ID:

dsi_25190

Coordinate:

3l:11471601-11471750 -

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

exon [3l_11471404_11471600_-]; CDS [3l_11471404_11471600_-]; intron [3l_11471601_11475771_-]

No Repeatable elements found

Sense Strand Reads

--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CCCATATTTTCGGCGATAAAAGTCGCCTTGTAATTGGAAATAATCTGATAGTGTAAACATTTAATTATGGGCTTACACTACCATTTTTATTTGATTACAGCGTATCAAGTTCTAATTATTTGTAATGTAAGGAACAGCTTAGCTTATGATTACAATTCGTTTTCTTAAATTTTAATTTGAATGTTTTCAATCTATTTAAGTCTGCCGGCTGGTGTGCATGTGGGCCGTTCCAACATCAAATCCGTGGCAG ************************************************.(((((.((..(((..((((..........))))..)))..)).)))))((((.(((((((..((((..((((((((((((...........))))).)))))))............))))..)))))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M024 male body	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553487 NRT_0-2 hours eggs	GSM343915 embryo
.....ATTTTCGGCGATAAAAGT...................................................................................................................................................................................................................................	18	0	1	2.00	2	2	0	0	0	0
.................................................................................................................................................................................................................TGGTGTGCATGTGGGCCG.......................	18	0	1	1.00	1	0	0	1	0	0
..............GATAAAAGTCGCCTTGTA..........................................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
................TAAAAGTCGCCTTGTAATTGGAAA..................................................................................................................................................................................................................	24	0	1	1.00	1	0	1	0	0	0
........................GCCCTGTAATTGGAAA..................................................................................................................................................................................................................	16	1	9	0.11	1	0	1	0	0	0
.......................CGCCCTGTAATTGGA....................................................................................................................................................................................................................	15	1	13	0.08	1	0	0	0	1	0
......................................................................................................................................................................................................AGTCTCTCGGCTCGTGTGC.................................	19	3	20	0.05	1	0	0	0	0	1

Anti-sense strand reads

GGGTATAAAAGCCGCTATTTTCAGCGGAACATTAACCTTTATTAGACTATCACATTTGTAAATTAATACCCGAATGTGATGGTAAAAATAAACTAATGTCGCATAGTTCAAGATTAATAAACATTACATTCCTTGTCGAATCGAATACTAATGTTAAGCAAAAGAATTTAAAATTAAACTTACAAAAGTTAGATAAATTCAGACGGCCGACCACACGTACACCCGGCAAGGTTGTAGTTTAGGCACCGTC ************************************************.(((((.((..(((..((((..........))))..)))..)).)))))((((.(((((((..((((..((((((((((((...........))))).)))))))............))))..)))))))))))................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553486 Makindu_3 day-old ovaries	SRR618934 dsim w501 ovaries	SRR553488 RT_0-2 hours eggs	SRR553487 NRT_0-2 hours eggs
...................................................................................................CGCATAGTTCAAGATTAATAA..................................................................................................................................	21	0	1	2.00	2	2	0	0	0
.............................................................................................................................................................................................................................CCCGGCAAGGTTGTAGTTTAGGCACCGTC	29	0	1	1.00	1	1	0	0	0
................................................................................................................................................................................................................................GGCAACGTTGTAGTTTTGG.......	19	2	3	0.33	1	0	1	0	0
.................................................................................................................................................................................................................................GCAAGGTTGAAGTTTCGG.......	18	2	8	0.13	1	0	0	1	0
...................................................................................................................................................................................................................................AAGGTTGTAGTGTAG........	15	1	15	0.07	1	0	0	0	1
..................................................................................................................................................................................................................................CAAGGTTGTAGTTTC.........	15	1	17	0.06	1	0	0	1	0
.......................................................................................ATTATCTAATGTCGCA...................................................................................................................................................	16	2	20	0.05	1	1	0	0	0
......AAAAGCCGCTATATT.....................................................................................................................................................................................................................................	15	1	20	0.05	1	1	0	0	0

Generated: 04/24/2015 at 09:40 AM