ID:

dsi_25237

 Coordinate:

3r:26197552-26197701 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-11.3 -11.3 -11.2

Flybase annnotation

five_prime_UTR [3r_26197463_26197860_-]; exon [3r_26197463_26197860_-]

No Repeatable elements found

Sense Strand Reads

##########################################################################################################################################################################################################################################################
AAATATGGCAGCAATGCATTATTATTAAAAGTATTGCATAAAATGCGCTTGCGTGTGGCCCCAAAAAGTGCGACTGTGTGCGTGTGTTTGTGTGCGACTGTGGCAACTACAACAAAAACAACGTCTGGGCTCTAAAACAAAGAAAATGAAAATTATTGTGGCAGAATCAATCCAATTAAAAAATTCGATTTCGATTTCAGTCGAATTAGAAGAAGGAAAAGCAGCGTCGCCAGCAGAGGAAGTGGGCAAA
***************************************************************...(((.((((..(((...(((....((.(((.......)))))....)))...)))..)).)).)))*********************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 O001
Testis
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M023
head
 M024
male body		 SRR902008
ovaries
.................................................................................................................AAAAACAACGTCTGGGCT....................................................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................AAAAGTGCGACTGTGTGCGTG...................................................................................................................................................................... 21 0 1 2.00 2 0 0 2 0 0 0 0 0 0 0 0
...............................................................................GCGTGTGTTTGTGTGCGACTG...................................................................................................................................................... 21 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1
....................................................................TGCGACTGTGTGCGTGTG.................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................GTGTGCGACTGTGGCAACT.............................................................................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
...................................GCATAAAATGCGGTTGCGT.................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
....................................................................................TGTTTGTGTGCGACTGTGGCA................................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CAGTCGAATTAGAAGAAGGA................................. 20 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
.....................................................TGTGGCCCCAAAAAGTGCGACTGTGT........................................................................................................................................................................... 26 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................CTACAACAAAAACAACGTCTG........................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................TTGTGTGCGACTGTGGCAACT.............................................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................................................................TCGCCAGCAGAGGAAGTGGGC... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
............................................................................................TGCGACTGTGGCAACTACAAC......................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
...........................................................................................................................................................................................................................AGCAGCGTCGCCAGCA............... 16 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.............................................................................................GCGACTGTGGCAACTACAACA........................................................................................................................................ 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................................AAAGCAGCGTCGCCAGCAGAGGAAGTGG..... 28 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.........................................................GCCCCAAAAAGTGCGACTGTGT........................................................................................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................TAGTAGAAGGAAAATCAGAGTCG..................... 23 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................................................................................................................TGGAATTACAAGAAGGAAAAGGA........................... 23 3 3 0.33 1 0 0 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................GTCTCCAGCAGAGGAA......... 16 1 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................AAGCAGCGTCGCCAGGAT.............. 18 2 10 0.10 1 1 0 0 0 0 0 0 0 0 0 0
.......................................................................................................................................................ATTATAGTGGCAGAACC.................................................................................. 17 2 11 0.09 1 0 0 0 0 1 0 0 0 0 0 0
..................................................................................TGTGTTTGTGTGCAACT....................................................................................................................................................... 17 1 15 0.07 1 0 0 0 1 0 0 0 0 0 0 0
..........................................................................TGTGTGCGTGTGTTTGTG.............................................................................................................................................................. 18 0 18 0.06 1 0 0 0 1 0 0 0 0 0 0 0
...............GCATTATTATTAAGA............................................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 0 0 0 1 0 0 0

Anti-sense strand reads

TTTATACCGTCGTTACGTAATAATAATTTTCATAACGTATTTTACGCGAACGCACACCGGGGTTTTTCACGCTGACACACGCACACAAACACACGCTGACACCGTTGATGTTGTTTTTGTTGCAGACCCGAGATTTTGTTTCTTTTACTTTTAATAACACCGTCTTAGTTAGGTTAATTTTTTAAGCTAAAGCTAAAGTCAGCTTAATCTTCTTCCTTTTCGTCGCAGCGGTCGTCTCCTTCACCCGTTT
***********************************************************************************************************************...(((.((((..(((...(((....((.(((.......)))))....)))...)))..)).)).)))*************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M023
head
