACGCTATAGTCGGGTGCCCCGACTATCAGATACCCGTTACTCAGCTAA----AGGGAGTGCGAAGGAGATGGAGAAAACACTTTCATCCGCCGTAAATTTTTAACGAATGGTCC--------------------------------------GATTTAAAAAATTTCTT---------------------------CT-----AC-ATTTCGATAGGTATTGA--TAAA
droEle1 scf7180000490172:6782-6927 + AAAAAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACAAGAATGACCTCTATAGTCGAGTTTCCCGAATATTAGATACCCGTTACTCAGCTAA----CAAATTTCAAACAAA-----------------------------------------ATATTCGCCCC-----AT-ATTTAAGA--------------------------AACAAATT---------------------------CTAACGCAGTTTTTC-AAAAGTCTAGG--CTGA
droRho1 scf7180000762459:4725-4974 + TAAAGTTTTTGGCGC--------------------------------------------------------------------CATAATAA---AGCCTTTAAACGTACATATTGAAACCTTTAAAA--AAAATA------------TT-AGGATTGGAGCGATTCGAAAATTTTTTGTAATGTAGAATTTACAAATAAAATAACAGTGAACGCTATAGTCGGATGCCCCGACTATCATATACCAGTTACTCAGCCAAA-GGTCCGATTTGAACAA---------------------------------------------TTTTGA-------------------------------ATGAGTATATTA-GTATTGA----TT---------TACAATTTTAC--AA-----AA-TCATT-TGAAATGCGG---CCAG
droFic1 scf7180000454040:423074-423129 - TAGAGATGATCAAGCAACTTCAGATTATA------------------------------------------------------AAAAGTCA---ATTATTCAGTCAAGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302766:53976-54031 + TGGAGATGATTAAGAATTTTCAGTTAATA------------------------------------------------------CGAAGTCG---ATTACTTGGTCAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 Unknown_group_43:61840-61912 + CCGAAATGATACGACAACTTCAACTGATT------------------------------------------------------AGAAGTCG---CTTGCTTACACAGGCAAGTAACAGCGCGATTAT--ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TAGGGATGATAAAACAACTTCAATTAATA------------------------------------------------------CGTAATCG---AATACTCAGTCAGGTGCGTCAAAACCCATTTAT--ATAAAA------------TT-TAGCTGAGAA------------------------------CAAGATTAAAACAATAGAGAACTCAATAGTCGAGTTCCCCGACTATCGGATACCCGTTACTCAGTTGG----TGCAAGTGGGACCAA-----------------------------------------GAATTTTCAAA-----AA-TTTTCAGGAATATAGGTAGGAAATTGGTGGAAAAAATTCATT---------------------------TT-----AA-TCCTC-TAAGGTGTGGG--CGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................TCGGATACCCGTTACTCAGTTGG----TGCA.............................................................................................................................................................................2712.00200000010010000000
..................................................................................................................................TAAAA------------TT-TAGCTGAGAA------------------------------CAAG.....................................................................................................................................................................................................................................................2111.00100000010000000000
...................................................................................................................................................................................................................................................CCGTTACTCAGTTGG----TGCAAGTGG........................................................................................................................................................................2411.00100000000001000000
.................................................................................................................................................................................................................................................................................................................................................................TAGGAAATTGGTGGAAAAAAA.................................................................2111.00100000000001000000
......................................................................................................................................................................................................................................................................TGCAAGTGGGACCAA-----------------------------------------GAATTTTCAAA-----AA-......................................................................................................2811.00100000010000000000
...........................................................................................................................................................................................................................................................................................................................................................TATAGGTAGGAAATTGGTGGAAAAAA..................................................................2611.00100000000100000000
.......................................................................................................................................................................................................................................................TACTCAGTTGG----TGCAAGTGGGACCAA-----------------------------------------GA.......................................................................................................................2811.00100000001000000000
...........................................................................................................................................................................................................................................TCGGATACCCGTTACTCAGTTGG----TGCAA............................................................................................................................................................................2811.00100000010000000000
...........................................................................................................................................................................................................................................TCGGATACCCGTTACTCAGTTGG----TG...............................................................................................................................................................................2511.00100000001000000000
.................................................................................................................................................................................................................................TCCCCGACTATCGGATACCCGTTACTCA..........................................................................................................................................................................................2820.50100000000100000000
