ID:

dsi_25262

 Coordinate:

3l:4064133-4064282 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-35.0 -34.9 -34.9

Flybase annnotation

Antisense to five_prime_UTR [3l_4063951_4064624_+]; Antisense to exon [3l_4063951_4067508_+]

No Repeatable elements found

Sense Strand Reads

TCCAACAAGCCGAGTAATCCAGATCAAAATCGGTGGATGTAGAGATGGTGGTATGTATGACGATAAAAGGGGGGAAAGGCGGGGAAGGTGCGGATCACTTGATTAACACACGCCCAAGGTTACGATTTGATGGCTTGCTTGCTGCTGCTTGGGATGTTTTGTTTTCCCGATCTCTCTCGCAATCGTAATTCGCAGCGTTTTCCTCGCGCTTTTCCTCGCACATCAACACACCGACGAACACTAATGCACG
**************************************************...(((...(((((.....((((((....(((((((((((..((((....))))..)))(((((((((.............(((......)))....)))))).)))....))))))))...))))))...))))).....)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 O002
Head
 SRR1275485
Male prepupae		 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 SRR1275483
Male prepupae
...................................................................................................................AAGGTTACGATTTGATGGCTTT................................................................................................................. 22 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0
.......................................................................................................................TTACGATTTGATGGCTTGTTA.............................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0
............................ATCGGTGGATGTAGAGATGGTGGTATGTA................................................................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
................................GTGGATGTAGAGATGGTTT....................................................................................................................................................................................................... 19 2 3 1.00 3 3 0 0 0 0 0 0 0 0 0
.............................................................................................................................TTTGATGGCTTGCTTGCTGCT........................................................................................................ 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0
...................CAGATCAAAATCGGTGGATG................................................................................................................................................................................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.................TCCAGAGCAGACTCGGTGGAT.................................................................................................................................................................................................................... 21 3 1 1.00 1 0 1 0 0 0 0 0 0 0 0
.......................................TAGAGATGGTGGTATGTATGA.............................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
........................................................................................................................TACGATTTGATGGCTTGCTTG............................................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................CCTCGCGCTTTTCCTCGCACA............................ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0
..................................................................................................................CGGGGTTGCGATTTGATGGCT................................................................................................................... 21 3 2 0.50 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................................................................................ATCTACAGTCCGACGAACA.......... 19 3 18 0.50 9 9 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AACAGTCCGACGATCACTA....... 19 3 16 0.38 6 5 0 0 0 0 0 1 0 0 0
..........................................................GACGATAAAACGGGTGAGA............................................................................................................................................................................. 19 3 19 0.32 6 0 0 0 0 0 6 0 0 0 0
..........................................................................................................................................................................................................................CACATCTACAGTCCGACGAA............ 20 3 7 0.14 1 0 0 0 0 0 0 1 0 0 0
.......................TCAAAATCATGGGATGTAGA............................................................................................................................................................................................................... 20 3 8 0.13 1 0 0 0 0 0 0 0 1 0 0
.......................................................................................ACGCGGATGACTTGATTAAC............................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 0 1 0
.............................................................................................................................................................................................................................ATCTACAGACCGACGATCA.......... 19 3 18 0.11 2 2 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................ATCTACACTCCGACGATCA.......... 19 3 11 0.09 1 1 0 0 0 0 0 0 0 0 0
.............GTAATCCAGATCAGCAT............................................................................................................................................................................................................................ 17 2 14 0.07 1 0 0 0 0 0 1 0 0 0 0
.............................................................................................................................................................................................................................ATCTACACTCCGACGA............. 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0
.......................................................................................................................GTACGATTGGATGGCTT.................................................................................................................. 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 1
