ID:

dsi_25183

 Coordinate:

2r:11870152-11870301 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-26.2 -26.2 -25.9

Flybase annnotation

exon [2r_11869367_11870151_+]; CDS [2r_11869367_11870151_+]; intron [2r_11870152_11871984_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
GGTCGCCAACGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGTTTGACAGCCAGGCTCCCGGAAGAGATGGCGTTGGCAGAAGGCAGTCGAGCATGCTTATCCAAGTTGGTTGTGGCGCTGGCATTTCTGGTATCTGATGAACAAAAATAAGCTTCCAAATTGCTCTGTATGAGACTGTGTAGTTTTGTTTGTACTAAGTTTATTTGTCGATGTGAACAGAT
*****************************************************************..((((...(((((((.(((...(((.(((...((.(((((........)))))))...))).))).))))))))))...))))......................******************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553485
Chicharo_3 day-old ovaries
 M025
embryo
 M023
head
 SRR553487
NRT_0-2 hours eggs
 SRR553486
Makindu_3 day-old ovaries
 M024
male body		 M053
female body
 SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 SRR902009
testis
 SRR618934
dsim w501 ovaries
.......................................................................................................................................................ATTTCTGGTATCTGATGAAC............................................................................... 20 0 1 3.00 3 0 3 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGTACTAAGTTTATTTGTCGATGTGA...... 27 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................................................................TAAGTTTATTTGTCGATGTGAACAGA. 26 0 1 2.00 2 2 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................TGGCTTTTCTGGTTTCTGACGA................................................................................. 22 3 1 2.00 2 0 0 0 2 0 0 0 0 0 0 0
.........CGCTGGTGATACTGATGACT............................................................................................................................................................................................................................. 20 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
..........................................................................................................................................................................................................................TGTACTAAGTTTATTTGTCGATGTGA...... 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
................................................................................................................................................CGCTGGCATTTCTGGTATCTGATGAACA.............................................................................. 28 0 1 1.00 1 0 0 0 0 0 1 0 0 0 0 0
................GATACTGATGACTCCGATTTTGAGG................................................................................................................................................................................................................. 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
............................................................................................................................................................................................................................TACTAAGTTTATTTGTCGATGTGAACAGA. 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
....................................................................................................................................................................................................................TTTGTTTGTACTAAGTTTATTTGTCGA........... 27 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0
.............................................................................................................................................................................................TGCTCTGTATGAGACTGTGTAGTTTTGTT................................ 29 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
.....................................GAGGCAGTGTCAGGTAGGC.................................................................................................................................................................................................. 19 2 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................................................................AAGTTTATTTGTCGATGT........ 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0 0
..................................TTTGAGGAAGTGGCAGGTAG.................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 0 0 1 0 0 0 0
.................................................................AGTAGTTTGACAGCCAGGCTC.................................................................................................................................................................... 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
........................................................................................GGAAGAGATGGCGTTGGCAGAAGGCAG....................................................................................................................................... 27 0 1 1.00 1 0 0 0 0 0 0 0 1 0 0 0
.......................................................................................................................................................ATTTCTGGTATCCGA.................................................................................... 15 1 6 0.50 3 0 0 0 0 3 0 0 0 0 0 0
.................................................................AGTGGTTTGACGGCCGGGCTC.................................................................................................................................................................... 21 3 2 0.50 1 0 0 1 0 0 0 0 0 0 0 0
...............TCATGCTGATGACTCCAATTT...................................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 0 0 0 0 0 0 1 0 0
..........................................................................................................................................TTGTGGCATTGGCATTTTTGGTA......................................................................................... 23 3 4 0.25 1 0 0 0 0 0 0 0 0 1 0 0
............................................................................................................................................................TGGTATCAGACGAAGAAAAA.......................................................................... 20 3 17 0.12 2 0 0 0 0 2 0 0 0 0 0 0