......................................................................................................................GTTGCAGACCCGAGGTTTTGTT.............................................................................................................. 22 1 1 1.00 1 1 0 0
......................................................................................................CGGTGATGTTGTTTTT.................................................................................................................................... 16 1 20 0.05 1 0 1 0
...............................................................................................................................................................CCGTCTTAGTTTGGTCCAT........................................................................ 19 3 20 0.05 1 0 0 1
............................................................................................................................GACCCGAGATTTTCT............................................................................................................... 15 1 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3r:26197502-26197751 - dsi_25237 AAAT----------------------ATG-----------------------------GCAGCAATGCATTATTATT---AAAAGTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGACT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------A
droSec2 scaffold_4:5710657-5710906 - AAAT----------------------ATG-----------------------------GCAGCAATGCATTATTATT---AAAAGTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCTCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGACT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------A
dm3 chr3R:26886137-26886386 - AAAT----------------------ATG-----------------------------GCAGCAATGCAGTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGACT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------A
droEre2 scaffold_4820:1096037-1096286 + AAAT----------------------ATG-----------------------------TCAGCAATGCATTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGATT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGACGCCAGCAGAGGA--AGTGGGCAA--------------------A
droYak3 3R:27825610-27825858 - AAAT----------------------ATG-----------------------------TCAGCAATGCATTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAATAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGATT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAG-AAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------A
droEug1 scf7180000409166:149256-149514 + AAAT----------------------ATG-----------------------------GCAGCAATGCATTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTG--ATT-----------------------------------GTGT---GCGTGTGTG-----TTTGTGTG-CGCTA------TT---------------------------------G-GCAACTACAACAAAA-ACAAAAGTCTGGT----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGAAAA------------------CGCA------GCAGCGACGCCAGCAGAGGA--AGTGGGCAAAGCA--G-------------A
droBia1 scf7180000302113:433454-433701 + AAAT----------------------ATG-----------------------------TCAGCGATGCGTTATTGTT---GAAGTTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGAGT-----------------------------------GTGT---GTGT--GTG-----T--GTGTGCCGA-A------CT--------------------------------GG-CCAGCTACAACAAAA-ACAAAAGTCTGGG----CTGTAAAACAAAGAAAAT---GAAAATTA---------------CTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGCA-GA---------------------------GCAGCGACGCCAGCAGTGGA--AGTGGGCAA--------------------A
droTak1 scf7180000415236:227828-228071 - AAAT----------------------ATG-----------------------------CCCACAATGCGTTATTATT--AAAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGAGT-----------------------------------GTGT---GTGT--GTG-----TTTGTGTG-------------------------------------------------GC-GGTACAAAAACA-AAA--AGTCTGGGGGCTCTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGA---A---GCA---------------------GCCGAGTGGGAGAGAGA-GC--AGCGAGCAA--------------------A
droEle1 scf7180000491194:870830-871073 - AAAT----------------------ATG-----------------------------GCAGTAATGCTTTATTATT---CGTATTATGTTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGACT-----------------------------------GTGT---GCGTGTGTG-----T--TTGTG-TGATA------GG---------------------------------A-GCAAATACAACAAAAAACA--AGTCTGGG-----GCTAAAACAAAGAAAAT---GAA---TA---------------TTGACGA---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATAAGA---A--------------------AAAGT---A---------------------------GCAGAGACGCCAGCAGAGGA--AGTGGGCAA--------------------C
droRho1 scf7180000779488:906422-906664 - AAAT----------------------ACG-----------------------------GCAGTAATGCTTTATTATT-TGAATATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGACT-----------------------------------GTGTGGTGCGT--GTG-----TTTGTGT---GATA------GG---------------------------------A-GCAAGTACAACAAAA-ACAA--GTCTGGG-----GCTAAAACAAAGAAAAT---GAAAATT------------------G---CCAAAGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A---------------------AAG--AAA---------------------------GCAGCGACGCGAGCAGAGGA--AGTG-GCAA--------------------C
droFic1 scf7180000453782:414088-414322 + AAAT----------------------ATG-----------------------------GCAGTAAAGCATTATTTTT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGTTA-----------------------------------GTGT---G-----------------TGTG-TGATA------GT---------------------------------A-GCAAGTACAACAAAA-ACAAAAGTCGGG------TCTAAAACAAAGAAAAT---GAAAATTA---------------CTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAG---AA---------------------------GCAGCGACGCCAGCAGCGGA--AGTGGGCAA--------------------C
droKik1 scf7180000302238:101008-101332 - AAAG-----------TTTAAACT---A--------------------------------AAGCAATGCTTTATTT---------GTA--TTGCGTAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGAGTGAGTGTCTGCGGGTGTAAGTGTAACTTGTGTGGCTGCGTGT---GCGT--GTG-----TTCGTG--------------------------------------------------------TACAACAAAA-ACAA--GTCGTGG----GACTAAAACAAAGAAAATTCAGAAAATTCTACTGCCGTT----CTTGTGGA---ATAATCAAATCCAATTAAATGC------AAAAATTCGA---TTTCGATTCCAGT--CGAATTAGA---A--------------------AAAGCAGCAGCAGCAG------GCAAGGGAGACGAGGCAGCGACGCCAGCAGAGCAGCAGCG-GCAG----CAGCAGTGGTAAAGGAA
droAna3 scaffold_12911:4037936-4038278 + AAAT----------------------ATATCTTTTGTTGCGAATTTGTTAAGCATAATGTAAAAATGTATTATTTGTATTGGCAGTA--TTGCGTAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGAGTCT-----------------------------------GTGT---GTGT--GTGTTGTGTGTGTGTG-TGACT------GTGAGCCAAGTGGGATGGTGTTGGTGTAG-ATGGGG-CCTAATACAACAAAA-ACAA--GTCTTGG------CTAAAACAAAGAAAATT--GAAAATTC-GCCGCCGTTTTTCCTTGCGTT---GCGTTCA-ATCCAATTAAA-----------CGATTCGCATGTCTCGATTTCAGTCTCGAATTGAA---AGGCAAGAAGGGTAAAGTGAAGT-----GAGCAGCA-------------------------------GAGCAG------AGTAG----AGCA--G-------------C
