ID:

dsi_25192

 Coordinate:

3r:17708716-17708870 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-19.1 -18.7 -18.7

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCACACTGGGGCTTATGATTAAAAAAAACTGAACTGACTCCAATAAAAACGTGAGGTAGAAAAAGCGAATTAAGTTGACAATTAATACACACAGCAGCCGCACGGTAACCAGCCGCCAATACCGATACGAACGCGCGGCGGCAACAGCAATTGCACACATAAAAGCCCACATCAAACGCAAGCTGCCCGCAACCGCGGGCACTTAAATTCCGAAATGCGTCCACGTAGTGCAAAATCCGAATCTCAATTCGAATT
*****************************************************************************************....((.(((((.((...........................)).))))).))..((((..((((.......................))))))))********************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 M024
male body		 M053
female body
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR902008
ovaries
 SRR902009
testis
 O001
Testis
 O002
Head
 SRR553486
Makindu_3 day-old ovaries
 GSM343915
embryo
 SRR553487
NRT_0-2 hours eggs
.........................................................................................CACAGCAGCCGCACGGTAACCAGCCG............................................................................................................................................ 26 0 1 2.00 2 0 2 0 0 0 0 0 0 0 0 0 0
...............................................AACGTGAGGTAGAAAAAGCG............................................................................................................................................................................................ 20 0 1 2.00 2 0 0 1 0 0 1 0 0 0 0 0 0
...........................ACTGAACTGACTCCAATAAAAA.............................................................................................................................................................................................................. 22 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
................................................ACGTGAGGTAGAAAAAGC............................................................................................................................................................................................. 18 0 1 2.00 2 0 1 0 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................CCCACATCAAACGCAAGCTG...................................................................... 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................GACTCCAATAAAAACGTG.......................................................................................................................................................................................................... 18 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................TTCCGAAATGCGTCCACG.............................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
....................................................................................ATACACACAGCAGCCGCACG....................................................................................................................................................... 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
................................................TCGTGAGGTAGAAAAAGCGT........................................................................................................................................................................................... 20 2 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
................GATTAAAAAAAACTGAACTGACT........................................................................................................................................................................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................AGTTGCACACATAAAAGCCCA...................................................................................... 21 1 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
...............................................AACGTGAGGTAGAAAAAG.............................................................................................................................................................................................. 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..................TTAAAAAAAACTGAACTGACTCCA..................................................................................................................................................................................................................... 24 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................AACAGCAATTGCACACATAA............................................................................................. 20 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0 0
.........................................................................................................................................................................................................CTTGGATTCCGAAATGCGTCC................................. 21 2 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................CACGTAGTGCAAAATCCG................ 18 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...............TGATTAAAAAAAACTGAACTGACTCCAA.................................................................................................................................................................................................................... 28 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..................TTAAAAAAAACTGAACTGACTCC...................................................................................................................................................................................................................... 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................AACCAGCCGCCAATACCGAT................................................................................................................................. 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..........................................................GAAAAAGCGAATTAAGTTGAC................................................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................................GGTAGAAAAAGCGAATT........................................................................................................................................................................................ 17 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
....................AAAAAAAACTGAACTGACTC....................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
...............................................AACGTGAGGTAGAAAAAGCGAA.......................................................................................................................................................................................... 22 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................GATACGAGCGCGCGGCGGCAGT.............................................................................................................. 22 3 2 0.50 1 0 0 0 0 0 0 1 0 0 0 0 0
...................TGGGAAAAACTGAACTGACT........................................................................................................................................................................................................................ 20 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................GACGACCGCGCGGCGG.................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
........................................CATTAAAAACGTGAG........................................................................................................................................................................................................ 15 1 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0 0

