ID:

dsi_25275

Coordinate:

2r:5648365-5648589 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

-15.1	-14.8	-14.7

Flybase annnotation

five_prime_UTR [2r_5648590_5648694_+]; exon [2r_5648590_5648794_+]

No Repeatable elements found

Sense Strand Reads

-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCAGACAGAAAATGGTAGTTCAAAACTTTTACAGTGGCAAATATAATTAAAGAAAATCAAATTAAAACCCAAAGCGGAAAATGGTGTGACCGTTTCAGAAGCGAATTTAAATCTCGCGCTCAAATGTCAATGCTGCCACACCATCGGAAATCTGTATTCGAAAAATTTTTACTGATTCTTTAAGTTGTCAAATATTTCAGGCCCAGCAACCTGGGACAAAGCCATCTATAGAAAATATAAATTGAACGAGTAACCTAACAAAAAGTGTCTGTCAGCTGTTTTCCGTCGAAAAAAGTGCTGTTTTCCAACACTTTGTTTGCAGTCA ***********************************************************************.......((((((((..(((((.((..((((.........)))).)).)))))..........))))))))........***************************************************************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553487 NRT_0-2 hours eggs	O001 Testis	SRR902009 testis	M023 head	M025 embryo	SRR553488 RT_0-2 hours eggs	SRR902008 ovaries	GSM343915 embryo	SRR553486 Makindu_3 day-old ovaries
...............................................................................................................................................................................................................................................................TAACAAAAAGTGTCTGTCAGCTGTT.............................................	25	0	1	2.00	2	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................TAACCTAACAAAAAGTGTCTGTCAGC.................................................	26	0	1	1.00	1	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TCCGTCGAAAAAAGTGCT..........................	18	0	1	1.00	1	0	0	0	0	1	0	0	0	0
.........................................................................GCGGAAAATGGTGTGACCG.........................................................................................................................................................................................................................................	19	0	1	1.00	1	0	0	1	0	0	0	0	0	0
..................................................................ACCCAAAGCGGAAAATGGTGTGACCG.........................................................................................................................................................................................................................................	26	0	1	1.00	1	0	0	0	1	0	0	0	0	0
................................................................AAACCCAAAGCGGAAAAT...................................................................................................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................TATAGAAAATATGAATTGAAAG.............................................................................	22	2	1	1.00	1	0	0	0	0	0	1	0	0	0
......................................................................................................................................GCCACACCATCGGAAATC.............................................................................................................................................................................	18	0	1	1.00	1	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................AAATTGAACGAGTAACCTAAC..................................................................	21	0	1	1.00	1	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................AACAGAAATTGAACGAGTA.........................................................................	19	2	2	0.50	1	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................CGAACAACAAGTGTCTGTCTGC.................................................	22	3	2	0.50	1	0	0	0	0	0	0	0	1	0
...................................................................................................................................................................AATTTTTACTGATTCTTGCACT............................................................................................................................................	22	3	4	0.25	1	1	0	0	0	0	0	0	0	0
.........................................................CAAAGTAAAACCTAAAGGGGA.......................................................................................................................................................................................................................................................	21	3	6	0.17	1	0	0	0	0	0	0	0	0	1
.........................................................................................................................................................................................................................................AATATAAATTGACCG.............................................................................	15	1	17	0.06	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTCTTCAAGTTGTGAAAT....................................................................................................................................	18	2	20	0.05	1	0	0	0	1	0	0	0	0	0
.................................................................................TGGTTTGACCGTTCCA....................................................................................................................................................................................................................................	16	2	20	0.05	1	0	0	0	0	0	0	0	0	1

Anti-sense strand reads

CGTCTGTCTTTTACCATCAAGTTTTGAAAATGTCACCGTTTATATTAATTTCTTTTAGTTTAATTTTGGGTTTCGCCTTTTACCACACTGGCAAAGTCTTCGCTTAAATTTAGAGCGCGAGTTTACAGTTACGACGGTGTGGTAGCCTTTAGACATAAGCTTTTTAAAAATGACTAAGAAATTCAACAGTTTATAAAGTCCGGGTCGTTGGACCCTGTTTCGGTAGATATCTTTTATATTTAACTTGCTCATTGGATTGTTTTTCACAGACAGTCGACAAAAGGCAGCTTTTTTCACGACAAAAGGTTGTGAAACAAACGTCAGT ***************************************************************************************************************************************************************************.......((((((((..(((((.((..((((.........)))).)).)))))..........))))))))........***********************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902009 testis	SRR553487 NRT_0-2 hours eggs	SRR902008 ovaries	M025 embryo	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	GSM343915 embryo
........................................................................................................................................GTGTGGTAGCCTTTAGACAT.........................................................................................................................................................................	20	0	1	1.00	1	1	0	0	0	0	0	0
................................................................................TACCACACTGGCAAAGTCTTC................................................................................................................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTTCACAGACAGTCGACAAAA...........................................	21	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TAGGCAGCTGTTTTCAAGACAAA......................	23	3	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................TTTCACAGACGGTCGACAA.............................................	19	1	2	0.50	1	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................GGCAGCTGTTTTCAAGACAA.......................	20	2	3	0.33	1	0	1	0	0	0	0	0
...................................................................................................................CGCGAGTTTACAGCTACAA...............................................................................................................................................................................................	19	2	3	0.33	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................TTTTACACAGAATGTCGACA..............................................	20	3	18	0.33	6	6	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GACGGAAGGTTGTGAAGCAAA.......	21	3	7	0.14	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................TTGCTCATTGGAGCG..................................................................	15	2	20	0.10	2	0	0	0	0	2	0	0
...............................................................................TTACCAAACTGGCAAGGTG...................................................................................................................................................................................................................................	19	3	12	0.08	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................GGAGCTTTTTTAACGACA........................	18	2	17	0.06	1	0	0	0	0	0	0	1
..........................................................................................................................................................................TGACTAAAAAATTCAA...........................................................................................................................................	16	1	19	0.05	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................AATGTCGGGGTCGTTGG..................................................................................................................	17	2	20	0.05	1	0	0	0	0	1	0	0

Generated: 04/23/2015 at 08:42 PM