................................................................................................................................................................................................................................AACAGACCGACGATCA.......... 16 2 20 0.05 1 1 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

##########################################################################################################################################################################################################################################################
AGGTTGTTCGGCTCATTAGGTCTAGTTTTAGCCACCTACATCTCTACCACCATACATACTGCTATTTTCCCCCCTTTCCGCCCCTTCCACGCCTAGTGAACTAATTGTGTGCGGGTTCCAATGCTAAACTACCGAACGAACGACGACGAACCCTACAAAACAAAAGGGCTAGAGAGAGCGTTAGCATTAAGCGTCGCAAAAGGAGCGCGAAAAGGAGCGTGTAGTTGTGTGGCTGCTTGTGATTACGTGC
**************************************************...(((...(((((.....((((((....(((((((((((..((((....))))..)))(((((((((.............(((......)))....)))))).)))....))))))))...))))))...))))).....)))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 M023
head
 M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 GSM343915
embryo
 M053
female body
 O001
Testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 O002
Head
 SRR553488
RT_0-2 hours eggs
..........................................................................................................................................................................................TCAAGTGTCGCAAATGGAG............................................. 19 3 18 52.00 936 763 156 10 0 0 0 7 0 0 0 0 0 0
..............................................................................................................................................................................................................................AGTTGTGTGGCTGCTTGTGATT...... 22 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................AGGGCTAGAGAGAGCGTTA................................................................... 19 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................TTAGCATTAAGCGTCGCAAAAGGAG............................................. 25 0 1 2.00 2 0 0 0 0 0 0 0 0 2 0 0 0 0
.................................................................................................................................................................................................................................TGTGTGGCTGCTTGTGATTAC.... 21 0 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0 0 0
...............................................................................................................CGGGTTCCAATGCTAAACTAC...................................................................................................................... 21 0 1 2.00 2 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................TGTGGCTGCTTGTGATTACGT.. 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
...........................................................................................................................................................................................................AGCGCGAAAAGGAGCGTGTAGTTGTGT.................... 27 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................CGCAAAAGGAGCGCGAAA...................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 0 1 0
........................................................................................................................................................................................................AGGAGCGCGAAAAGGAGCGTGTAGTTG....................... 27 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................................................................TTAAGTGTCGCAAATGGAG............................................. 19 2 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................TCCAGTGCTAAACTACCGAAC................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................GTTAGCATTAAGCGTCGCAA................................................... 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.GGTTGTTCGGCTCATTAGG...................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................................................................GACGACGAACCCTACAAAACAAA...................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
......TTCGGCTCATTAGGTCTAGTTT.............................................................................................................................................................................................................................. 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................TTGTGTGGCTGCTTGTGA........ 18 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTGGCTGCTTGTGATTACGT.. 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................GTAGTTGTGTGGCTGCTTG........... 19 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
...................................CTACATCTCTACCACCATACATACT.............................................................................................................................................................................................. 25 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................TGCGGGTTCCAATGCTAAACTA....................................................................................................................... 22 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCAAGTGTCGCAAATGGAGC............................................ 20 3 5 1.00 5 2 3 0 0 0 0 0 0 0 0 0 0 0
.......TCGGCTCATTAGGTCTAGTTT.............................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................GTGGCTGCTTGTGATTACG... 19 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CAGGTTCCAATGCTAAACTAC...................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................CGAAAAGGAGCGTGTAGTTG....................... 20 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0 0
.........................................................................................................................................................TACAAAACAAAAGGGCTAGAGCGTT........................................................................ 25 3 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