.....................................GAGGAAGTGGAAGGTGGGCGG................................................................................................................................................................................................ 21 3 14 0.07 1 0 0 0 0 0 0 0 0 0 1 0
....................................................................................TCCCGGACGAGATAGC...................................................................................................................................................... 16 2 14 0.07 1 0 0 0 0 1 0 0 0 0 0 0
...................................................................................................................................................TGGCATTTCTGGAAACTGGT................................................................................... 20 3 15 0.07 1 0 0 0 0 0 0 0 0 0 1 0
.....................................................GCCGAAAATGCAAGT...................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1
.........................................................................................................................................GTTCTGGCGCTGGAATT................................................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 0 0 1

Anti-sense strand reads

CCAGCGGTTGCGACCACTATGACTACTGAGGCTAAAACTCCTTCACCGTCCATCCGCTTTTACGTTCATCAAACTGTCGGTCCGAGGGCCTTCTCTACCGCAACCGTCTTCCGTCAGCTCGTACGAATAGGTTCAACCAACACCGCGACCGTAAAGACCATAGACTACTTGTTTTTATTCGAAGGTTTAACGAGACATACTCTGACACATCAAAACAAACATGATTCAAATAAACAGCTACACTTGTCTA
*******************************************************************************..((((...(((((((.(((...(((.(((...((.(((((........)))))))...))).))).))))))))))...))))......................***************************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR618934
dsim w501 ovaries
 M023
head
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 O002
Head
................................................................................................................GTCAGCTCGTACGAATAGGTT..................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTATTCGAAGGTTTAACCAGAGT..................................................... 23 3 1 1.00 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTATTCGAAAGTTTAACGAGAGT..................................................... 23 3 2 0.50 1 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................GAAAACACCACAGACTACT................................................................................. 19 3 20 0.35 7 0 0 0 2 0 2 2 0 0 1
...............................................................................................................................................................................TAGTCGAACGTTTAACGAGACT..................................................... 22 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................TTAGTCGAAGGTTTTACGAGAGA..................................................... 23 3 3 0.33 1 1 0 0 0 0 0 0 0 0 0
...............................................................................................................................................................................TAGTCGTAGGTTTAACGAGAGA..................................................... 22 3 4 0.25 1 1 0 0 0 0 0 0 0 0 0
.........................................................................................................................................................AATACCATAGACTACTCG............................................................................... 18 2 5 0.20 1 0 0 1 0 0 0 0 0 0 0
.................................................................................................................TCAGTTCGTGCGAATA......................................................................................................................... 16 2 20 0.15 3 0 0 0 0 1 0 0 2 0 0
................................................................................................................GTCAGTTCGTGCGAATA......................................................................................................................... 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................................GAAAATACCATAGACTAC.................................................................................. 18 2 11 0.09 1 0 0 1 0 0 0 0 0 0 0
..............................................................CGATCATCAAACTGACGGTT........................................................................................................................................................................ 20 3 12 0.08 1 0 0 0 1 0 0 0 0 0 0
........................................................................................................................................................AAGTACCATAGACTACT................................................................................. 17 2 16 0.06 1 0 1 0 0 0 0 0 0 0 0
.......................................................................................CCCTTCGCTACCGCAA................................................................................................................................................... 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0
.............................................................................................................................................................CCATAGTCTACTCGTTT............................................................................ 17 2 20 0.05 1 0 0 0 0 0 0 0 0 1 0
...............................................................................................................................................................ATAGACTACTGGCTTTTAAT....................................................................... 20 3 20 0.05 1 0 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................ACGAAGGTTTAAGGAGA....................................................... 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0 0
...................................................................................................................................................ACCGTGAAGTCCATGGACT.................................................................................... 19 3 20 0.05 1 0 0 0 0 1 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:11870102-11870351 + dsi_25183 GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGGCTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAACAG--AT
