ID:

dsi_2528

Coordinate:

2r:5176508-5176657 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

Repeatable elements

Name	Class	Family	Strand
(CTG)n	Simple_repeat	Simple_repeat	+

Sense Strand Reads

CAACCATAACAACAACAGCGGCAACTGGCGAAACAACAACAGAGGCGCTGGTGGCTACAATAACAACTCCATTGGCAACGGGGGATGTCAGCGAAACCGTGTCCGTGGCGCCCAACAATGGTCATGGAAACGGGAGCCAACGTCCGCCGGTCCTGCAAACAAATTTATAGCTAAACGCACAACAATTGCAGCAGCAGCTGCTGAAGGAGCAGCAGCGACAACAAGCCGAGCTGCAGCAGCAACATCCGCA ************************************************.((((((................((...(((.((((((..((....((((.((((((((...........)))))))).))))..))..)))))).)))..))..............))))))...............((((....))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo
...........ACAACGGCGGCAACTGGCGTGA.........................................................................................................................................................................................................................	22	3	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................GTCCGCCGGCCCTGC..............................................................................................	15	1	11	0.18	2	0	0	2	0	0	0
...........................................................................................................................................................................................................AAGGAGTAGCAGCGTAAACAA..........................	21	3	6	0.17	1	1	0	0	0	0	0
.................................................................................................................................................................................................GCAGCTGCTGAAGGA..........................................	15	0	7	0.14	1	0	0	0	1	0	0
...................................................................................................................................GGGTGCTAACGTCCGTCG.....................................................................................................	18	3	20	0.10	2	0	0	0	0	2	0
.......................................................................................................................................GCCAACGACCGCCCGTC..................................................................................................	17	2	11	0.09	1	0	1	0	0	0	0
.....................................AACGGAGGCGCTTATGGCT..................................................................................................................................................................................................	19	3	16	0.06	1	0	0	0	0	0	1
..................................................................................................................................CGGGTGCTAACGTCCGTC......................................................................................................	18	3	19	0.05	1	0	1	0	0	0	0
.......................................................................................................................................GCCAACGACCGCCGG....................................................................................................	15	1	20	0.05	1	0	1	0	0	0	0
.........................................................................GCCAACGGGGGATGTA.................................................................................................................................................................	16	2	20	0.05	1	0	1	0	0	0	0

Anti-sense strand reads

GTTGGTATTGTTGTTGTCGCCGTTGACCGCTTTGTTGTTGTCTCCGCGACCACCGATGTTATTGTTGAGGTAACCGTTGCCCCCTACAGTCGCTTTGGCACAGGCACCGCGGGTTGTTACCAGTACCTTTGCCCTCGGTTGCAGGCGGCCAGGACGTTTGTTTAAATATCGATTTGCGTGTTGTTAACGTCGTCGTCGACGACTTCCTCGTCGTCGCTGTTGTTCGGCTCGACGTCGTCGTTGTAGGCGT ************************************************.((((((................((...(((.((((((..((....((((.((((((((...........)))))))).))))..))..)))))).)))..))..............))))))...............((((....))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M025 embryo	SRR618934 dsim w501 ovaries	M023 head	SRR553487 NRT_0-2 hours eggs
....................................................................................................CAGGCACCGCGGGTTGTTA...................................................................................................................................	19	0	1	1.00	1	1	0	0	0
.........................................................................................................ACCGCGGGTTGCTAGCAGT..............................................................................................................................	19	2	3	0.33	1	0	0	1	0
..............................................................................................................GGGTTGTTACCAGTAT............................................................................................................................	16	1	3	0.33	1	0	1	0	0
.....................................................................................................................................................................................................................................CGATGTCGTCGCTGTAGGCAT	21	3	4	0.25	1	0	0	0	1
........TGTTGTTGTCGCCGT...................................................................................................................................................................................................................................	15	0	20	0.10	2	0	2	0	0
........TGTTGTTGTCGCCGTCGCCCG.............................................................................................................................................................................................................................	21	2	13	0.08	1	0	1	0	0
.................................................................................................................................................................................GTCGTGTTAACGTCGTCGTC.....................................................	20	2	14	0.07	1	0	0	1	0
......................TTGAACGCTTTGTTG.....................................................................................................................................................................................................................	15	1	19	0.05	1	0	1	0	0
.......................................................ATGTTATTGTTTAGGT...................................................................................................................................................................................	16	1	20	0.05	1	0	1	0	0
.......TTGTTGTTGTCGCCGT...................................................................................................................................................................................................................................	16	0	20	0.05	1	0	1	0	0

Generated: 04/23/2015 at 11:28 AM