AGGTTGTTCGGCTCATTAGGTCTAGT................................................................................................................................................................................................................................ 26 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0 0
...............................................................................................................CGGGTTCCAGTGCTAAACTAC...................................................................................................................... 21 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGGAGCGCGAAAAGGAGCG............................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..................................................................................................................GTTCCAATGCTAAACTACCGA................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0 0
.............................................ACCACCATACATACTGCTATTTT...................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................AGGAGCGCGAAAAGGAGCGTGTAG.......................... 24 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0 0
..........................................................................................................................................................................................TCAAGTGTCGCAAAGGGAG............................................. 19 3 20 0.40 8 6 2 0 0 0 0 0 0 0 0 0 0 0
..........................TTTAGGCACCGAGATCTCTA............................................................................................................................................................................................................ 20 3 3 0.33 1 0 0 0 1 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................TCAAGCGTCGCAAATGGAGG............................................ 20 3 7 0.29 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................AGAGCGTGTAGTTGTGT.................... 17 1 4 0.25 1 0 0 0 0 0 0 0 0 0 1 0 0 0
...........................................................................................................................................................................................CAAGCGTCGCAAATGGAG............................................. 18 2 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0 0
......................................CATCTCTAGCAGCCTACATA................................................................................................................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................GTCAAGTGTCGCAAAAGGAG............................................. 20 3 15 0.13 2 2 0 0 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................................GCTATAGAGAGCGTTTG.................................................................. 17 2 8 0.13 1 0 0 0 0 0 0 0 0 0 1 0 0 0
..........................................................................................................................................................................................TCAAGTGTCGCAAAAGGA.............................................. 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GGATGCAATGCTAAACT........................................................................................................................ 17 2 9 0.11 1 0 0 0 0 0 0 0 0 0 0 0 0 1
.....................................................................................................................................................................................................................GGAGCGTGTTGTTGTGT.................... 17 1 9 0.11 1 0 0 0 0 0 0 0 0 0 0 1 0 0
.....................................................................................................................................................................................................................................TCGCTGCTCGTGATCACGT.. 19 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................GTGCGGGTTCCAAAGCG............................................................................................................................. 17 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................GCCTAGAGACCTACTTGTG............................................................................................................................................. 19 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................................................................................................................GTGCTAAAAGGAGCGTGAAG.......................... 20 3 19 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0
......................................................................................................................................................................GGCTATAGAGAGCCTTGG.................................................................. 18 3 20 0.05 1 0 0 0 0 0 0 0 0 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:4064083-4064332 - dsi_25262 TC-CAACA--------AGCCGAGTAATCCAGATCA--AAATCGGTGGATGT--------------------AGAGATGGTG---GTA-------TGTATGACGATAAAAG-----G-------------GG-GGAAAGGCGGGGAAG----GTG---------------------------CGGATCACTTGATTAACA--CACGCCCAAGGTTACGATT---TGATGGCTTGC--TTGCTGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTCGCAATCGT--------------------AATTCGCA---GCGTTTTC-CTC--------------GCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACG
droSec2 scaffold_2:4096196-4096446 - TC-CAACA--------AGTCGAGTAATCCAGATCA--AAATCGGTGGATGT--------------------AGAGATGGTG---GTA-------TGTATGACGATAAAAG-----G-------------GG-GGAAAGGCGGGGAAG----GTA---------------------------CGGATCACTTGATTAACA--CACGCCCAAGGTTACGATT--TTGATGGCTTGC--TTGCTGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTCGCAATCGC--------------------AATTCGCA---GCGTTTTC-CTC--------------CCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACG
dm3 chr3L:4103696-4103949 - TC-CAACA--------AGCCGAGTAATCCAGATCA--AAATCGTTGGATGT--------------------AGAGATGGTGGTGGTA-------TGTATGATGATAAAAG-----G-------------GGGGGAGAGGCGGGGA-T----GTA---------------------------CGGATCACTTGATTAACA--CACGCCCAAGGTTACGATT--TTGATGGCTTGC--TTGCTGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTAGCAATCGC--------------------AATTCGCA---GCGTTTTC-CTC--------------GCTCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACG
