ID:

dsi_25175

 Coordinate:

3l:7208512-7208699 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in read

Predicted structure

-11.0 -10.9 -10.5 -10.3

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

TCATATTACAGAAGACCAAAGATAAATCAACGCAAAAGGAGCAGGATGAGGTACTTATCCCACGGCTTAATCCTTCCGGACCCCGTGAACTTTGACATTCGAAAGTGGCGACCGAACGAGAGACACAACAGCAAACTAACCAGCTATTTTGGCCTTCCTTCCGTTCTCCTTCTTTTTCGACCCACTTCATTTTGGGCTTTATTTACATGTGGCCCACGCACGCAAAAACGCTATCCAGATTCTGCTGCAGCCCTTCACATACATACAACAGATTCCTGGCAAGCAATT
******************************************************************...........((......................((((((((.................................))))))))..))************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902008
ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
 O001
Testis
 SRR618934
dsim w501 ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR553485
Chicharo_3 day-old ovaries
 M024
male body		 M053
female body
........................................................................................................................................................................................................................................................AGCCCTTCACATACATACAACAGATT.............. 26 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................AAAGGAGCAGGATGAGGTACT......................................................................................................................................................................................................................................... 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0
..................................................................TTAATCCTTCCGGACCCCG........................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0
......................................................................................................................................ACTAACCAGCTATTTTGGCC...................................................................................................................................... 20 0 1 1.00 1 0 0 0 1 0 0 0 0 0 0 0
.................................AAAAGGAGCAGGATGAG.............................................................................................................................................................................................................................................. 17 0 2 0.50 1 0 0 0 0 1 0 0 0 0 0 0
...........................................................................CGGGACCCCGTGAAC...................................................................................................................................................................................................... 15 1 2 0.50 1 0 0 0 0 0 1 0 0 0 0 0
.............................................................................AGACCCCGTGAACTTT................................................................................................................................................................................................... 16 1 3 0.33 1 0 1 0 0 0 0 0 0 0 0 0
.............................................................................AGACCCCGTGAACCTT................................................................................................................................................................................................... 16 2 15 0.33 5 0 5 0 0 0 0 0 0 0 0 0
..............................................................................GACCCCGTGAACCTTAACT............................................................................................................................................................................................... 19 3 12 0.25 3 0 3 0 0 0 0 0 0 0 0 0
..............................................................................GACCCCGTGAACTTTAACT............................................................................................................................................................................................... 19 2 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0
................CAAAGTTAAATCCACGCAA............................................................................................................................................................................................................................................................. 19 2 6 0.17 1 0 0 0 0 1 0 0 0 0 0 0
.....................................................................................................................................................................................................TTTATTTACATGTAGACC......................................................................... 18 2 7 0.14 1 0 0 0 0 0 0 0 1 0 0 0
...............................................................................ACCCCGTGAACCTTTAC................................................................................................................................................................................................ 17 2 9 0.11 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................GAACGTGGACATTCGAATGT...................................................................................................................................................................................... 20 3 9 0.11 1 0 0 0 0 0 0 1 0 0 0 0
..............................................................................GACCCCGTGAACCTTTACT............................................................................................................................................................................................... 19 3 9 0.11 1 0 0 0 0 0 1 0 0 0 0 0
..............................................................................GACCCCGTGAACCTTA.................................................................................................................................................................................................. 16 2 19 0.11 2 0 2 0 0 0 0 0 0 0 0 0
.......................................................................................................AGTGGCGAGCGAACG.......................................................................................................................................................................... 15 1 12 0.08 1 0 0 0 0 0 0 0 0 1 0 0
...................................................................................CATGAACTTTGACCTTCG........................................................................................................................................................................................... 18 2 13 0.08 1 0 0 0 0 0 0 0 0 0 1 0
.......................................................................................................................................................................................................AATTTACAGGTGGCCCA........................................................................ 17 2 18 0.06 1 0 0 0 0 1 0 0 0 0 0 0
......................................................TTAACCCACGGCTAAATCTT...................................................................................................................................................................................................................... 20 3 18 0.06 1 0 0 0 0 0 0 0 0 0 0 1
............................AACGGAAAAGGAGCA..................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................TAGTGGCGATCGAACG.......................................................................................................................................................................... 16 2 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0
..............................................................................GACCCCGTGAACCTTT.................................................................................................................................................................................................. 16 2 20 0.05 1 0 0 0 0 1 0 0 0 0 0 0
.......................................................................................................................................................................CCTTCTTTTTGGACC.......................................................................................................... 15 1 20 0.05 1 0 0 0 0 0 0 1 0 0 0 0

