ID:

dsi_25195

 Coordinate:

3r:4440074-4440301 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-21.8 -21.7 -21.6

Flybase annnotation

exon [3r_4438497_4440073_+]; CDS [3r_4438497_4440073_+]; CDS [3r_4440302_4440574_+]; exon [3r_4440302_4440574_+]; intron [3r_4440074_4440301_+]

No Repeatable elements found

Sense Strand Reads

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CGGAGTTCAAAGTTCTGAAACAGTGTCGCAAGGAGCTGCGCATGCTGAAGGTATCCATTTTACTTGTAGAATTTCACAAATATGGATTTATTTCTTTATATCTACCACTTTATCTGTGCATGTTTAATAAACTACTATACTAAATTTATGCATGCCACATGTGGAACTTTGAGCTTTTCTTTTTTCCCCCGCAAGTGATTTACTAACCCTAATCGTAATGAATACCCTAATCCGTACTAATCCCCCGATTGTTCCAATAACTCTTTAAACTCTCCCAGCAACTCTGGGACTACGTCAATATCGTGGCCACCAGCATCGACGATTGGAA
*****************************************************************...............((((((((...(((.((((..................((((((.(((..................))).))))))(((.(((((......(((.....))).......))))).))).................)))).)))......)))))))).............******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M025
embryo
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 M024
male body		 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
.........................................................................................................................................................GCCAATTGTGGAACTTTGAGC.......................................................................................................................................................... 21 2 1 2.00 2 0 2 0 0 0 0 0 0
..................................................................................................................................................................................................................................CTGATCGGTACTAATCGCCCG................................................................................. 21 3 2 1.50 3 3 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................ACCGGTACTAATCGCCCG................................................................................. 18 3 20 1.25 25 25 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TACTAATCCCCCGAT............................................................................... 15 0 1 1.00 1 1 0 0 0 0 0 0 0
.................................................................GTAGAATTTCACAAATATGGA.................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0
.................AAACAGTGTCGCAAAGA...................................................................................................................................................................................................................................................................................................... 17 1 2 0.50 1 0 0 1 0 0 0 0 0
........................................................................................................................................................................................................................................CGTACTAATCGCCCG................................................................................. 15 1 5 0.40 2 2 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................................................ATCTTGGCAACCAGCATCG.......... 19 2 3 0.33 1 0 0 1 0 0 0 0 0
.....................................................................................................................................................................................................................................ATCGGTACTAATCGCCCG................................................................................. 18 2 3 0.33 1 1 0 0 0 0 0 0 0
......................GTGTCGCAAGGATCTGCACT.............................................................................................................................................................................................................................................................................................. 20 3 8 0.25 2 0 0 2 0 0 0 0 0
............................................................................................TCTTTAGATCTATCACTCTATC...................................................................................................................................................................................................................... 22 3 4 0.25 1 0 0 0 1 0 0 0 0
........................................................................................................................................................AGCCAAATGTGGAACTTT.............................................................................................................................................................. 18 2 14 0.21 3 0 1 0 0 1 1 0 0
.........................................................................................................................................................GCCAATTGTGGAACTTTGACC.......................................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 1 0 0 0
.................................................................................................................................................................TGGAACTTCGAACTTTTTTTTT................................................................................................................................................. 22 3 7 0.14 1 0 0 0 0 0 0 1 0
.........................................................................................................................................................GCCAATTGTGGAACTTTG............................................................................................................................................................. 18 2 16 0.13 2 0 0 0 0 0 2 0 0
......................................GGCATGCTGGAGGTATC................................................................................................................................................................................................................................................................................. 17 2 16 0.06 1 0 0 1 0 0 0 0 0
...........................................................TTACTGGTAGAATTT.............................................................................................................................................................................................................................................................. 15 1 19 0.05 1 1 0 0 0 0 0 0 0
.......................................GCTTGCTGGAGGTATC................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................AAATTTGAGCTTTTC..................................................................................................................................................... 15 1 20 0.05 1 0 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................................CTCAATTGATCCAATAACT.................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 0 1

Anti-sense strand reads

GCCTCAAGTTTCAAGACTTTGTCACAGCGTTCCTCGACGCGTACGACTTCCATAGGTAAAATGAACATCTTAAAGTGTTTATACCTAAATAAAGAAATATAGATGGTGAAATAGACACGTACAAATTATTTGATGATATGATTTAAATACGTACGGTGTACACCTTGAAACTCGAAAAGAAAAAAGGGGGCGTTCACTAAATGATTGGGATTAGCATTACTTATGGGATTAGGCATGATTAGGGGGCTAACAAGGTTATTGAGAAATTTGAGAGGGTCGTTGAGACCCTGATGCAGTTATAGCACCGGTGGTCGTAGCTGCTAACCTT
*******************************************************************************...............((((((((...(((.((((..................((((((.(((..................))).))))))(((.(((((......(((.....))).......))))).))).................)))).)))......)))))))).............***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M024
male body		 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 GSM343915
embryo
......................................................................................................................................................................................................AAATGATTGGGATTA................................................................................................................... 15 0 1 1.00 1 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................................................................................................GGTGGTCGTAGCTGTTAATC.. 20 2 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................ATGAATTAAATACGCACGGT........................................................................................................................................................................... 20 2 2 0.50 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................AGCATTACTAGTGGGGTTA................................................................................................. 19 3 13 0.38 5 0 0 0 5 0 0 0
.........................................................................................................................................ATGAATTAAATACGCACGGTC.......................................................................................................................................................................... 21 3 4 0.25 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................AAAATGATTGGGATTA................................................................................................................... 16 1 6 0.17 1 0 0 1 0 0 0 0
..........................................................................................................................................................................ATCGAAGAGAAAAAAGGGCGC......................................................................................................................................... 21 3 6 0.17 1 0 0 0 0 0 1 0
..........................................................................................................................................................GGTGAAAACCTTGAAACTCC.......................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AATGATTGGGATTAA.................................................................................................................. 15 1 13 0.08 1 0 0 0 0 1 0 0
....CAAGATTCAGGACTTTG................................................................................................................................................................................................................................................................................................................... 17 2 15 0.07 1 0 0 0 0 1 0 0
.......................................................................................................................................................................................................AATGATTGGGGTTAAGATTA............................................................................................................. 20 3 18 0.06 1 0 0 0 0 0 0 1

Generated: 04/24/2015 at 07:31 AM