droSec2 scaffold_1:8692771-8693020 + GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGGCTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TC-------TCGATGT-GAACAG--AT
dm3 chr2R:11200273-11200522 + GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGGCTCC-------CGGAAGAG------T-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AATA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAACAG--AT
droEre2 scaffold_4845:14664457-14664705 - GGTCGCCA------A---------TGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGACTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAAT-A-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-GGTACTAAGTTTATT-TG-------TCGATGT-GAAAAG--GT
droYak3 2R:11127811-11128060 + GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGACTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTGCGTTTATT-TG-------TCGATGT-GAAAAG--GT
droEug1 scf7180000409672:60144-60396 + GGTGGCCA------A---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACGGCCAGGCTCC-------AGGAAGAG------AATGGCAT-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------AAAAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATTTTG-------TCGATGT-GAAAAT--AT
droBia1 scf7180000302143:207037-207285 - GGTCGCCA------A---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACGGCCAATCTCC-------AGGAAGAG------A-TGGCGT-TGGCAGGAG---------GCAGTGGAGCATG--------------CC---TACCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAA-AG--AT
droTak1 scf7180000415878:802463-802712 - GGTCGCCA------A---------TGGCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TC---------------------------------GAGGGCCGATCTCC-------AGGAAGAG------A-TGGCGT-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAAGAG--AT
droEle1 scf7180000491214:4063467-4063708 + GGTCGCCA------C---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------G--------GCTCC-------ACGAAGA----------------TGGCAGGAG---------GCAGTGGAGTATGTGGAG-----------TATTACCA------AATGTTGTGGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TA---AACA---------------------------AAAAAAAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAA--G--AT
droRho1 scf7180000776849:621818-622061 - GGTCGCCA------C---------TGCCGGCGATACCGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------G--------GCTCC-------ACGCAGC--TGGCAA-TGGCCG-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCA------AAAGTTGTGGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TA---A------------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAA--G--AT
droFic1 scf7180000453342:721042-721288 - GGTCGCCA------C---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------G--------GCTCC-------AGGGAGA--CGGAGA-TAGCCG-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCC------AAAGTTGTGGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-CG-------TCGATGT-GAA--G--AT
droKik1 scf7180000302476:219382-219672 + GGTGGCCG------C---------TGCCGGGGATACCGACGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATACAAGTAGT--------TT---------------------------------GACGGCCAGTCTTC-------CGTAAGAGAAG---G-TAGCGA-TGGCAGT-------GGAGGCAGTG-----TG--GAGGAGCAATGGCT---TACAAAAAAAGAATGTT--GGTTGTGGCGCT------------------GGGATT-------------------------------------------------------------------------------TCTGGTATCTGAAAATG---AACA----------AAAACAAAAAAGAAAAAG-AAACAA-GCTTCCA--AATTGCTCTGTATGAGACTGTTGTAGTT-TTTGTT-TGTACCAAGTTTATT-CG-------TGGATGT-GAGGAT--AT
droAna3 scaffold_13266:7619067-7619309 + GGTCGCGA------A---------TGCCGGCGATACGGATGACTCTGATTTTGAGGAAGTGGCAGGTAGGCGGAAATGCAAGTAGT--------TT---------------------------------GTCG-------------------------------A-CGGAGG-AGGCAGGAGGCACTGGTGGCAGTGGAGCATG--------------CT---TACAA-------AAGTT--GGTTGTGGCGCT------------------GGGATC-------------------------------------------------------------------------------TCTGGTATCTGA---TC---AAAAAC-------------------------G-AAATAA-GCTTCCA--AATCGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------ACGGCGT-GGAGAT--AT
droBip1 scf7180000396759:1197198-1197445 - GGTCGCGA------A---------TGCCGGGGACACGGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGGAAATGCAAGTAGT--------TT---------------------------------GTCG-------TCGCGGAGGCAGAAGGAG------A-TAG--------AGGAG---------GCAGTGGAGCATG--------------CT---TACAA-------AAGTT--GGTTGTGGCGCT------------------GGGATC-------------------------------------------------------------------------------TCTGGTATCTGA---TC---AAAAAC-------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------ACGGCGTTGAAGAGATAT
dp5 3:584937-585198 + GGTGGCTG------C---------TGCTCAAGACACAGACGACTCCGATTTTGAGGAAGTGGCAGGTAGGAGGAAATACAAGTAGT--------TT---------------------------------GTCT---ACGCTCC-------AGAAGGCG------AGTGGCGTGTCGCGTGTC--------GCGTTTGGAGCATG--------------CT---TATGA-------AAGTT--GGTTGTGGCGCTCGATGGTGTTAATAGGATGGCAT--------------------------------------------------------------------------------CCTGGTATCTGA---AA---AACA---------------------------A-----AA-GCTTCCA--AATTGCTCTGTATGAGACTG---TAGTA--TTGTTTTGTACT----TTATT-TGTATTTATTCGA-GT-GAA--A--AT
droPer2 scaffold_2:751220-751459 + GGTGGCTG------C---------TGCTCAAGACACAGACGACTCCGATTTTGAGGAAGTGGCAGGTAGGAGGAAATACAAGTAGT--------TT---------------------------------GTCT---ACGCTCC-------AGAAGGCG------AGTGGCGTGTC------------------------GCGTG-----------------------A-------AAGTT--GGTTGTGGCGCTCGATGGTGTTAATAGGATGGCAT--------------------------------------------------------------------------------CCTGGTATCTGA---AA---AACA---------------------------A-----AA-GCTTCCA--AATTGCTCTGTATGAGACTG---TAGTT--TTGTTTTGTACT----TTATT-TGTATTTATTCGA-GT-GAA--A--AT
droWil2 scf2_1100000004510:1385727-1385930 + CATTACCGGATCTGCTGCTGGAGGCGGTGGCGACTCGGATGATTCAGATTTTGAGGAAGTTGCAGGTAGGCGAAAATGCAAGTAGG--------T----------------------------------------------------------------------------------AGTAG---------ACAGT-----ATG---------------------CAG-------AGATC--GGTTGTGGCGCT------------------GTAGTT------------------------------------------------------------AGGCTAA------------ACTCGTATGTAA---TCCCCAAGA---------------------------A-AAATAACGCTTCCAAAAATTGCTCCATATGAGACTGC-GTAGTT--TTGTT-T------------------------------------------
droVir3 scaffold_10324:837727-838004 - dvi_795 GCTGGCTG------C---------TGGCGGCGACTCCGATGACTCTGACTTTGAGGAAGTTGCAGGTAGG---AAACGCAAGTAGAAAAAACCAAAAAAAAAAAAAAAAACAAGAATATAATGTTGATTGTAG-------TTGT-------------------------------GGATAAA---------GCAGTAG--CAG-------------GGCTTAATATCA------AAAGTT--GGTTGTGGTGTC------------------TTGTTT----------GTTGAACT-------------------------------------TAGCTAG-CAAAAATTCCAGAGAATCTCGTATCTGA---TT---A-CA------------------AAATAAA-TG-ATAAAA-GCTTCCAT-AATGGCTCCGTATGAGACTGC-GTAGTTATTTGTT-T------------------------------------------