...................................................................................................................................................................................................................................................CCGTTACTCAGTTGG----T................................................................................................................................................................................1620.50100000000001000000
droSec2
TAGGGATGATAAAACAACTTCAATTAATA------------------------------------------------------CGTAATCG---AATACTCAGTCAGGTGCGTCAAAACCCATTTAT--ATAAAATTTAGCTGAGAATT-TAGCTGAGAA------------------------------CAAGATTAAAACAATAGAGAACTCAATAGTCGAGTTCCCCGACTATCGGATACCCGTTACTCAGTTGG----TGCAAGTGGGACCAA-----------------------------------------GAATTTTCAAA-----AA-TTTTCAGGAATATAGGTAG-AAATTGATGGAAAAAATTCATT---------------------------TT-----AA-TCCTC-TAAGGTGTGGG--CGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
dm3
TAGGGATGATAAAACAACTTCAATTAATA------------------------------------------------------CGTAATCG---AATACTCAGTCAGGTGCGTCCAAACCCATTTAT--ATAAAAATGTTCCG-GTATT-TAGCTGAGAA------------------------------CAAGATTAAAATAAAGGAGACCGCTATAGTCGAGTTCCCCGACTATCAGATACCCGTTACTCAGGTGG----TCCAAGTGGGACCGA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-AAATTGGTGGACTAA-----------------------------------------------------------------AGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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....................................................................................................................................................................................................................................................CGTTACTCAGGTGG----TCCAAG...........................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TTTCAAC-----A--------------TATGTAG-AAATTG............................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................TGGGACCGA-----------------------------------------GAATTTTCAAC-----A--------------T.........................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CAAGTGGGACCGA-----------------------------------------GAATTTTCAAC-----A--------------TA........................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................CGTAATCG---AATACTCAGTCA.............................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-AAAT..............................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................TCAGGTGG----TCCAAGTGGGAC.....................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCCAAGTGGGACCGA-----------------------------------------GAATTT...................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................ATACTCAGTCAGGTGCGTCCAAACCCA.............................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.................................................................................................................................ATAAAAATGTTCCG-GTATT-TAGCTGA..........................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................CGCTATAGTCGAGTTCCCCGACTA............................................................................................................................................................................................................2491.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000060010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
..................TTCAATTAATA------------------------------------------------------CGTAATCG---AAA......................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................AATAAAGGAGACCGCTATAGT...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................GTATT-TAGCTGAGAA------------------------------CAAGAT...................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........TAAAACAACTTCAATTAATA------------------------------------------------------CGTAATCG---A........................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................GATTAAAATAAAGGAGACCGCT................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AGTGGGACCGA-----------------------------------------GAATTTTCAA...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................TCCAAACCCATTTAT--ATAAAAATGTTCCG-G......................................................................................................................................................................................................................................................................................................3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................ATTTTCAAC-----A--------------TATGTAG-AAATTGGTG.........................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................T-TAGCTGAGAA------------------------------CAAGATTAAAAT.............................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCAGTCAGGTGCGTCCAAAGA...............................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCCAAGTGGGACCGA-----------------------------------------GAATTTTCAAC-----.........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................TCCAAGTGGGACCGA-----------------------------------------GAATTTTCAAC-----A--------------T.........................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TTAATA------------------------------------------------------CGTAATCG---AATACTC..................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................GTTACTCAGGTGG----TCCAAGTG.........................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................ATT-TAGCTGAGAA------------------------------CAAGATTA.................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CCCATTTAT--ATAAAAATGTTCCG-GTAT...................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................AAATAAAGGAGACCGCTATAGTCGAGT......................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................TGCGTCCAAACCCATTTAT--ATAAAAA...............................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................AGTGGGACCGA-----------------------------------------GAATTTTCAAA-----.........................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................AAGTGGGACCGA-----------------------------------------GAATTTTCAA...............................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................G---AATACTCAGTCAGGTGCGTCC....................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ACCGA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-A.................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCAGTCAGGTGCGTCCAAACCCATTTA.........................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................AATACTCAGTCAGGTGCGTCCAA..................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................ACCGA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-AAC...............................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................CCGCTATAGTCGAGTTCCCCGT...............................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