Anti-sense strand reads

AGTATAATGTCTTCTGGTTTCTATTTAGTTGCGTTTTCCTCGTCCTACTCCATGAATAGGGTGCCGAATTAGGAAGGCCTGGGGCACTTGAAACTGTAAGCTTTCACCGCTGGCTTGCTCTCTGTGTTGTCGTTTGATTGGTCGATAAAACCGGAAGGAAGGCAAGAGGAAGAAAAAGCTGGGTGAAGTAAAACCCGAAATAAATGTACACCGGGTGCGTGCGTTTTTGCGATAGGTCTAAGACGACGTCGGGAAGTGTATGTATGTTGTCTAAGGACCGTTCGTTAA
**************************************************************************************************************************************...........((......................((((((((.................................))))))))..))****************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M023
head
 SRR902009
testis
 SRR902008
ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M024
male body		 SRR553488
RT_0-2 hours eggs
 SRR1275487
Male larvae		 SRR553486
Makindu_3 day-old ovaries
.............................................................................................................................................................AAAGGCAAGAGGAAGAAAAAGC............................................................................................................. 22 1 1 1.00 1 0 0 1 0 0 0 0 0 0
...............................................................................................................GGCTTGCTCTCTGTGTTGTCG............................................................................................................................................................ 21 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.............CCGGTTTCTATTTAGTTGCGT.............................................................................................................................................................................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................TTTGCGATAGGTCTGAGACGAC......................................... 22 1 1 1.00 1 0 1 0 0 0 0 0 0 0
........................................................................................................................................................................................................................................................TCGGGAATTGTATGAATG...................... 18 2 3 0.67 2 0 0 0 0 0 2 0 0 0
.............................................................................................................................................TCGATAAAGCCGGAAG................................................................................................................................... 16 1 3 0.67 2 0 0 0 2 0 0 0 0 0
...............................................................................................GTAAGCTTCCAGCGCT................................................................................................................................................................................. 16 2 20 0.40 8 0 0 0 0 8 0 0 0 0
............................................................................................................GCTGGCTTGTTCTCTG.................................................................................................................................................................... 16 1 4 0.25 1 0 0 0 0 0 0 1 0 0
..............................................................................................TGTAAGCTTCCAGCGCT................................................................................................................................................................................. 17 2 5 0.20 1 0 0 0 0 1 0 0 0 0
................GTTTCAATTTAGGTGCGTTAT........................................................................................................................................................................................................................................................... 21 3 6 0.17 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................................................................TTGCGAATGGTTTAAGACGA.......................................... 20 3 9 0.11 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................................................................................GGTGAAGAAAAACCTGTAAT....................................................................................... 20 3 20 0.10 2 0 0 0 0 2 0 0 0 0
...............................................................CCGACGAAGGAAGGCCTGG.............................................................................................................................................................................................................. 19 3 20 0.10 2 0 0 0 2 0 0 0 0 0
....TAATATCTTCTGCTGTCTAT........................................................................................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 1 0 0 0 0
.............................................................................CTTGGGGCACTTGACATTG................................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 0 0 1 0 0 0
...............................................................................................................................................................................................................................TTTTCGCGGTAGGTCAAAGA............................................. 20 3 14 0.07 1 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................TATATTGTCTAAGGA........... 15 1 20 0.05 1 0 0 0 0 0 0 0 0 1
.............................................................................................................................................................GGAGGCATGAGGAAGAA.................................................................................................................. 17 2 20 0.05 1 0 0 1 0 0 0 0 0 0
.......TGTCTTATGGTTTCT.......................................................................................................................................................................................................................................................................... 15 1 20 0.05 1 0 0 0 1 0 0 0 0 0

Generated: 04/23/2015 at 08:44 PM