droEre2 scaffold_4784:6812486-6812709 - TC-CAACA-----------------AACCAGATCA--AAATCGACGGATGT--------------------GGA---------GGTA-------TGTACAACGATAAAAG-----G-------------G--GGAAAGGCGGGGA-A----GTA---------------------------CGGATCACTTTATTAACA--CACGCCCAAGGTTATGATT--TCGATGGCTGGC------TGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------C----------------CTCTCTC------GC--------------------AATTCGCA---GCGTTTTT-CTC--------------GCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACG
droYak3 3L:4674353-4674586 - TC-CAACA--------AAACGAGTAATCCAGATCA--AAATCGGTGGATGT--------------------GGA---------GGTA-------TGTATGTAGATAAAAG-----G-------------GG-GGAGAGGCGGGGA-G----GTA---------------------------CGGATCACTTGATTATCA--CACGCCCAAGGTTATGATT--TTGATGGCTTGC------TGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTC------GC--------------------AATTCGCA---GCGTTTTC-CTC--------------GCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCAGA
droEug1 scf7180000409466:1869256-1869488 - TA-CAGCA-------------AGTAGTCCAGATCA--AAATCGGTAGA-----------------------------------AGTA-------TTTCTG--GATAACGG--GGGAAATGTCGGCGAAG--GGGAG-----GG-C-G----GTA---------------------------CGGATCACTCGATTAATA--CACGCCCAAGGTTATGATT--TTTATGGGTTGT-GTTGCTGCTGC-T---------------CGG--------------------------------GATGTTTTGTTTTCTCCGCAA-------T----------------CTCTCTC------GC--------------------AATTCGAA---GCGTCGT--------------------CGCCTTTCCT--CGCACATCAACACACCGACCAACACTAATGCACG
droBia1 scf7180000302428:800658-800899 - CA-CAACA--------AGCCCCGCAGTCCAGATCG--AAATCGGTGGA-----------------------------------AGAATGCGCGGTGCGCGGCGATAAGGG-----G-------------T----------GGGG--------TG--------------------------GGGGATCGCTTGATTAATA--CACGCCCAAGGTTATGACT--TCGATGGCTTGT------T---GC-TCGGGCTGCCGC----GGT--------------------------------GATGTTTTGTTTTC-CCT----CTGCGATAG--------------CTCTCT----GCTGC--------------------TGCTCGCA---GCGTTTTCTCTC--------------GCGCTTTTCCT--CGCACGTCAACACACCGACGAACACTGATGCAGG
droTak1 scf7180000415778:72018-72254 + ---------------------AGTAATCCAGATCGGAAAATCGGCCCA-----------------------------------AGAATGT-C--TGTATGTAGATAAACT-----A-----CGGGTAAGGA-GG--AGGCGGAG-------GGG---------------------------GGGATCACTCGATTAATA--CACGCCCAAGGTTATGATT--TTAATGGCTTGT------T---GC-T---------------T----------------------------------GATGTTTTGTTTTC-A-T--CTCT-TGCTCGCTCTCCTTCTCTCTCTCTCTCGCGC---T--------------------AATTTTCA---GCGT-------------------------CTTTTCCTCGCGCTTGTCAACACACCGAAGAATACTAAGGCACG
droEle1 scf7180000491249:4952878-4953101 - TTCCAACA-----GCAAGCCAAGTAATCCAGATCA---AATCGG---ATG----------------------------G---------------------------------------------------------GGGCGGGGG-GGTGTGGA---------------------------GGGATCACTCGATTAATA--CACGCCCAAGGTTATGATT--TTAATGGGTTGCTGTTGCTGCTGC-T------GTCGCTGCTTGGGATA--------------TGACGA--------GATGTTTTGTTTTCTCCG--A-------T----------------CTC--GC------GC--------------------AATTCGCA---GCGT-----------------------CGCTTTTCCT--CGCACGTCAACACACCGACCAACACTAATGCACG
droRho1 scf7180000779198:54037-54243 + GCGCAACC--------GTCCAAGTAATCCAGATCG--AA-----------------------------------------------------------------TG--AGGGGGGAAA--------------------TCGGAGG--------A---------------------------GGGATCACTTGATTAATA--CACGCCCAAGGTTATGATT--TTAATGGGTTG------------C-T---------------TGGGATATGCTGGCTATGCGATGACGA--------GATGTTTTGTTTTT--CG--A-------T----------------CTC--TC------GC--------------------AATTCGCA---GCGT-----------------------CGCTTTTCCT--CGCACGTCAACACACCGACCAACACTAGTGCACG
droFic1 scf7180000454113:1332473-1332689 - TC-GA----------------AGTAATCCCAATCG--AAATCGGGGGTTG-----------------------GAATGG------------------------------GCGGGGAAA--------------------TCGGCGG-A----GTG---------------------------CGGATCACTCGACTAATA--CACGCCCAAGGTTATGATTTTTTAATGGCTTGT------T---GCGTTGGGA-------------------------------TGACGACAATGTTGTGTGTGTTGTTTTCCCCG--A-------T----------------CTCTCTC------GC--------------------AAATTGGA---GCGT-----------------------CGCTTTTCCT--CGCACGTCAACACACCGACTAACACTTGTGCACG
droKik1 scf7180000302388:245999-246291 + GC-CAGAAGCGTAGTGGCGATGGTAATCCCAATCA-AAAATCGGCT---ACGACGACACCTCTCCACTTGGGACGCGGGAGG-AG-G--GGCG-GACACGGTGCGGATGG-----G--------GGAGG--GGGCGACGCGGAAA--------G-----CGGAT---CGCGGTTCGCGGATAGGAACGCTCAATTAATACACACGCCCAAGGTTGCGATG---AGA------------------------------------------------------------------------TATGTTTTGTTTGG--CA--CTCT-CGCTCGCGCTTCTGAT----CTCGTTC------GCTGCTCTGGCGTCTC----------TGCG---GTGC----------------------GTTGTTTTCCT--CGCACAGAGGCG-ACCGACCAATACTACTGCACG
droAna3 scaffold_13337:7144023-7144257 - TA-CAGAAAC--AGCCGTGTCCGTAATCCAAATCA--AAATCGGCT---ACGACGACA--GCTCCGCT----------------------------TGGGACGATGGGAG-----AAGGAGAGGTGAGG--GGGCG-----GG-C-G----TCG-C-----------------------AGAGGAACGCTCAATTAATA--CACGCCCAAGGTTGCTTT----TG-TT-----------------------------------------------------------------------GTTTGTTGTTTTCTCCG--C-------A----------------CTCTATCGTGC--TCAGCTCTCGGTTCTCGATTATAAACTGGCGCGACGC-----------------------TTGTTTTCCG--CG-----------ATCGACGACCGCT------CG
droBip1 scf7180000396418:151297-151544 - TA-CAGAAAC--AGCCGTGTCCGTAATCCAAATCA--AAATCGGCT---ACGACGACA--GCTCCGCATGGGACGAGGGGA---GTG--TGC--GGTATGGTGAGGAGAG-----G--------TGAGG--GGGCG-----GG-C-G----TCG-C-----------------------AGAGGAACGCTCAATTAATA--CACGCCCAAGGTTGCTTT----TG-TT-----------------------------------------------------------------------GTTTGTTGTTTTCTCCG--C-------A----------------CTCTCTCGTGC--TCAGCTCTCGGTTCTCGATTATAAACTGGCGCGTCGT-----------------------TTGTTTTCCG--CG-----------ATCGACGACCGCT------CG
dp5 XR_group6:6368611-6368740 + TC-GGTCA------------------CTTGGGGCG----------GGAGGT--------------------GGAGATGGTG---G------------------------A-----G-------------GA-GGAGGGGTAGAGGAG----ATGTCAGAAGAATTGCTGGGGCTAGCTGCTTGAAGCGAGTAATTAATA--CACGCCCAAGGTTATGAT-------------------------------------------------------------------------------GATGTTTTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_82:229206-229332 - TC-GGTCA------------------CTTGGGGCG----------GGAGGT--------------------GGAGATGG------------------------------A-----G-------------GA-GGAGGGGTAGAGGAG----ATGTCAGAAGAATTGCTGGGGCTAGCTGCTTGAAGCGAGTAATTAATA--CACGCCCAAGGTTATGAT-------------------------------------------------------------------------------GATGTTTTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:15316166-15316277 + TT-TTGTTTC-----------CCTCTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCACAGTA--AATGCTCAAGGTTATCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---GCGTTCTT-TCCGAGGAGGTGGAGACGTCGTTGTCGT--CCCACGGCA------CAACAAATACTAATGAATG