.......................................................................................................................................................................................................AATAAAGGAGACCGCTATAGTCGAG.......................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................CAAGTGGGACCGA-----------------------------------------GAATTTT..................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................AATGTTCCG-GTATT-TAGCTGAG.........................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
.................................................................................................................................................TATT-TAGCTGAGAA------------------------------CAAGATTAAAATAAA..........................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................ACTTCAATTAATA------------------------------------------------------CGTAATCG---AA.......................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................CG---AATACTCAGTCAGGTGCGTCCAAACC...............................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................TAATCG---AATACTCAGTCAGGT..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CCGTTACTCAGGTGG----TCCAA............................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................ATAAAAATGTTCCG-GTATT-T................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................GA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-AAATT.............................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................TAAAATAAAGGAGACCGCTATAGTC..........................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................T--ATAAAAATGTTCCG-GTATT-TAGCTGA..........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................TAT--ATAAAAATGTTCCG-GTATT-TAG..............................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................GAGACCGCTATAGTCGAGTTC....................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................CTCAGGTGG----TCCAAGTGGGAC.....................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................ACTCAGTCAGGTGCGTCCAAA.................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................GAATTTTCAAC-----A--------------TATGTAG-AAAT..............................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................AGGAGACCGCTATAGTCGAGTTC....................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................TTACTCAGGTGG----TCCAAGTGGGACCGA-----------------------------------------.........................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................................................TCAGGTGCGTCCAAACCCATT...........................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TAAAGGAGACCGCTATAGTCG.........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.................................................................................................ACTCAGTCAGGTGCGTCCAAACCCA.............................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...............................................................................................................................................................................................AAGATTAAAATAAAGGAGACC...................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
........................................................................................TCG---AATACTCAGTCAGGTGCGTCCAAAC................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GACCGA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-A.................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................AGATTAAAATAAAGGAGACCG..................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................TGTTCCG-GTATT-TAGCTGAGAA------------------------------CAAGAT...................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................GGTGCGTCCAAACCCATTTA.........................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................AC-----A--------------TATGTAG-AAATTGGTGGAAA.....................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................CAAC-----A--------------TATGTAG-AAATTGGTGGACTAA-----------------------------------------------------------------AG2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................GTGCGTCCAAACCCATTTAT--......................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................AAGATTAAAATAAAGGAGAC....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
................................................................................................TACTCAGTCAGGTGCGTCCAAA.................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................CCG-GTATT-TAGCTGAGAA------------------------------CAAGATTAAAA..............................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................AATACTCAGTCAGGTGCGTC.....................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................T-TAGCTGAGAA------------------------------CAAGATTAAA...............................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................AAATGTTCCG-GTATT-TAGCTA...........................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CCGTTACTCAGGTGG----TCCAAGTGGT.......................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................CCGTTACTCAGGTGG----TCCAAGTGGGAA.....................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................................................................................................................................................................................................................................................................................GA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................ATTTAT--ATAAAAATGTTCCG-G......................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................GACCGA-----------------------------------------GAATTTTCAAC-----A--------------TATGTAG-AA................