ID:

dsi_25221

 Coordinate:

2r:4844216-4844278 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

exon [2r_4844004_4844215_-]; CDS [2r_4844004_4844215_-]; CDS [2r_4844279_4844474_-]; exon [2r_4844279_4844474_-]; intron [2r_4844216_4844278_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------##################################################
CAACCACTTGAGCAACACTCATGGTATGCCTTTGGGCAAGGATGAAAAAGGTACATCAAGGCTATCCCTAAATGTTAATGAACAACCCATTTAAAGATTGTACTGATTTTCAGATGGAGATCAGGCAGCTGTGGCAACGCAAACCTCGCGGCCTACCTCGCCC
**************************************************....((((..((.(((..((((((.............))))))..))).))..))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total M025
embryo
 GSM343915
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 M053
female body
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
........................................................................................................................TCAGGCAGCTGTGGCAACGCAAACC.................. 25 0 1 2.00 2 2 0 0 0 0 0 0 0 0
.............................................................................................................AAAGATGGAGATCAGGCAGC.................................. 20 2 1 1.00 1 0 1 0 0 0 0 0 0 0
..............................................................................................................AAGATGGAGATCAGGCAGCTGTGGCCA.......................... 27 2 1 1.00 1 0 0 0 0 0 0 1 0 0
.................................................................................................................ATGGAGATCAGGCAGCTGTGGCAAC......................... 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
..............................................................................................................AAGATGGAGATCAGGCAGCTGTGGCA........................... 26 1 1 1.00 1 0 1 0 0 0 0 0 0 0
.............AACACTCATGGTATGCCTTTGGGCAAGGT......................................................................................................................... 29 1 1 1.00 1 0 0 0 0 0 1 0 0 0
..............................................................................................................................AGCTGTGGCAACGCAAACCTCGC.............. 23 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................ATGGTATGCCTTTGGGCAAGGATG....................................................................................................................... 24 0 1 1.00 1 0 1 0 0 0 0 0 0 0
............................................................................................................AAAAGATGGAGATCAGGCAGCTGT............................... 24 3 1 1.00 1 1 0 0 0 0 0 0 0 0
...................................................................................................................GGTGATCAGGCAGCTGTGGCA........................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................AGATGGAGATCAGGCAGCTGT............................... 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................ATCAGGCAGCTGTGGCAACGCAAACC.................. 26 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................ATGGAGATCAGGCAGCTGTGGCAACGC....................... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0
......................GGTAGGCCTTTGGGCGAG........................................................................................................................... 18 2 3 0.33 1 0 0 0 1 0 0 0 0 0
.......................................................TAAAGGCTATCCCTAAGGG......................................................................................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0 0
...................CATTGTATGATTTTGGGCAA............................................................................................................................ 20 3 19 0.05 1 0 0 0 0 0 0 0 1 0
........................................................................................ATTTAAAGATTGAACAG.......................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

GTTGGTGAACTCGTTGTGAGTACCATACGGAAACCCGTTCCTACTTTTTCCATGTAGTTCCGATAGGGATTTACAATTACTTGTTGGGTAAATTTCTAACATGACTAAAAGTCTACCTCTAGTCCGTCGACACCGTTGCGTTTGGAGCGCCGGATGGAGCGGG
**************************************************....((((..((.(((..((((((.............))))))..))).))..))))......************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
....................................................................................TGGGTAAATTTCAAAC............................................................... 16 1 13 2.92 38 27 1 4 4 2
..........................................................................................................................................CGTTTTGAGCTCAGGATGGA..... 20 3 1 1.00 1 0 1 0 0 0
....................................................................................TGGGTAAATTTCAAA................................................................ 15 1 20 0.35 7 2 0 0 1 4
.....................................................................................GGGTAAATTTCAAAC............................................................... 15 1 20 0.30 6 0 1 5 0 0
..TGGTCAACTCGATGTGAGGA............................................................................................................................................. 20 3 6 0.17 1 0 1 0 0 0
................................................................................TGGTTGGGTAAATTTC................................................................... 16 1 7 0.14 1 0 0 0 0 1
.........................................................................................................................................GCGTTTGCAGCGCCG........... 15 1 10 0.10 1 0 0 0 1 0
...GGTTAACTCGATGTGAGGA............................................................................................................................................. 19 3 20 0.10 2 0 2 0 0 0
..............................................................ATAGGGTTATACAGTTACTT................................................................................. 20 3 11 0.09 1 0 0 0 1 0

Generated: 04/23/2015 at 07:21 AM