droBip1 scf7180000396640:885678-886047 + AAAC-------------TAAACAAAAATATCTTTTGTTCCGAAATTGTTAAGCATAATGCAAAAATGTATTATTCTTATTGCCAGTA--TTGCGTAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGAGTCT-----------------------------------GTGT---GTGT--GAG-----T--GTGTG---CTT------GTGAGCCCAGTGGGATGGTGTTGGTGTAG-ATGGGG-CCTAATACAACAAAA-ACAA--GTCTTGG------CTAAAACAAAGAAAATT--GAAAATTC-GCCGCCGTTTTTCCTTGC--------GTTCA-ATCCAATTAAA-----------CGATTCGCACGTCTCGATTTCAGT--CGAATTGAA---AGGCAAGAAGGGTAAAGTGAAGT-----GAG-AGCAGAGCAGTGCAGCGCA----GCGCAGCGACGCCAGCAGAGCCGCAGCA-GCGA----CGCC------------A
dp5 2:259717-260048 + ATATGATTTTAATGGC-------------------------------TTTAACA-AATGAAGAAATGTATTATAATTGTTAATACCA--TTGCGTAAATATGTTGCGCTTGCGTGTGGCCCAAAA-AATGTGAGT-----------------------------------GTGT---TTGT--GTG-----CCTGTGCA-TGAGTGTGCCTCT---------GCGGTTG---AGGTGAAGCGCGGGGCGCCAGT---CCAAAA-ACAA--GTCTTG------TGTAAAAAAAAAACAAA---GAAAACT------------------GT-------GAATCA-ATCCAATTAAACGATTTGAAAAAAATTCTA------TGTTTTCAGT--CGAATTGAGCGAAAGTAAGGAAG--AAAGAGAAGAAG---AA---GCAGTG-AGTGCAGCACA-------CACGAACGCCAGCAGAGGA--GGCAGCAGC--------------------A

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AAAT----------------------ATG-----------------------------GCAGCAATGCATTATTATT---AAAAGTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGACT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------ASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................AAAA-ACAA-CGTCTGGG----CT.....................................................................................................................................................................................................................................1812.00200200000000000000
...........................................................................................................................AAAAGTGCGACT-----------------------------------GTGT---GCGT--G........................................................................................................................................................................................................................................................................................................................................2112.00200000000200000000
.................................................................................................................................................................................GCGT--GTG-----TTTGTGTG-CGACT------G............................................................................................................................................................................................................................................................................................................2112.00200000000000011000
................................................................................................................................TGCGACT-----------------------------------GTGT---GCGT--GTG-----.................................................................................................................................................................................................................................................................................................................................1811.00100001000000000000
..................................................................................................................................................................................................GTGTG-CGACT------GT---------------------------------G-GCAACT..................................................................................................................................................................................................................................................................1911.00100100000000000000
........................................................................................................................................................................................TG-----TTTGTGTG-CGACT------GT---------------------------------G-GCA.....................................................................................................................................................................................................................................................................2111.00100000000010000000
.................................................................................................................................................................................................................................................................................................................................................................................................CAGT--CGAATTAGA---A--------------------GAAGGA..................................................................................2011.00100000000000001000
.................................................................................................................TGTGGCCCCAAAAAGTGCGACT-----------------------------------GTGT---...............................................................................................................................................................................................................................................................................................................................................2611.00110000000000000000
............................................................................................................................................................................................................................................................CTACAACAAAA-ACAA-CGTCTG.............................................................................................................................................................................................................................................2111.00100000001000000000
................................................................................................................................................................................................TTGTGTG-CGACT------GT---------------------------------G-GCAACT..................................................................................................................................................................................................................................................................2111.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCCAGCAGAGGA--AGTGGGC.......................2111.00100000000001000000