droMoj3 scaffold_6496:2690777-2691039 - TCTAGCC------------------GCCGGCGACACCGATGACTCCGACTTCGAGGAAGTTGCAGGTAGG---AAACGAAAGTAGACGAAACAGTT---------------------------------GAAACACA-AATCC-------AGGTGT--------A-TGTAGT-TG-----AA---------GCAGGTGA--------------------------T-C-------AAGTT--GGTTGTGCTGTC-------------------GCATCTTTGTTGTTTGTTGATTC----------------------------------TGATAGTTAGGCAAAAATTCTAGAAATTCTC------------C---AAAGACAAAGAACATATACACGATATATATAA-TAATAA-GCTTCCAAAAATTGCTACGTTTGAGACTGC-GTAGGT--TT-----------------------------------------------
droGri2 scaffold_15245:8527365-8527645 - GGTCACA------------------GCTGGCGATACGGACGACTCCGACTTTGAGGAAGTTGCAGGTAGG---AAACGAAAGTAGAA-------------------------------------------------AATGTTG-------AGGA------------T--AAT-TATTAGTAG---------TGAATGAAGCACT-------AAAAGGGCT---TATC--------AAGTT--GGTTGTGGCGTC------------------G-CATACTTGTTGTTTGTTGATATTAATATTGATATTGATATGGATGTTGATCTTTGATGGTAGTTAG---AAAATTCTATAAATTCTGGTATCTGA---TTTAAAACA---------------------------AAAAACAA-GCTTCCA--AATTGCTCCGTATGAGACTGC-GTAGTT--TTGT---------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGGCTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAACAG--ATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...................................................................................................................................................................................................................................................................................ATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AAC.............................................................................................................................2013.00300300000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-TGTACTAAGTTTATT-TG-------TCGATGT-GA........2712.00200000020000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTATT-TG-------TCGATGT-GAACAG--A.2612.00200000020000000000
........................CGCTGGTGATACTGATGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTAAGTTTATT-TG-------TCGATGT-GA........2611.00100000010000000000
..........................................................................................................................................................................................................................................................CGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------.................................................................................................2811.00101000000000000000
...............................GATACTGATGACTCCGATTTTGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAGTTTATT-TG-------TCGATGT-GAACAG--A.2911.00100000010000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTGTT-TGTACTAAGTTTATT-TG-------TCGA..............2711.00100000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTGTATGAGACTGT-GTAGTT--TTGTT-...........................................2911.00100000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTTTATT-TG-------TCGATGT-..........1811.00100100000000000000
.................................................TTTGAGGAAGTGGCAGGTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100010000000000000
................................................................................AGTAGT--------TT---------------------------------GACAGCCAGGCTC...........................................................................................................................................................................................................................................................................................................................................................................2111.00110000000000000000
.......................................................................................................................................................GGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAG......................................................................................................................................................................................................................................................................................................................2711.00100000000000010000
droSec2
GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGGCTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TC-------TCGATGT-GAACAG--ATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..........................................................................................................................................GCTCC-------CGGAAGAG------A-TGGCGT-TGGCA.......................................................................................................................................................................................................................................................................................................................................2511.0010001
......................................ATGACTCCGATTTTGAGGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100
........................................................................................................................................AGGCTCC-------CGGAAGAG------A-TGG................................................................................................................................................................................................................................................................................................................................................1911.0010100
.................................TACTGATGACTCCGATTTTGAGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
dm3
GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGGCTCC-------CGGAAGAG------T-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AATA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAACAG--ATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTATT-TG-------TCGATGT-GAACAG--A.2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTATGAGACTGT-GTAGTT--TTGTT-...........................................2413.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTGTT-TGTACTAAGTTTATT-TG-------TC................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAGTTTATT-TG-------TCGATGT-GAACA.....2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TACTGATGACTCCGATTTTGAGGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................TCCGATTTTGAGGAAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA--AATTGCTCTGTATGAGACTGT-G........................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................GTGATACTGATGACTCCGATTTTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................ACTCCGATTTTGAGGAAGTGGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................AAGTT--GGTTGTGGCGCT------------------GGC......................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................ATACTGATGACTCCGATTTTGAGGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................GAAG---------GCAGTCGAGCATG--------------CT---..........................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTGT-GTAGTT--TTGTT-TG.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................GT--------TT---------------------------------GACAGCCAGGCTCC-------...................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TTCCA--AATTGCTCTGTATGAGACTGT-G........................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................GCGAAAATGCAAGTAGT--------TT---------------------------------GA......................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCTGTATGAGACTGT-GTAGTT--TTGTT-...........................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................GCTTCCA--AATTGCTCTGTATGAG...............................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................................................................................................................................TCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.................................TACTGATGACTCCGATTTTGAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAGTTTATT-TG-------TCGATGT-GAAC......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATGAGACTGT-GTAGTT--TTGTT-...........................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................CGGAAGAG------T-TGGCGT-TGGCAG......................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................T---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGC......................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000
.....CCA------A---------CGCTGGTGATACTGATGACT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................GACTCCGATTTTGAGGAAGTGGCAGGTG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTGGTGATACTGATGACTCCGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................T---TATCC-------AAGTT--GGTTGTGGCGCT------------------G........................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................TTGCTCTGTATGAGACTGT-GTAGTT--T................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................................................................................................................................GTT--GGTTGTGGCGCT------------------GGCA.....................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGACTGT-GTAGTT--TTGTT-TGTAC......................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGCTCTGTATGAGACTGT-GTAGG....................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................AAGTGGCAGGTAGGCGAAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TACTGATGACTCCGATTTTGAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCCA--AATTGCTCTGTATGAG...............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
....................................TGATGACTCCGATTTTGAGGAAGTGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................AGAG------T-TGGCGT-TGGCAGAAG---------GCAGTCG...................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTT-TGTACTAAGTTTATT-TG-------T.................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGCTCTGTATGAGACTGT-GTAGTT--TTGT.............................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATT-TG-------TCGATGT-GAACA.....1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................CCGATTTTGAGGAAGTG............................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................A---------------------------A-AAATAA-GCTTCCA--AATTG..........................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTT-TGTACTAAGTTTATT-TG-------TCGA..............2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................ATTTTGAGGAAGTGGCAGGTAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTAAGTTTATT-TG-------TCGATGT-GAA.......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTGTATGAGACTGT-GTAGTT--TTGTT-...........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCTGTATGAGACTGT-G........................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GCAAGTAGT--------TT---------------------------------GACAGCCAGG..............................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GCAGGTAGGCGAAAATGCAAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..TCGCCA------A---------CGCTGGTGAT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................T-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TA........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................T--TTGTT-TGTACTAAGTTTATT-TG-------TCGA..............2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.................................TACTGATGACTCCGATTTTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................TTTTGAGGAAGTGGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................TGACTCCGATTTTGAGGAAGTGGCAGGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..............A---------CGCTGGTGATACTGATGACTC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTACTAAGTTTATT-TG-------TCGATGT-GAA.......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................GT-TGGCAGAAG---------GCAGTCG...................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
droEre2
GGTCGCCA------A---------TGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGACTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAAT-A-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-GGTACTAAGTTTATT-TG-------TCGATGT-GAAAAG--GTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTATT-TG-------TCGATGT-GAAAAG--GT2211.0010000010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTTATT-TG-------TCGATGT-GAAAAG--GT2511.0010010000