droMoj3 scaffold_6680:21542676-21542694 - -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAATACTAATGAATG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TC-CAACA--------AGCCGAGTAATCCAGATCA--AAATCGGTGGATGT--------------------AGAGATGGTG---GTA-------TGTATGACGATAAAAG-----G-------------GG-GGAAAGGCGGGGAAG----GTG---------------------------CGGATCACTTGATTAACA--CACGCCCAAGGTTACGATT---TGATGGCTTGC--TTGCTGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTCGCAATCGT--------------------AATTCGCA---GCGTTTTC-CTC--------------GCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
................................................................................................................................................................................................................AAGGTTACGATT---TGATGGCTTT.....................................................................................................................................................................................................................................2212.00200000000000002000
.......................................ATCGGTGGATGT--------------------AGAGATGGTG---GTA-------TGTA............................................................................................................................................................................................................................................................................................................................................................................2911.00100000000000001000
...........................................GTGGATGT--------------------AGAGATGGTT---T.........................................................................................................................................................................................................................................................................................................................................................................................1931.00300000000000003000
..........................................................................................................................................................................................................................TT---TGATGGCTTGC--TTGCTGCT..........................................................................................................................................................................................................................2111.00100000000000000010
............................CAGATCA--AAATCGGTGGATG............................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000001000000
..................................................T--------------------AGAGATGGTG---GTA-------TGTATGA.........................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................TACGATT---TGATGGCTTGC--TTG...............................................................................................................................................................................................................................2111.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................C-CTC--------------GCGCTTTTCCT--CGCACA............................2111.00100000100000000000
droSec2
TC-CAACA--------AGTCGAGTAATCCAGATCA--AAATCGGTGGATGT--------------------AGAGATGGTG---GTA-------TGTATGACGATAAAAG-----G-------------GG-GGAAAGGCGGGGAAG----GTA---------------------------CGGATCACTTGATTAACA--CACGCCCAAGGTTACGATT--TTGATGGCTTGC--TTGCTGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTCGCAATCGC--------------------AATTCGCA---GCGTTTTC-CTC--------------CCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........................................GTGGATGT--------------------AGAGATGGTG---GTA-------................................................................................................................................................................................................................................................................................................................................................................................2111.0010001
dm3
TC-CAACA--------AGCCGAGTAATCCAGATCA--AAATCGTTGGATGT--------------------AGAGATGGTGGTGGTA-------TGTATGATGATAAAAG-----G-------------GGGGGAGAGGCGGGGA-T----GTA---------------------------CGGATCACTTGATTAACA--CACGCCCAAGGTTACGATT--TTGATGGCTTGC--TTGCTGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTAGCAATCGC--------------------AATTCGCA---GCGTTTTC-CTC--------------GCTCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................TGC--TTGCTGCTGC-T---------------TGG--------------------------------GATG................................................................................................................................................................2116.0060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000100000000000001010000000000000000000000000000000020
............................................TGGATGT--------------------AGAGATGGTGGTGG.........................................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010
......................................AATCGTTGGATGT--------------------AGAGATGG...............................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................AATTCGCA---GCGTTTTC-CTC--------------GC.............................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................CCAAGGTTACGATT--TTGATGG.........................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................A-T----GTA---------------------------CGGATCACTTGATTA..........................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................AAGGTTACGATT--TTGATGGCT.......................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020