.....................................................................................................................................................................................................TG-CGACT------GT---------------------------------G-GCAACTACAAC.............................................................................................................................................................................................................................................................2111.00100000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................A---------------------------GCAGCGTCGCCAGCA.....................................1611.00100000010000000000
......................................................................................................................................................................................................G-CGACT------GT---------------------------------G-GCAACTACAACA............................................................................................................................................................................................................................................................2111.00100001000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................AAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGG.........................2811.00100000001000000000
.....................................................................................................................GCCCCAAAAAGTGCGACT-----------------------------------GTGT---...............................................................................................................................................................................................................................................................................................................................................2211.00100000000000001000
......................................................................................................................................T-----------------------------------GTGT---GCGT--GTG-----TTTGTG...........................................................................................................................................................................................................................................................................................................................18180.06100000000001000000
droSec2
AAAT----------------------ATG-----------------------------GCAGCAATGCATTATTATT---AAAAGTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCTCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGACT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------ASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGTCGCCAGCAGAGGA--AGTGGGCA......................2611.0010010
..........................................................................................................................................................................................................................................................................................................................................................................................................ATTAGA---A--------------------GAAGGAAAA---------------------------GCAGC...............................................2111.0010010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAGCAGAGGA--AGTGGGC.......................2211.0010100
................................................................................................................................................................................................................................................................................................................AAATTA---------------TTGTGGC---AGAATCA-A........................................................................................................................................................................2111.0010001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCAGAGGA--AGTGGGC.......................1911.0010010
............................................................................................................................................................................................................................................................................................................................................................................................GATTTCAGT--CGAATTAGA---A--------------------GAAG....................................................................................2311.0010010
.............................................................................................................................................................................................................................................................................................................................................................................................................AGA---A--------------------GAAGGAAAA---------------------------GCAGCGTCGCCAG.......................................2611.0010100
dm3
AAAT----------------------ATG-----------------------------GCAGCAATGCAGTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGACT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------ASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
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...................................................................................................................................................................................................................................................................................................AAGAAAAT---GAAAATTA---------------TTGTGG.....................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAGCAGAGGA--AGT...........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.................................................................................................................................................................................................................................................................................TGGG----CTCTAAAACAAAGAAA.......................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................GATTTCAGT--CGAATTAGA---A--------------------GA......................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................A-CGTCTGGG----CTCTAAAACAAAGAAAAT---G.................