................................ATACTGATGACTCCGATTTTGAGGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000010
.....................................................................................................................................................................................................................................................TGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTG.........................................................................................................................................2611.0011000000
........................................GACTCCGATTTTGAGGAAGTGGCAGGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
droYak3
GGTCGCCA------A---------CGCTGGTGATACTGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACAGCCAGACTCC-------CGGAAGAG------A-TGGCGT-TGGCAGAAG---------GCAGTCGAGCATG--------------CT---TATCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTGCGTTTATT-TG-------TCGATGT-GAAAAG--GTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...........................................................................ATGCAAGTAGT--------TT---------------------------------GACAGCCAGACTCC-------CGGA...............................................................................................................................................................................................................................................................................................................................................................3119.00900000000009
.................................................................................GTAGT--------TT---------------------------------GACAGCCAGACTCC-------...................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
..........................................................................................................................................................................GT-TGGCAGAAG---------GCAGTCGAGC................................................................................................................................................................................................................................................................................................................2111.00100000010000
.............................................................................................................................................................G------A-TGGCGT-TGGCAGAAG---------GCAGTC....................................................................................................................................................................................................................................................................................................................2311.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTATT-TG-------TCGATGT-GAAAAG--GT2411.00100100000000
............................................CCGATTTTGAGGAAGTGGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................GCTGGTGATACTGATGACTCCGAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...........................................................................ATGCAAGTAGT--------TT---------------------------------GACAGCCAGACTCC-------CGGG...............................................................................................................................................................................................................................................................................................................................................................3111.00100000000001
.............................................................................................................................................................G------A-TGGCGT-TGGCAGAAG---------GCAGTCG...................................................................................................................................................................................................................................................................................................................2411.00100000010000
....................................................................................................................................................................A-TGGCGT-TGGCAGAAG---------GCAGTC....................................................................................................................................................................................................................................................................................................................2211.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTACTGCGTTTATT-TG-------TCGATGT-GAAAAG--..2911.00100000010000
....GCCA------A---------CGCTGGTGATACTGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000
.........................................................................................................................................GACTCC-------CGGAAGAG------A-TGGCGT-T...........................................................................................................................................................................................................................................................................................................................................2211.00100000010000
droEug1
GGTGGCCA------A---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACGGCCAGGCTCC-------AGGAAGAG------AATGGCAT-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------AAAAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATTTTG-------TCGATGT-GAAAAT--ATSizeHit CountTotal NormTotal
No Reads
droBia1
GGTCGCCA------A---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------GACGGCCAATCTCC-------AGGAAGAG------A-TGGCGT-TGGCAGGAG---------GCAGTGGAGCATG--------------CC---TACCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAA-AG--ATSizeHit CountTotal NormTotal
No Reads
droTak1
GGTCGCCA------A---------TGGCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TC---------------------------------GAGGGCCGATCTCC-------AGGAAGAG------A-TGGCGT-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCC-------AAGTT--GGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAAGAG--ATSizeHit CountTotal NormTotal