..........................................GTTGGATGT--------------------AGAGATGGT..............................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000
............................................................................................................AG-----G-------------GGGGGAGAGGCGGGGA-T----G......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..........................................................................................................................................................................................................................TT--TTGATGGCTTGC--TTGCTGC...........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................GCTGCTGC-T---------------TGG--------------------------------GATGTT..............................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GC--TTGCTGCTGC-T---------------TGG--------------------------------GATG................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................TTGGATGT--------------------AGAGATGGTGTG...........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTC--------------GCTCTTTTCCT--CGCACAT...........................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................AGCCGAGTAATCCAGATCA--A........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTGTTTTC-CCG--A-------T----------------CTCTCTAG...............................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.............................................GGATGT--------------------AGAGATGGTGGTGGT........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTTTCCT--CGCACATCAACACACCG.................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
........................................................................................................................................................................................................................................................................................................................................................................................................TTTTC-CTC--------------GCTCTTTTCCT--CG................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTGC--TTGCTGCTGC-T---------------TGG--------------------------------GA..................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GGGA-T----GTA---------------------------CGGATCACTTGAT............................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................ATGGCTTGC--TTGCTGCTGC-.......................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GTTACGATT--TTGATGGCTTGC--AA................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................G-----G-------------GGGGGAGAGGCGGGGA-............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................ATGGTGGTGGTA-------TGTATGATG.......................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................A-------TGTATGATGATAAAAG-----G-------------GG...........................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................CCGAGTAATCCAGATCA--AAATC....................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.....................................................................................TA-------TGTATGATGATAAAAG-----G-------------GG...........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCCT--CGCACATCAACACACCG.................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................ATGATGATAAAAG-----G-------------GGGG.........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................ATGTTTTGTTTTC-CCG--A-------T----------------CTC....................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....ACA--------AGCCGAGTAATCCAGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................................................................................................................................................................................ATTCGCA---GCGTTTTC-CTC--------------GCT............................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................GATGGTGGTGGTA-------TGTATGAT........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TGT--------------------AGAGATGGTGGTGGTA-------TG..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
................................................................................................................................................................................................................................................................................................................................................................................................................C--------------GCTCTTTTCCT--CGCACATC..........................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CT--CGCACATCAACACACCGAC...............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................TGTTTTGTTTTC-CCG--A-------T----------------CTC....................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.........................................................................................................................................................................................................................................C--TTGCTGCTGC-T---------------TGG--------------------------------GATGTT..............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................CGGGGA-T----GTA---------------------------CGGATCACTTGA.............................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................G-----G-------------GGGGGAGAGGCGGGGA-T----G......................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................GC--TTGCTGCTGC-T---------------TGG--------------------------------GATGC...............................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................TTGGATGT--------------------AGAGATGGTGGTG..........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................TTGC--TTGCTGCTGC-T---------------TGG--------------------------------GATG................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...........................................................................................................................................................................................................................T--TTGATGGCTTGC--TTGCTGCT..........................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................GGTA-------TGTATGATGATAAAAG-----G-------------.............................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TTC-CTC--------------GCTCTTTTCCT--CGCA..............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................AGGTTACGATT--TTGATGGCTT......................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