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GT---------------------------------G-GCAACTACAACAAAA-ACA.....................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................CTTGCGTGTGGCCCCAAAAA.................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTCGCCAGCAGAGGA--AGTGGGCA......................2511.0010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................T---GCGT--GTG-----TTTGTGTG-CG......................................................................................................................................................................................................................................................................................................................1840.7530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................GCGACT-----------------------------------GTGT---GCGT--GTG-----TTT..............................................................................................................................................................................................................................................................................................................................2020.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................GT---GCGT--GTG-----TTTGTGTG-C.......................................................................................................................................................................................................................................................................................................................1860.5030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000010000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................................................GTGCGACT-----------------------------------GTGT---GCGT--GTG-----.................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000
...............................................................................................................................GTGCGACT-----------------------------------GTGT---GCGT--GTG-----TT...............................................................................................................................................................................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------------------------GCAGCGTCGCCAGCAGTT..................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................TGCGACT-----------------------------------GTGT---GCGT--GTG-----.................................................................................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
droEre2
AAAT----------------------ATG-----------------------------TCAGCAATGCATTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGATT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGGAAAA---------------------------GCAGCGACGCCAGCAGAGGA--AGTGGGCAA--------------------ASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGACGCCAGCAGAGGA--AGTG..........................2211.0010000100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGACGCCAGCAGAGGA--AG............................1911.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGCCAGCAGAGGA--AGTG..........................1811.0010000010
droYak3
AAAT----------------------ATG-----------------------------TCAGCAATGCATTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAATAGTGCGACT-----------------------------------GTGT---GCGT--GTG-----TTTGTGTG-CGATT------GT---------------------------------G-GCAACTACAACAAAA-ACAA-CGTCTGGG----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAG-AAAA---------------------------GCAGCGTCGCCAGCAGAGGA--AGTGGGCAA--------------------ASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCAGCAGAGGA--AGTGGGCAA--------------------.2411.00100000100000
.........................................................................................................................................................................................G-----TTTGTGTG-CGATT------GT---------------------------------G-GC......................................................................................................................................................................................................................................................................1911.00100000010000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGAGGA--AGTGGGCAA--------------------A1811.00100100000000
droEug1
AAAT----------------------ATG-----------------------------GCAGCAATGCATTATTATT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTG--ATT-----------------------------------GTGT---GCGTGTGTG-----TTTGTGTG-CGCTA------TT---------------------------------G-GCAACTACAACAAAA-ACAAAAGTCTGGT----CTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGAAAA------------------CGCA------GCAGCGACGCCAGCAGAGGA--AGTGGGCAAAGCA--G-------------ASizeHit CountTotal NormTotal
No Reads
droBia1
AAAT----------------------ATG-----------------------------TCAGCGATGCGTTATTGTT---GAAGTTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGAGT-----------------------------------GTGT---GTGT--GTG-----T--GTGTGCCGA-A------CT--------------------------------GG-CCAGCTACAACAAAA-ACAAAAGTCTGGG----CTGTAAAACAAAGAAAAT---GAAAATTA---------------CTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGCA-GA---------------------------GCAGCGACGCCAGCAGTGGA--AGTGGGCAA--------------------ASizeHit CountTotal NormTotal
No Reads
droTak1
AAAT----------------------ATG-----------------------------CCCACAATGCGTTATTATT--AAAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAAAAGTGCGAGT-----------------------------------GTGT---GTGT--GTG-----TTTGTGTG-------------------------------------------------GC-GGTACAAAAACA-AAA--AGTCTGGGGGCTCTCTAAAACAAAGAAAAT---GAAAATTA---------------TTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAGA---A---GCA---------------------GCCGAGTGGGAGAGAGA-GC--AGCGAGCAA--------------------ASizeHit CountTotal NormTotal
No Reads
droEle1
AAAT----------------------ATG-----------------------------GCAGTAATGCTTTATTATT---CGTATTATGTTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGACT-----------------------------------GTGT---GCGTGTGTG-----T--TTGTG-TGATA------GG---------------------------------A-GCAAATACAACAAAAAACA--AGTCTGGG-----GCTAAAACAAAGAAAAT---GAA---TA---------------TTGACGA---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATAAGA---A--------------------AAAGT---A---------------------------GCAGAGACGCCAGCAGAGGA--AGTGGGCAA--------------------CSizeHit CountTotal NormTotal
No Reads
droRho1