No Reads
droEle1
GGTCGCCA------C---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------G--------GCTCC-------ACGAAGA----------------TGGCAGGAG---------GCAGTGGAGTATGTGGAG-----------TATTACCA------AATGTTGTGGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TA---AACA---------------------------AAAAAAAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAA--G--ATSizeHit CountTotal NormTotal
No Reads
droRho1
GGTCGCCA------C---------TGCCGGCGATACCGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------G--------GCTCC-------ACGCAGC--TGGCAA-TGGCCG-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCA------AAAGTTGTGGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TA---A------------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------TCGATGT-GAA--G--ATSizeHit CountTotal NormTotal
No Reads
droFic1
GGTCGCCA------C---------TGCCGGCGACACCGATGATTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATGCAAGTAGT--------TT---------------------------------G--------GCTCC-------AGGGAGA--CGGAGA-TAGCCG-TGGCAGGAG---------GCAGTGGAGCATG--------------CT---TACCC------AAAGTTGTGGTTGTGGCGCT------------------GGCATT-------------------------------------------------------------------------------TCTGGTATCTGA---TG---AACA---------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-CG-------TCGATGT-GAA--G--ATSizeHit CountTotal NormTotal
No Reads
droKik1
GGTGGCCG------C---------TGCCGGGGATACCGACGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGAAAATACAAGTAGT--------TT---------------------------------GACGGCCAGTCTTC-------CGTAAGAGAAG---G-TAGCGA-TGGCAGT-------GGAGGCAGTG-----TG--GAGGAGCAATGGCT---TACAAAAAAAGAATGTT--GGTTGTGGCGCT------------------GGGATT-------------------------------------------------------------------------------TCTGGTATCTGAAAATG---AACA----------AAAACAAAAAAGAAAAAG-AAACAA-GCTTCCA--AATTGCTCTGTATGAGACTGTTGTAGTT-TTTGTT-TGTACCAAGTTTATT-CG-------TGGATGT-GAGGAT--ATSizeHit CountTotal NormTotal
No Reads
droAna3
GGTCGCGA------A---------TGCCGGCGATACGGATGACTCTGATTTTGAGGAAGTGGCAGGTAGGCGGAAATGCAAGTAGT--------TT---------------------------------GTCG-------------------------------A-CGGAGG-AGGCAGGAGGCACTGGTGGCAGTGGAGCATG--------------CT---TACAA-------AAGTT--GGTTGTGGCGCT------------------GGGATC-------------------------------------------------------------------------------TCTGGTATCTGA---TC---AAAAAC-------------------------G-AAATAA-GCTTCCA--AATCGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------ACGGCGT-GGAGAT--ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
GGTCGCGA------A---------TGCCGGGGACACGGATGACTCCGATTTTGAGGAAGTGGCAGGTAGGCGGAAATGCAAGTAGT--------TT---------------------------------GTCG-------TCGCGGAGGCAGAAGGAG------A-TAG--------AGGAG---------GCAGTGGAGCATG--------------CT---TACAA-------AAGTT--GGTTGTGGCGCT------------------GGGATC-------------------------------------------------------------------------------TCTGGTATCTGA---TC---AAAAAC-------------------------A-AAATAA-GCTTCCA--AATTGCTCTGTATGAGACTGT-GTAGTT--TTGTT-TGTACTAAGTTTATT-TG-------ACGGCGTTGAAGAGATATSizeHit CountTotal NormTotal
No Reads
dp5
GGTGGCTG------C---------TGCTCAAGACACAGACGACTCCGATTTTGAGGAAGTGGCAGGTAGGAGGAAATACAAGTAGT--------TT---------------------------------GTCT---ACGCTCC-------AGAAGGCG------AGTGGCGTGTCGCGTGTC--------GCGTTTGGAGCATG--------------CT---TATGA-------AAGTT--GGTTGTGGCGCTCGATGGTGTTAATAGGATGGCAT--------------------------------------------------------------------------------CCTGGTATCTGA---AA---AACA---------------------------A-----AA-GCTTCCA--AATTGCTCTGTATGAGACTG---TAGTA--TTGTTTTGTACT----TTATT-TGTATTTATTCGA-GT-GAA--A--ATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
........................................................................................................................................ACGCTCC-------AGAAGGCG------AGTGGCGTGT...........................................................................................................................................................................................................................................................................................................................................2511.0010000010000
droPer2
GGTGGCTG------C---------TGCTCAAGACACAGACGACTCCGATTTTGAGGAAGTGGCAGGTAGGAGGAAATACAAGTAGT--------TT---------------------------------GTCT---ACGCTCC-------AGAAGGCG------AGTGGCGTGTC------------------------GCGTG-----------------------A-------AAGTT--GGTTGTGGCGCTCGATGGTGTTAATAGGATGGCAT--------------------------------------------------------------------------------CCTGGTATCTGA---AA---AACA---------------------------A-----AA-GCTTCCA--AATTGCTCTGTATGAGACTG---TAGTT--TTGTTTTGTACT----TTATT-TGTATTTATTCGA-GT-GAA--A--ATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCA--AATTGCTCTGTATGAGACTG---G.......................................................2711.001100000
..............................................................................................................................................C-------AGAAGGCG------AGTGGCGTGTC------------------------GCGT..............................................................................................................................................................................................................................................................................................................2411.001000001
..................................ACAGACGACTCCGATTTTGAGGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001001000
droWil2
CATTACCGGATCTGCTGCTGGAGGCGGTGGCGACTCGGATGATTCAGATTTTGAGGAAGTTGCAGGTAGGCGAAAATGCAAGTAGG--------T----------------------------------------------------------------------------------AGTAG---------ACAGT-----ATG---------------------CAG-------AGATC--GGTTGTGGCGCT------------------GTAGTT------------------------------------------------------------AGGCTAA------------ACTCGTATGTAA---TCCCCAAGA---------------------------A-AAATAACGCTTCCAAAAATTGCTCCATATGAGACTGC-GTAGTT--TTGTT-T------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
....................................................................................................................................................................................AG---------ACAGT-----ATG---------------------CAG-------AGATC--GGTTGT.................................................................................................................................................................................................................................................................2412.00200110
