ID:

dsi_25229

Coordinate:

3r:10486192-10486244 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3r_10486011_10486191_+]; CDS [3r_10486011_10486191_+]; CDS [3r_10486245_10487626_+]; exon [3r_10486245_10487626_+]; intron [3r_10486192_10486244_+]

No Repeatable elements found

Sense Strand Reads

##################################################-----------------------------------------------------################################################## ACGAACGCGAGAATTCAATTCTCTCGGTAATCGAGGACACGAAAAAGAATGTGGGTAAGGTACCAGATAGCCAAAACATTGTTGACTTCTCCGATACTCGCAGATCAAAGACTCTGCGAACAAGCAGAGGTGGGCCAGTATGAACAAAGTATG ************************************************(((((((.((....(((.((.(((.......))).)))))))..)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries
........................CGGTAATCGAGGACACGAAAAAGAAT.......................................................................................................	26	0	1	1.00	1	1	0	0	0
...................TCTCTCGGTAATCAAGGC....................................................................................................................	18	2	2	0.50	1	0	1	0	0
...............................................AATGTGGGTAAGGGA...........................................................................................	15	1	13	0.23	3	0	0	1	2
................................................ATGTAGGTAAGGGACC.........................................................................................	16	2	20	0.20	4	2	0	2	0
...........................................................GTACCAGATTACCAAAGCAT..........................................................................	20	3	7	0.14	1	0	0	1	0
...............................................................................TGTTGACTTCTCCGAA..........................................................	16	1	20	0.05	1	0	0	1	0

Anti-sense strand reads

TGCTTGCGCTCTTAAGTTAAGAGAGCCATTAGCTCCTGTGCTTTTTCTTACACCCATTCCATGGTCTATCGGTTTTGTAACAACTGAAGAGGCTATGAGCGTCTAGTTTCTGAGACGCTTGTTCGTCTCCACCCGGTCATACTTGTTTCATAC ************************************************(((((((.((....(((.((.(((.......))).)))))))..)))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	M023 head	M025 embryo	SRR553487 NRT_0-2 hours eggs	M053 female body	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries
.........................CCTTTAGGTCATGTGCTTTTT...........................................................................................................	21	3	4	40.25	161	85	70	4	0	2	0	0
.........................CCTTTAGGTCATGTGCTTTT............................................................................................................	20	3	11	9.73	107	53	47	2	0	4	1	0
............................TTAGGTCATGTGCTTTTT...........................................................................................................	18	2	9	1.44	13	5	7	0	0	1	0	0
.........................CCTTTAGGTCATGTGCTTTTTC..........................................................................................................	22	3	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................AGCTATGAGCGACTAGTTTTTGA........................................	23	3	1	1.00	1	0	0	0	1	0	0	0
.........................CCTTTAGGTCCTGTGCTTTT............................................................................................................	20	2	2	0.50	1	0	1	0	0	0	0	0
..........................CTTTAGGTCATGTGCTTTTT...........................................................................................................	20	3	15	0.47	7	6	0	1	0	0	0	0
.........................CCCTTAGGTCATGTGCTTTTT...........................................................................................................	21	3	3	0.33	1	1	0	0	0	0	0	0
........................GCCTTTAGGTCATGTGCTTTT............................................................................................................	21	3	3	0.33	1	0	1	0	0	0	0	0
.......................................................................................AGAGGCCATAAGCGTC..................................................	16	2	20	0.05	1	0	0	0	0	0	0	1

Generated: 04/24/2015 at 10:42 AM