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................TCCG-GTATT-TAGCTGAGAA------------------------------CAAGATT..................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................C-----A--------------TATGTAG-AAATTGGTGGACC.....................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................TCAAC-----A--------------TATGTAG-AAATTGGTG.........................................................................2211.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTCAATTAATA------------------------------------------------------CGTAATCG---AA.......................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................TTTAT--ATAAAAATGTTCCG-GT.....................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AACAACTTCAATTAATA------------------------------------------------------CGTAATCG---A........................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................AATGTTCCG-GTATT-TAGCTG...........................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................TTTCAAC-----A--------------TATGTAG-AAATTGGTGGACT.....................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................GCGTCCAAACCCATTTAT--ATAA..................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CAGCCTTAATAATAGAA--ATAGTAAACA------------------------------------------------------TGTATTCAAAATATACATAAATATTTTCTTAAAAACTTATATATTCCTAAAAATTGTCTG-GCATT-TA-------------------------------------------AAAGAACAAGATAGAATGCTATAGTCGAGTTCCCCGATTATCAGATACTTGTTACTCAGCTAG----TGAAAGTGCGCCCGA-----------------------------------------GAAATTTAA-T-----CA-TTTTTTGGAAGATCGGTAA-AAACTGCAAAAAA-ATATTAAAAAATGT--------------------AAA-----AG-TTTTC-AAAAGTGTGGG--CG--SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....................TAGTAAACA------------------------------------------------------TGTATTCAAAATATAC....................................................................................................................................................................................................................................................................................................................................................2511.0011000000
......................................................................................................................................................................................................................................................TTACTCAGCTAG----TGAAAGTGC........................................................................................................................................................................21200.2040000130
..............................................................................................................................................................................................................TAGAATGCTATAGTCGAGTTCCCC.................................................................................................................................................................................................................24200.0511000000
droYak3
CCT-----------------GAAATAAAA-AGTTATTGCATTCTTTC-------------------------------TCTCA-------------------------AATATC---------------AAA-AA------------TTTATATTAGATG------------------------------CTAATCAAAAACAAGAGAGAACGCTGTAGTCGAGTTCCCCGACTATCTGATACCCGTTACTCAGCTAA----TAGAAGTGCGAAGGA-----------------------------------------GAAATTTTAAGACAAACAGTTTTC-GGC------------GGCTTGTGAAAACATATCAAC---------------------------AC-----AT-TTTTC-AAAAGTGTGGA--CGTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................TGTAGTCGAGTTCCCCGACTATC..........................................................................................................................................................................................................23200.10200200000000
droEug1
AA---------------CTCAAATTAGTT------------------------------------------------------CGAAA--A---AATACTAAAACAGATTTTTCATTTC---TGTACTTAAAA-A------------AG-TAGCTAAAAA-----------------------------AGTAATTAAAAACAAGAGGAAACGCTATAGTCGAGTGCCGCGACTATAAGATACCCGTTACT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droBia1
TTT------------------AATAAAGACGTGAAACGCGTCCT----TAGTCAACTGACGGGACATTAGTTCGACTCATTAA-------------------------ATTAG-------------T--AAA------------CAATT-TTACTATATA------------------------------TATATATAAAACAATGAAGAACGCTATAGTCGAGTGCCTCGACTTTAAGATACCCGTTACTCAGCTGAATGGAGCAAAAGGGAA----ATGAAG----------------------------------------------------------------ATT--TAA-AAGCAGCAAAGCA-ATATTGTAAAGCGTCACCTAACCGCTATTTCAGTATA-----TG-T--T------CTGTGGGCGGCAGSizeHit CountTotal NormTotal
No Reads
droTak1
TAAAGATAATAAAGTACCACT-------------------CGCTTTTTTGAA-----------------------------CAGATACCAA---TATACTAAATTAATGGCGTCAAG---CTTTCAA--ATAAAA-------------A-TAACAACAAA-----------------------------TCAAAAATAAAACAAGAGAGAACGCTATAGTCGGGTGCCCCGACTATCAGATACCCGTTACTCAGCTAA----AGGGAGTGCGAAGGAGATGGAGAAAACACTTTCATCCGCCGTAAATTTTTAACGAATGGTCC--------------------------------------GATTTAAAAAATTTCTT---------------------------CT-----AC-ATTTCGATAGGTATTGA--TAAASizeHit CountTotal NormTotal
No Reads
droEle1
AAAAAATAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATAAAACAAGAATGACCTCTATAGTCGAGTTTCCCGAATATTAGATACCCGTTACTCAGCTAA----CAAATTTCAAACAAA-----------------------------------------ATATTCGCCCC-----AT-ATTTAAGA--------------------------AACAAATT---------------------------CTAACGCAGTTTTTC-AAAAGTCTAGG--CTGASizeHit CountTotal NormTotal
No Reads
droRho1
TAAAGTTTTTGGCGC--------------------------------------------------------------------CATAATAA---AGCCTTTAAACGTACATATTGAAACCTTTAAAA--AAAATA------------TT-AGGATTGGAGCGATTCGAAAATTTTTTGTAATGTAGAATTTACAAATAAAATAACAGTGAACGCTATAGTCGGATGCCCCGACTATCATATACCAGTTACTCAGCCAAA-GGTCCGATTTGAACAA---------------------------------------------TTTTGA-------------------------------ATGAGTATATTA-GTATTGA----TT---------TACAATTTTAC--AA-----AA-TCATT-TGAAATGCGG---CCAGSizeHit CountTotal NormTotal
No Reads
droFic1
TAGAGATGATCAAGCAACTTCAGATTATA------------------------------------------------------AAAAGTCA---ATTATTCAGTCAAGTAAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TGGAGATGATTAAGAATTTTCAGTTAATA------------------------------------------------------CGAAGTCG---ATTACTTGGTCAGGTGAGT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCGAAATGATACGACAACTTCAACTGATT------------------------------------------------------AGAAGTCG---CTTGCTTACACAGGCAAGTAACAGCGCGATTAT--ATA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads

Generated: 05/19/2015 at 02:38 AM