Anti-sense strand reads

AGTGTGACCCCGAATACTAATTTTTTTTGACTTGACTGAGGTTATTTTTGCACTCCATCTTTTTCGCTTAATTCAACTGTTAATTATGTGTGTCGTCGGCGTGCCATTGGTCGGCGGTTATGGCTATGCTTGCGCGCCGCCGTTGTCGTTAACGTGTGTATTTTCGGGTGTAGTTTGCGTTCGACGGGCGTTGGCGCCCGTGAATTTAAGGCTTTACGCAGGTGCATCACGTTTTAGGCTTAGAGTTAAGCTTAA
**********************************************************************....((.(((((.((...........................)).))))).))..((((..((((.......................))))))))***************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR618934
dsim w501 ovaries
 M024
male body		 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR902009
testis
 O002
Head
 M025
embryo
 O001
Testis
 SRR553487
NRT_0-2 hours eggs
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
...................................................................................................................................................................................................................................CACGTTTTAGGCTTAGAGTTA....... 21 0 1 4.00 4 1 0 3 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................CGTTTTAGGCTTAGAGTTAA...... 20 0 1 2.00 2 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................................CGTCGGCGTGCCGTTGGTC............................................................................................................................................... 19 1 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................................ACGTTTTAGGCTTAGAGTTAA...... 21 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................GCGGTTATGGCTATGCTTGC.......................................................................................................................... 20 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGTTGTCGTTAACCTGTG................................................................................................. 18 1 6 1.83 11 0 11 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................GTGCATCACGTTTTAGGC................ 18 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
............................................................................................................................................CGTTGTCGTTAACTTGTG................................................................................................. 18 1 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................ACTGTTAATTATGTGTGTCGT............................................................................................................................................................... 21 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
..................................................................................................................CGGTTATGGCTATGCTTGCG......................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
............................................................................................................GGTCGGCGGTTATGGCTATGC.............................................................................................................................. 21 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
....................................................................................................................................................................CGGGTGTAGTTTGCGTTCG........................................................................ 19 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0 0
................................................................................................................................................................................................................................CATCACGTTTTAGGCTTAGAG.......... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................................................................................................TCGGCGGTTATGGCTATGCTTG........................................................................................................................... 22 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
...........................................................................................................TGGTCGGCGGTTATGGCTAT................................................................................................................................ 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................CGGCGTGCCGTTGGTCGGC............................................................................................................................................ 19 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
......................................AGGTCACTTTTTCACTCCATC.................................................................................................................................................................................................... 21 3 2 1.00 2 0 0 0 0 2 0 0 0 0 0 0 0
........................................................................TCGACTGTTAATTATGTGTGTC................................................................................................................................................................. 22 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................GTGTGTTTTCGGGTGTAGTT................................................................................ 20 1 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................CAGGTGCATCACGTTTTAGG................. 20 0 1 1.00 1 0 0 0 0 0 0 0 0 0 1 0 0
..............................................................................................................CCGGCGGTTATGGCTATGCTT............................................................................................................................ 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................TATGCTTGCGCGCCGCCGTTG.............................................................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................................TAGGCTAGGAGTGAAGCTTAA 21 3 2 1.00 2 0 0 0 0 0 0 0 2 0 0 0 0
..................................................................................................................................................................................................................................TCACGTTTTAGGCTTAGAGTT........ 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
....................................................................TAATTCAACTGTTAATTATGT...................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
..............................CTTGACTGAGGTTATTTTTGCAC.......................................................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 0 0 0 0 1 0 0 0
............................................................................................................TGTCGGCGGTTATGGCTATGCT............................................................................................................................. 22 1 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0 0
............................................................................................................................................................TGTATTTTCGGGTGTAGTTTG.............................................................................. 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................CCACGTTTTAGGCTTAGAGTT........ 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
........................................................................TCGACTGTTAGTTATGTGTGTC................................................................................................................................................................. 22 2 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
........................................................................................................CATTGGTCGGCGGTTATGGCT.................................................................................................................................. 21 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................................CACGTTTTAGGCTTAGAGTT........ 20 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGTTGTCGTTAACCTGT.................................................................................................. 17 1 10 0.50 5 0 5 0 0 0 0 0 0 0 0 0 0
..............................................TTTGCACTCCATCTTTTGT.............................................................................................................................................................................................. 19 2 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................GTTGTCGTTAACCTGTG................................................................................................. 17 1 7 0.29 2 0 2 0 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGTTGTCGTTAACCTG................................................................................................... 16 1 20 0.25 5 0 5 0 0 0 0 0 0 0 0 0 0
...........................................................................................GTCGTCGGCGTGCAAT.................................................................................................................................................... 16 1 6 0.17 1 0 1 0 0 0 0 0 0 0 0 0 0
........................................................................................TGGGTCGTCGGCGTGC....................................................................................................................................................... 16 1 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
...........................................................................................................................................ACGTTGTCGTTAACCTGTG................................................................................................. 19 2 7 0.14 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................TTGTCGTTAACCTGTG................................................................................................. 16 1 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................ACTTAGAGTTAAGCT... 15 1 20 0.10 2 0 0 0 2 0 0 0 0 0 0 0 0
..........................................................................................................TTGGTCGGCGTTTTTGGTTA................................................................................................................................. 20 3 20 0.10 2 0 0 2 0 0 0 0 0 0 0 0 0
............................................................................................................................................CGTTGTCGTCAACCTGTG................................................................................................. 18 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0 0 0
.........................................................................................................................GGCCATGGTCGCGCGCCGC................................................................................................................... 19 3 17 0.06 1 0 0 0 0 1 0 0 0 0 0 0 0
.................................................................................................GGCTTGCGATTGGTCG.............................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
...................................................................................................................................................................................................GGCCCTGAATTTAAGG............................................ 16 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 0 1
..............................................................................................................................................TTGTCGTTAAGGTGTGTG............................................................................................... 18 2 20 0.05 1 0 0 0 1 0 0 0 0 0 0 0 0
.............................................................................................................................................GTTGTCGTTAACCTG................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Generated: 04/24/2015 at 02:19 AM