..............................................GATTTTGAGGAAGTTGCAGGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
.........................................................................................................................................................................................................ATG---------------------CAG-------AGATC--GGTTGTGGCGC............................................................................................................................................................................................................................................................2211.00100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCCAAAAATTGCTCCATATG.................................................................2211.00110000
.ATTACCGGATCTGCTGCTGGAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
CATTACCGGATCTGCTGCTGGAGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00100100
CATTACCGGATCTGCTGCTGGAGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.....................................................................................................................................................................................G---------ACAGT-----ATG---------------------CAG-------AGATC--GGTT...................................................................................................................................................................................................................................................................2111.00100100
.ATTACCGGATCTGCTGCTGGAGGCGGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.....CCGGATCTGCTGCTGGAGGCG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
droVir3
GCTGGCTG------C---------TGGCGGCGACTCCGATGACTCTGACTTTGAGGAAGTTGCAGGTAGG---AAACGCAAGTAGAAAAAACCAAAAAAAAAAAAAAAAACAAGAATATAATGTTGATTGTAG-------TTGT-------------------------------GGATAAA---------GCAGTAG--CAG-------------GGCTTAATATCA------AAAGTT--GGTTGTGGTGTC------------------TTGTTT----------GTTGAACT-------------------------------------TAGCTAG-CAAAAATTCCAGAGAATCTCGTATCTGA---TT---A-CA------------------AAATAAA-TG-ATAAAA-GCTTCCAT-AATGGCTCCGTATGAGACTGC-GTAGTTATTTGTT-T------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................ACTCTGACTTTGAGGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000010000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAT-AATGGCTCCGTATGAGAC.............................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.............................................TGACTTTGAGGAAGTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................GCAGGTAGG---AAACGCAAGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
..........................................CTCTGACTTTGAGGAAGTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000001000000000000000000000000000000000000000
......TG------C---------TGGCGGCGACTCCGATGACTCTGAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001000000000000000000000000000000000000000000000000000000000000001
............................................................................................................................................TTGT-------------------------------GGATAAA---------GCAGTAG--CC...............................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
..TGGCTG------C---------TGGCGGCGACTCCGAT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000001
.............................................................................................................................................................................................................................AATATCA------AAAGTT--GGTTGTGGT..............................................................................................................................................................................................................................................................2211.001000000000000000001000000000000000000000000000000000000000000000
............................................CTGACTTTGAGGAAGTTGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000010000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................AAAA-GCTTCCAT-AATGGCTCC......................................................................2111.001000000010000000000000000000000000000000000000000000000000000000
..............................................................................................................................................GT-------------------------------GGATAAA---------GCAGTAG--CAG-------------GG...............................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
.........................................................................................AACCAAAAAAAAAAAAAAAA............................................................................................................................................................................................................................................................................................................................................................................................................20200.153000000000000000000000000000003000000000000000000000000000000000
droMoj3
TCTAGCC------------------GCCGGCGACACCGATGACTCCGACTTCGAGGAAGTTGCAGGTAGG---AAACGAAAGTAGACGAAACAGTT---------------------------------GAAACACA-AATCC-------AGGTGT--------A-TGTAGT-TG-----AA---------GCAGGTGA--------------------------T-C-------AAGTT--GGTTGTGCTGTC-------------------GCATCTTTGTTGTTTGTTGATTC----------------------------------TGATAGTTAGGCAAAAATTCTAGAAATTCTC------------C---AAAGACAAAGAACATATACACGATATATATAA-TAATAA-GCTTCCAAAAATTGCTACGTTTGAGACTGC-GTAGGT--TT-----------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
GGTCACA------------------GCTGGCGATACGGACGACTCCGACTTTGAGGAAGTTGCAGGTAGG---AAACGAAAGTAGAA-------------------------------------------------AATGTTG-------AGGA------------T--AAT-TATTAGTAG---------TGAATGAAGCACT-------AAAAGGGCT---TATC--------AAGTT--GGTTGTGGCGTC------------------G-CATACTTGTTGTTTGTTGATATTAATATTGATATTGATATGGATGTTGATCTTTGATGGTAGTTAG---AAAATTCTATAAATTCTGGTATCTGA---TTTAAAACA---------------------------AAAAACAA-GCTTCCA--AATTGCTCCGTATGAGACTGC-GTAGTT--TTGT---------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 12:48 AM