AAAT----------------------ACG-----------------------------GCAGTAATGCTTTATTATT-TGAATATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGACT-----------------------------------GTGTGGTGCGT--GTG-----TTTGTGT---GATA------GG---------------------------------A-GCAAGTACAACAAAA-ACAA--GTCTGGG-----GCTAAAACAAAGAAAAT---GAAAATT------------------G---CCAAAGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A---------------------AAG--AAA---------------------------GCAGCGACGCGAGCAGAGGA--AGTG-GCAA--------------------CSizeHit CountTotal NormTotal
No Reads
droFic1
AAAT----------------------ATG-----------------------------GCAGTAAAGCATTATTTTT---AAAATTA--TTGCATAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGCGTTA-----------------------------------GTGT---G-----------------TGTG-TGATA------GT---------------------------------A-GCAAGTACAACAAAA-ACAAAAGTCGGG------TCTAAAACAAAGAAAAT---GAAAATTA---------------CTGTGGC---AGAATCA-ATCCAATTAAA-----------AAATTCGA---TTTCGATTTCAGT--CGAATTAGA---A--------------------GAAG---AA---------------------------GCAGCGACGCCAGCAGCGGA--AGTGGGCAA--------------------CSizeHit CountTotal NormTotal
No Reads
droKik1
AAAG-----------TTTAAACT---A--------------------------------AAGCAATGCTTTATTT---------GTA--TTGCGTAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGAGTGAGTGTCTGCGGGTGTAAGTGTAACTTGTGTGGCTGCGTGT---GCGT--GTG-----TTCGTG--------------------------------------------------------TACAACAAAA-ACAA--GTCGTGG----GACTAAAACAAAGAAAATTCAGAAAATTCTACTGCCGTT----CTTGTGGA---ATAATCAAATCCAATTAAATGC------AAAAATTCGA---TTTCGATTCCAGT--CGAATTAGA---A--------------------AAAGCAGCAGCAGCAG------GCAAGGGAGACGAGGCAGCGACGCCAGCAGAGCAGCAGCG-GCAG----CAGCAGTGGTAAAGGAASizeHit CountTotal NormTotal
No Reads
droAna3
AAAT----------------------ATATCTTTTGTTGCGAATTTGTTAAGCATAATGTAAAAATGTATTATTTGTATTGGCAGTA--TTGCGTAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGAGTCT-----------------------------------GTGT---GTGT--GTGTTGTGTGTGTGTG-TGACT------GTGAGCCAAGTGGGATGGTGTTGGTGTAG-ATGGGG-CCTAATACAACAAAA-ACAA--GTCTTGG------CTAAAACAAAGAAAATT--GAAAATTC-GCCGCCGTTTTTCCTTGCGTT---GCGTTCA-ATCCAATTAAA-----------CGATTCGCATGTCTCGATTTCAGTCTCGAATTGAA---AGGCAAGAAGGGTAAAGTGAAGT-----GAGCAGCA-------------------------------GAGCAG------AGTAG----AGCA--G-------------CSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................AAA-ACAA--GTCTTGG------CTAAAAC..............................................................................................................................................................................................................................2112.002011000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGAATTGAA---AGGCAAGAAG...................................................................................................2011.001000010
..........................................................................................................................................................................................................ACT------GTGAGCCAAGTGGGATGG...........................................................................................................................................................................................................................................................................................2111.001001000
........................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGGGTAAAGTGAAGT-----GAGCAGCA-------------------------------G.........................................2711.001100000
................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTGAAGT-----GAGCAGCA-------------------------------GAGCA.....................................2311.001000010
...........................................................................................................................AA-AGTGAGTCT-----------------------------------GTGT---GTGT--G........................................................................................................................................................................................................................................................................................................................................2011.001010000
.........................................................................................................................................................................................................GACT------GTGAGCCAAGTGGGATG............................................................................................................................................................................................................................................................................................2111.001000001
...............................................................................................................................................................................................................................................................CAACAAAA-ACAA--GTCTTGG------CT...................................................................................................................................................................................................................................2111.001010000
...............................................................................TGGCAGTA--TTGCGTAAA----ATGC......................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................................................................................................................................................................................GACT------GTGAGCCAAGTGGGATGGTGT........................................................................................................................................................................................................................................................................................2511.001000010
........................................................................................................................................................................................................................CCAAGTGGGATGGTGTTGGTGA..................................................................................................................................................................................................................................................................................2211.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGT-----GAGCAGCA-------------------------------GAGCAG------AGTAG----AGC..................2711.001000010
