ID:

dsi_25188

 Coordinate:

3l:15946861-15947010 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

Flybase annnotation

five_prime_UTR [3l_15946711_15946860_+]; exon [3l_15946711_15946860_+]; intron [3l_15946861_15948169_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AACAACAGTGATAACTACACAATTGGATTAATAAACTTGACACAAAAAAGGTGAGTGAAGTGAGCGAAATTACCACAGTGAACTCAAGTGAACCGAAAGCAAACTAATTTAAATTAATGGCTATTAGTTGTGAACTATGAGTCTGCAACACATGAAATGATGGTTGTTGCAAATGTACCTACATACACATAATAAAAACTCTTGGCCAAGAGCCTCCGCGTCATTAAGCCAATCGAACAAGCGAAACTTT
**************************************************(((.(((..((((......))))))).....((((((((..((........(((((((..............)))))))))..))).))))).((((((((((......)))..))))))).((((....)))).)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M023
head
.ACCACAGTGATAACT.......................................................................................................................................................................................................................................... 15 1 2 0.50 1 0 1 0 0 0 0
.......................................................................................................................................................AAGAAATGCTGGTTGTTGCAA.............................................................................. 21 2 2 0.50 1 1 0 0 0 0 0
...................................................................................................................................................................................................AAACTCTTGGCCAAGAGC..................................... 18 0 2 0.50 1 1 0 0 0 0 0
............AACTACACGATGGGATTA............................................................................................................................................................................................................................ 18 2 2 0.50 1 1 0 0 0 0 0
........................................................................................................................................................TGAAATGATGGTCGTT.................................................................................. 16 1 3 0.33 1 1 0 0 0 0 0
.............................................................................................................................................................TGATGTTTGTTGCAAATGA.......................................................................... 19 2 3 0.33 1 0 0 1 0 0 0
.......................................................................................................................GCTATTAGTTGTTAACT.................................................................................................................. 17 1 5 0.20 1 0 0 0 1 0 0
..................................................................................................................................................................................................................................ATCCAATCGAACAAGCGGAT.... 20 3 6 0.17 1 0 0 0 0 1 0
....................................................GAGTGTAGAGAGCGAAATT................................................................................................................................................................................... 19 2 8 0.13 1 1 0 0 0 0 0
...............................................................................................................................................................................................................AAGAGCCTCCACGTGA........................... 16 2 20 0.05 1 0 0 1 0 0 0
..........................................................................................................................................................AGATGATGGTTCTTGGAAA............................................................................. 19 3 20 0.05 1 0 0 0 0 0 1

Anti-sense strand reads

TTGTTGTCACTATTGATGTGTTAACCTAATTATTTGAACTGTGTTTTTTCCACTCACTTCACTCGCTTTAATGGTGTCACTTGAGTTCACTTGGCTTTCGTTTGATTAAATTTAATTACCGATAATCAACACTTGATACTCAGACGTTGTGTACTTTACTACCAACAACGTTTACATGGATGTATGTGTATTATTTTTGAGAACCGGTTCTCGGAGGCGCAGTAATTCGGTTAGCTTGTTCGCTTTGAAA
**************************************************(((.(((..((((......))))))).....((((((((..((........(((((((..............)))))))))..))).))))).((((((((((......)))..))))))).((((....)))).)))............************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR553488
RT_0-2 hours eggs
 M023
head
 M024
male body		 SRR902008
ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553485
Chicharo_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
.................................................................................................................................................................................................................CTCGGAGTCGCAGTCATT....................... 18 2 4 1.25 5 1 2 0 0 0 2 0 0
......................AACCAAATTATTTCAACTGTG............................................................................................................................................................................................................... 21 2 1 1.00 1 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................CTCGGAGTCGCAGTCAT........................ 17 2 4 0.75 3 3 0 0 0 0 0 0 0
.................................................................................................................................................................................................................CTCGGAGTCGCAGTCAATC...................... 19 3 14 0.71 10 0 5 5 0 0 0 0 0
.................................................................................................................................................................................................................CTCGGAGTCGCAGTTATTG...................... 19 3 15 0.53 8 0 0 8 0 0 0 0 0
..............................................................TCGCTTTACCTGTGTCACTTGA...................................................................................................................................................................... 22 3 2 0.50 1 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................TCGGAGTCGCAGTCATT....................... 17 2 11 0.36 4 2 0 0 0 2 0 0 0
........................................................................................................................................................................................TGTGTATTATTTTTG................................................... 15 0 7 0.29 2 0 0 0 0 0 0 2 0
.............................................................................................................................................................................................................................GGAATTCGGTTTGCTTGTTC......... 20 2 5 0.20 1 0 0 1 0 0 0 0 0
..................................TGAAGTGTGGTTTTTCCA...................................................................................................................................................................................................... 18 2 8 0.13 1 1 0 0 0 0 0 0 0
........ACCAATGATGTGTTGACCT............................................................................................................................................................................................................................... 19 3 17 0.12 2 0 2 0 0 0 0 0 0
...................................................................................................................................................................................................................CGGATGCGCGGGAATTCGG.................... 19 3 9 0.11 1 1 0 0 0 0 0 0 0
...............................................................AGCTTTAATGGTGTC............................................................................................................................................................................ 15 1 10 0.10 1 0 0 0 0 0 0 0 1
.................................................................................................................................................................................................................CTCGGAGTCGCAGTATGTC...................... 19 3 10 0.10 1 0 1 0 0 0 0 0 0
.................................................................................................................................................................................................................CTCGGAGGCGCAGTCAATG...................... 19 3 14 0.07 1 0 1 0 0 0 0 0 0
...............................................................................................................................................................................................................................AGTTCGGTTAGCTTG............ 15 1 15 0.07 1 1 0 0 0 0 0 0 0

Generated: 04/23/2015 at 11:02 PM