...........................................................................................................AAG-----G-------------GGGGGAGAGGCGGGGT-A----.......................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................CAAGGTTACGATT--TTGATGGC........................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................AG-----G-------------GGGGGAGAGGCGGGGA-T----.......................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................................TTGGATGT--------------------AGAGATGGTGGTGT.........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................AAG-----G-------------GGGGGAGAGGCGGG...............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
...................................................................................................................................................................................................................................................TGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-.....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.........................................CGTTGGATGT--------------------AGAGATGGTGGT...........................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...............................................................................................................................................................................................................................................................................................................TTTGTTTTC-CCG--A-------T----------------CTCTCTAGCAAT...........................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................TTTC-CTC--------------GCTCTTTTCCT--CGC...............................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................GCTGC-T---------------TGG--------------------------------GATGTTTTG...........................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................CTAGCAATCGC--------------------AATTCGCA---GC.......................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AATCCAGATCA--AAATCGTTGG...............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.......................................................................AGAGATGGTGGTGGTA-------TGTG............................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...................................................................................................................................................................................................................GTTACGATT--TTGATGGCT.......................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................A-------TGTATGATGATAAAAG-----G-------------GGG..........................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................ATCGTTGGATGT--------------------AGAGATGGT..............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
......................................................................................A-------TGTATGATGATAAAAG-----G-------------GGGT.........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.........................................CGTTGGATGT--------------------AGAGATGGT..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ATCCAGATCA--AAATCGTTGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
droEre2
TC-CAACA-----------------AACCAGATCA--AAATCGACGGATGT--------------------GGA---------GGTA-------TGTACAACGATAAAAG-----G-------------G--GGAAAGGCGGGGA-A----GTA---------------------------CGGATCACTTTATTAACA--CACGCCCAAGGTTATGATT--TCGATGGCTGGC------TGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------C----------------CTCTCTC------GC--------------------AATTCGCA---GCGTTTTT-CTC--------------GCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCACGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads
droYak3
TC-CAACA--------AAACGAGTAATCCAGATCA--AAATCGGTGGATGT--------------------GGA---------GGTA-------TGTATGTAGATAAAAG-----G-------------GG-GGAGAGGCGGGGA-G----GTA---------------------------CGGATCACTTGATTATCA--CACGCCCAAGGTTATGATT--TTGATGGCTTGC------TGCTGC-T---------------TGG--------------------------------GATGTTTTGTTTTC-CCG--A-------T----------------CTCTCTC------GC--------------------AATTCGCA---GCGTTTTC-CTC--------------GCGCTTTTCCT--CGCACATCAACACACCGACGAACACTAATGCAGASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEug1
TA-CAGCA-------------AGTAGTCCAGATCA--AAATCGGTAGA-----------------------------------AGTA-------TTTCTG--GATAACGG--GGGAAATGTCGGCGAAG--GGGAG-----GG-C-G----GTA---------------------------CGGATCACTCGATTAATA--CACGCCCAAGGTTATGATT--TTTATGGGTTGT-GTTGCTGCTGC-T---------------CGG--------------------------------GATGTTTTGTTTTCTCCGCAA-------T----------------CTCTCTC------GC--------------------AATTCGAA---GCGTCGT--------------------CGCCTTTCCT--CGCACATCAACACACCGACCAACACTAATGCACGSizeHit CountTotal NormTotal
No Reads
droBia1
CA-CAACA--------AGCCCCGCAGTCCAGATCG--AAATCGGTGGA-----------------------------------AGAATGCGCGGTGCGCGGCGATAAGGG-----G-------------T----------GGGG--------TG--------------------------GGGGATCGCTTGATTAATA--CACGCCCAAGGTTATGACT--TCGATGGCTTGT------T---GC-TCGGGCTGCCGC----GGT--------------------------------GATGTTTTGTTTTC-CCT----CTGCGATAG--------------CTCTCT----GCTGC--------------------TGCTCGCA---GCGTTTTCTCTC--------------GCGCTTTTCCT--CGCACGTCAACACACCGACGAACACTGATGCAGGSizeHit CountTotal NormTotal
No Reads
droTak1