..............................................................................................TAAA----ATGCGCTTGCGTGTGGCC........................................................................................................................................................................................................................................................................................................................................................................................................2211.001010000
...........................................................................................................................AA-AGTGAGTCT-----------------------------------GTGT---GTGT--GT.......................................................................................................................................................................................................................................................................................................................................2111.001010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTAAAGTGAAGT-----GAGCAG...........................................................................2111.001100000
..................................................................................................................................................................................TGT--GTGTTGTGTGTGTGTG-TG......................................................................................................................................................................................................................................................................................................................21190.051000001
..........................................................................................................................................................................GTGT---GTGT--GTGTTGTGTGTG.............................................................................................................................................................................................................................................................................................................................20200.051000001
droBip1
AAAC-------------TAAACAAAAATATCTTTTGTTCCGAAATTGTTAAGCATAATGCAAAAATGTATTATTCTTATTGCCAGTA--TTGCGTAAA----ATGCGCTTGCGTGTGGCCCCAAA-AGTGAGTCT-----------------------------------GTGT---GTGT--GAG-----T--GTGTG---CTT------GTGAGCCCAGTGGGATGGTGTTGGTGTAG-ATGGGG-CCTAATACAACAAAA-ACAA--GTCTTGG------CTAAAACAAAGAAAATT--GAAAATTC-GCCGCCGTTTTTCCTTGC--------GTTCA-ATCCAATTAAA-----------CGATTCGCACGTCTCGATTTCAGT--CGAATTGAA---AGGCAAGAAGGGTAAAGTGAAGT-----GAG-AGCAGAGCAGTGCAGCGCA----GCGCAGCGACGCCAGCAGAGCCGCAGCA-GCGA----CGCC------------ASizeHit CountTotal NormTotal
No Reads
dp5
ATATGATTTTAATGGC-------------------------------TTTAACA-AATGAAGAAATGTATTATAATTGTTAATACCA--TTGCGTAAATATGTTGCGCTTGCGTGTGGCCCAAAA-AATGTGAGT-----------------------------------GTGT---TTGT--GTG-----CCTGTGCA-TGAGTGTGCCTCT---------GCGGTTG---AGGTGAAGCGCGGGGCGCCAGT---CCAAAA-ACAA--GTCTTG------TGTAAAAAAAAAACAAA---GAAAACT------------------GT-------GAATCA-ATCCAATTAAACGATTTGAAAAAAATTCTA------TGTTTTCAGT--CGAATTGAGCGAAAGTAAGGAAG--AAAGAGAAGAAG---AA---GCAGTG-AGTGCAGCACA-------CACGAACGCCAGCAGAGGA--GGCAGCAGC--------------------ASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGAACGCCAGCAGAGGA--GG............................2112.0020000000020
.....................................................................................................GTTGCGCTTGCGTGTGGC.........................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTGCAGCACA-------CACGAACGCC.........................................2111.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGAAG---AA---GCAGTG-AGT..................................................................1911.0010100000000
....................................................................................................................................................................................................................................................................................................................................................................................................T--CGAATTGAGCGAAAGTAAGG.....................................................................................................2111.0010100000000
...................................................................................................ATGTTGCGCTTGCGTGTGGCCCA......................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
..................................................................................................................................................................................................GTGCA-TGAGTGTGCCTCT---------GCGGTTG---........................................................................................................................................................................................................................................................................................2511.0010000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA-------CACGAACGCCAGCAGAGGA--..............................2111.0010000000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGAAG--AAAGAGAAGAAG---.................................................................................2111.0010000001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------CACGAACGCCAGCAGAGGA--GGC...........................2311.0010000000001
.............................................................................................................................................................................................................................................AAGCGCGGGGCGCCAGT---CCA............................................................................................................................................................................................................................................................2011.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................AATTGAGCGAAAGTAAGGAAG--................................................................................................2111.0010100000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................GTAAGGAAG--AAAGAGAAGAAG---AA---GC..........................................................................2511.0010010000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAG---AA---GCAGTG-AGTGCA...............................................................1911.0010000001000

Generated: 05/18/2015 at 10:04 PM