ID:

dsi_25163

Coordinate:

3r:10485953-10486010 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

CDS [3r_10485792_10485952_+]; exon [3r_10485711_10485952_+]; CDS [3r_10486011_10486191_+]; exon [3r_10486011_10486191_+]; intron [3r_10485953_10486010_+]

No Repeatable elements found

Sense Strand Reads

##################################################----------------------------------------------------------################################################## ACGGAGCTTCATTCCCGGGTCACCCAAACCGGCAGCAAAGAGATCCAGGCGTGAGTAAACAAACCTGAATTAAAGTGAACCATTGTCAATATAAACCTTCTTCGCTAGTCACATACTGCTGGGCTCCAAGGGCGTGGACCTGCCCAAGCTGAACCAGA ************************************************.......................((((((.....((........))....))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR618934 dsim w501 ovaries	SRR553486 Makindu_3 day-old ovaries	SRR902009 testis	SRR553485 Chicharo_3 day-old ovaries	SRR553488 RT_0-2 hours eggs	GSM343915 embryo	SRR553487 NRT_0-2 hours eggs
.....................................................................................................................GCTGGTCTCCAAGGG..........................	15	1	14	12.79	179	174	2	0	3	0	0	0
..................................................................................................................ACTGCTGGTCTCCAAGGG..........................	18	1	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................GCTGGTCTCCAAGGGCG........................	17	1	2	1.00	2	2	0	0	0	0	0	0
.................................................................................................................TACTGCTGGGCTCCAAGGGCGTGGAC...................	26	0	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................TTCGCAAGTCCCATAATGCTGG....................................	22	3	5	0.40	2	0	0	2	0	0	0	0
...............................................................................................................AACACTGCTGGTCTCCAAGG...........................	20	3	3	0.33	1	1	0	0	0	0	0	0
.....................................................................................................................GCTGGTCTCCAAGGGC.........................	16	1	6	0.33	2	1	0	0	1	0	0	0
......................................................................................................................CTGGGCTCAAAGGGCGCG......................	18	2	6	0.17	1	0	0	0	0	1	0	0
.....................................................................................................................GCTGGTCTCCAAGGGCCT.......................	18	2	6	0.17	1	1	0	0	0	0	0	0
.................................................................TGAATTAAAGAGAAGGATTG.........................................................................	20	3	15	0.07	1	0	0	0	0	0	1	0
.....................ACCCAGACCGTCAGCTAAG......................................................................................................................	19	3	17	0.06	1	0	0	0	0	0	0	1
.....................................................................................................................GCTGGTCTCCAAGGGCC........................	17	2	19	0.05	1	1	0	0	0	0	0	0
.....................................................................................................................GCTGGTCTCCAAGGGCAT.......................	18	2	20	0.05	1	1	0	0	0	0	0	0
.....GGTTCGTTCCCGGGTCGC.......................................................................................................................................	18	3	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................ACCTACTACTGGGCTC................................	16	2	20	0.05	1	1	0	0	0	0	0	0

Anti-sense strand reads

TGCCTCGAAGTAAGGGCCCAGTGGGTTTGGCCGTCGTTTCTCTAGGTCCGCACTCATTTGTTTGGACTTAATTTCACTTGGTAACAGTTATATTTGGAAGAAGCGATCAGTGTATGACGACCCGAGGTTCCCGCACCTGGACGGGTTCGACTTGGTCT ************************************************.......................((((((.....((........))....))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR902008 ovaries	SRR553487 NRT_0-2 hours eggs	SRR902009 testis	SRR553486 Makindu_3 day-old ovaries
...................................................................................................GAAGCGTTCAGGGTATTACGACC....................................	23	3	1	1.00	1	1	0	0	0
.....................................................TCATTTGTTCGGACTT.........................................................................................	16	1	3	0.33	1	0	1	0	0
....................................................................................................AAGCGTTCAGGGTATTACGACC....................................	22	3	5	0.20	1	1	0	0	0
...................................................................................................GAAGCGTTCAGGGTATTACGA......................................	21	3	6	0.17	1	0	0	1	0
..CCTCGATGTAAGGGCT............................................................................................................................................	16	2	20	0.05	1	0	0	0	1

Generated: 04/24/2015 at 10:42 AM