---------------------AGTAATCCAGATCGGAAAATCGGCCCA-----------------------------------AGAATGT-C--TGTATGTAGATAAACT-----A-----CGGGTAAGGA-GG--AGGCGGAG-------GGG---------------------------GGGATCACTCGATTAATA--CACGCCCAAGGTTATGATT--TTAATGGCTTGT------T---GC-T---------------T----------------------------------GATGTTTTGTTTTC-A-T--CTCT-TGCTCGCTCTCCTTCTCTCTCTCTCTCGCGC---T--------------------AATTTTCA---GCGT-------------------------CTTTTCCTCGCGCTTGTCAACACACCGAAGAATACTAAGGCACGSizeHit CountTotal NormTotal
No Reads
droEle1
TTCCAACA-----GCAAGCCAAGTAATCCAGATCA---AATCGG---ATG----------------------------G---------------------------------------------------------GGGCGGGGG-GGTGTGGA---------------------------GGGATCACTCGATTAATA--CACGCCCAAGGTTATGATT--TTAATGGGTTGCTGTTGCTGCTGC-T------GTCGCTGCTTGGGATA--------------TGACGA--------GATGTTTTGTTTTCTCCG--A-------T----------------CTC--GC------GC--------------------AATTCGCA---GCGT-----------------------CGCTTTTCCT--CGCACGTCAACACACCGACCAACACTAATGCACGSizeHit CountTotal NormTotal
No Reads
droRho1
GCGCAACC--------GTCCAAGTAATCCAGATCG--AA-----------------------------------------------------------------TG--AGGGGGGAAA--------------------TCGGAGG--------A---------------------------GGGATCACTTGATTAATA--CACGCCCAAGGTTATGATT--TTAATGGGTTG------------C-T---------------TGGGATATGCTGGCTATGCGATGACGA--------GATGTTTTGTTTTT--CG--A-------T----------------CTC--TC------GC--------------------AATTCGCA---GCGT-----------------------CGCTTTTCCT--CGCACGTCAACACACCGACCAACACTAGTGCACGSizeHit CountTotal NormTotal
No Reads
droFic1
TC-GA----------------AGTAATCCCAATCG--AAATCGGGGGTTG-----------------------GAATGG------------------------------GCGGGGAAA--------------------TCGGCGG-A----GTG---------------------------CGGATCACTCGACTAATA--CACGCCCAAGGTTATGATTTTTTAATGGCTTGT------T---GCGTTGGGA-------------------------------TGACGACAATGTTGTGTGTGTTGTTTTCCCCG--A-------T----------------CTCTCTC------GC--------------------AAATTGGA---GCGT-----------------------CGCTTTTCCT--CGCACGTCAACACACCGACTAACACTTGTGCACGSizeHit CountTotal NormTotal
No Reads
droKik1
GC-CAGAAGCGTAGTGGCGATGGTAATCCCAATCA-AAAATCGGCT---ACGACGACACCTCTCCACTTGGGACGCGGGAGG-AG-G--GGCG-GACACGGTGCGGATGG-----G--------GGAGG--GGGCGACGCGGAAA--------G-----CGGAT---CGCGGTTCGCGGATAGGAACGCTCAATTAATACACACGCCCAAGGTTGCGATG---AGA------------------------------------------------------------------------TATGTTTTGTTTGG--CA--CTCT-CGCTCGCGCTTCTGAT----CTCGTTC------GCTGCTCTGGCGTCTC----------TGCG---GTGC----------------------GTTGTTTTCCT--CGCACAGAGGCG-ACCGACCAATACTACTGCACGSizeHit CountTotal NormTotal
No Reads
droAna3
TA-CAGAAAC--AGCCGTGTCCGTAATCCAAATCA--AAATCGGCT---ACGACGACA--GCTCCGCT----------------------------TGGGACGATGGGAG-----AAGGAGAGGTGAGG--GGGCG-----GG-C-G----TCG-C-----------------------AGAGGAACGCTCAATTAATA--CACGCCCAAGGTTGCTTT----TG-TT-----------------------------------------------------------------------GTTTGTTGTTTTCTCCG--C-------A----------------CTCTATCGTGC--TCAGCTCTCGGTTCTCGATTATAAACTGGCGCGACGC-----------------------TTGTTTTCCG--CG-----------ATCGACGACCGCT------CGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
TA-CAGAAAC--AGCCGTGTCCGTAATCCAAATCA--AAATCGGCT---ACGACGACA--GCTCCGCATGGGACGAGGGGA---GTG--TGC--GGTATGGTGAGGAGAG-----G--------TGAGG--GGGCG-----GG-C-G----TCG-C-----------------------AGAGGAACGCTCAATTAATA--CACGCCCAAGGTTGCTTT----TG-TT-----------------------------------------------------------------------GTTTGTTGTTTTCTCCG--C-------A----------------CTCTCTCGTGC--TCAGCTCTCGGTTCTCGATTATAAACTGGCGCGTCGT-----------------------TTGTTTTCCG--CG-----------ATCGACGACCGCT------CGSizeHit CountTotal NormTotal
No Reads
dp5
TC-GGTCA------------------CTTGGGGCG----------GGAGGT--------------------GGAGATGGTG---G------------------------A-----G-------------GA-GGAGGGGTAGAGGAG----ATGTCAGAAGAATTGCTGGGGCTAGCTGCTTGAAGCGAGTAATTAATA--CACGCCCAAGGTTATGAT-------------------------------------------------------------------------------GATGTTTTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................................TGTCAGAAGAATTGCTGGGGC.................................................................................................................................................................................................................................................................................................2111.0010100000000
..................................................................................................................................................G----ATGTCAGAAGAATTGCTGGG...................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................GTCAGAAGAATTGCTGGGGC.................................................................................................................................................................................................................................................................................................2011.0010100000000
droPer2
TC-GGTCA------------------CTTGGGGCG----------GGAGGT--------------------GGAGATGG------------------------------A-----G-------------GA-GGAGGGGTAGAGGAG----ATGTCAGAAGAATTGCTGGGGCTAGCTGCTTGAAGCGAGTAATTAATA--CACGCCCAAGGTTATGAT-------------------------------------------------------------------------------GATGTTTTGTTT--------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................................................................................TTGCTGGGGCTAGCTGCTTT.......................................................................................................................................................................................................................................................................................2011.001000010
.......A------------------CTTGGGGCG----------GGAGGT--------------------GG.....................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
droVir3
TT-TTGTTTC-----------CCTCTTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------CTGTCACAGTA--AATGCTCAAGGTTATCGT---------------------------------------------------------------------------------------------------------------------------------------------------------------------TA---GCGTTCTT-TCCGAGGAGGTGGAGACGTCGTTGTCGT--CCCACGGCA------CAACAAATACTAATGAATGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
No Reads
droMoj3
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAACAAATACTAATGAATGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads

Generated: 05/19/2015 at 02:19 AM