ID:

dsi_25136

 Coordinate:

2r:16717623-16717913 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-17.2 -17.1 -16.7 -16.6

Flybase annnotation

CDS [2r_16717914_16717932_-]; five_prime_UTR [2r_16717933_16717978_-]; exon [2r_16717914_16717978_-]; exon [2r_16717468_16717622_-]; CDS [2r_16717468_16717622_-]; intron [2r_16717623_16717913_-]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGGCAACGAAGTCATAACAAAAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATCCAAAATATATTATGGCCACACGCTCGAAATTGTCGTCAATAAGGCCTCACGTGATGATCTTCGATCGGAGCACCGACATCCCCGAAATACCCGACAAATATTGAGATTTGCGCATGCGCAGCCCATTAGAGATCTGTGACCCGTCCCCCAAAAAACGGGAATGGGGAGATCTTTCCGATTCGCTAATTGATCTAATGTGCTGCGAGAGGCCTGCCTGTACCTCTGTTTATGAATTGAATAACGATCCGTTGGTCAATAATCAATATTTGCTGTCGTTTGCAGTCTATGTGCCCAAGCGGATTAACGTGGCTATCATGCTCTTCATGGCCTGC
*********************************************************************************************************************************************************************************************************.............((((....(((...((((((((....((..((((...))))..)))).))))))))).))))******************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 M023
head
 M053
female body
 SRR553487
NRT_0-2 hours eggs
 O001
Testis
 SRR618934
dsim w501 ovaries
 GSM343915
embryo
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
..GCAACGAGGTCTTAACA.................................................................................................................................................................................................................................................................................................................................................................................... 17 2 13 5.85 76 76 0 0 0 0 0 0 0 0
.............................................................................................................................................................................................................................................................................................................................................GTTTGAAGTCTATGTGCC........................................ 18 1 1 2.00 2 0 2 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................................................CTGCGAGAGGCCTGCCTG................................................................................................................... 18 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.................................GGCCTTCATGCCGTGCTGTAA................................................................................................................................................................................................................................................................................................................................................. 21 0 1 1.00 1 0 0 1 0 0 0 0 0 0
....................................................................................AAAATTGTCGTCAATAACTCCT............................................................................................................................................................................................................................................................................................. 22 3 1 1.00 1 0 0 0 1 0 0 0 0 0
.........................................................................................................................................................................................................GTCCCCCAAAAAACGGGAATGGGGA..................................................................................................................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
.................................................................................................ATAAGGCCTCACGTGATGA................................................................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.................................................................................................................................................................................................................................................................................................................................ATATTTGCTGTCGTATGTA................................................... 19 2 3 0.33 1 0 0 0 0 0 0 1 0 0
..............................................................................................................................................................................................................................................................................................TATGATTTGAGTGACGATCC..................................................................................... 20 3 3 0.33 1 0 0 0 0 0 1 0 0 0
.....................................TTCATACCGTGCTGT................................................................................................................................................................................................................................................................................................................................................... 15 1 4 0.25 1 0 0 0 0 0 1 0 0 0
..................................................................................................................................................................................................................AAAACGGGAATGGGAAGA................................................................................................................................................................... 18 1 4 0.25 1 0 0 0 0 0 1 0 0 0
.............................................................................................................GGGATGATCTTCGATCA......................................................................................................................................................................................................................................................................... 17 2 19 0.11 2 0 0 0 1 0 0 0 0 1
..............................................................................................................................................................................................................................................................................TTCCTGTACCTCTTTTTA....................................................................................................... 18 2 10 0.10 1 0 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................................TTTTTCGGATTCGCTAAT................................................................................................................................................. 18 2 13 0.08 1 0 0 0 0 0 1 0 0 0
.....ACGAAGTCGTAACAA................................................................................................................................................................................................................................................................................................................................................................................... 15 1 13 0.08 1 0 0 0 1 0 0 0 0 0
.............................................................................................................ATGATGATCTTCGAT........................................................................................................................................................................................................................................................................... 15 1 16 0.06 1 1 0 0 0 0 0 0 0 0
...........................................................................................................................................................................................................................................................................GCCTGCCTGTGGCTCTGTTG........................................................................................................ 20 3 16 0.06 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................................................................................................................CTGTACCTCTCTTTATC..................................................................................................... 17 2 20 0.05 1 0 0 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................................................TGTGCTGTGAGAGGCCCC....................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 1 0 0 0
................................................................................................................................GTACCGACGTACCCGAAA..................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 1 0

Anti-sense strand reads

TCCGTTGCTTCAGTATTGTTTTCGGCGGCTTTACCGGAAGTACGGCACGACATTCATAGGTTTTATATAATACCGGTGTGCGAGCTTTAACAGCAGTTATTCCGGAGTGCACTACTAGAAGCTAGCCTCGTGGCTGTAGGGGCTTTATGGGCTGTTTATAACTCTAAACGCGTACGCGTCGGGTAATCTCTAGACACTGGGCAGGGGGTTTTTTGCCCTTACCCCTCTAGAAAGGCTAAGCGATTAACTAGATTACACGACGCTCTCCGGACGGACATGGAGACAAATACTTAACTTATTGCTAGGCAACCAGTTATTAGTTATAAACGACAGCAAACGTCAGATACACGGGTTCGCCTAATTGCACCGATAGTACGAGAAGTACCGGACG
*******************************************************************************************************************.............((((....(((...((((((((....((..((((...))))..)))).))))))))).))))********************************************************************************************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR553486
Makindu_3 day-old ovaries
 SRR618934
dsim w501 ovaries
 SRR553487
NRT_0-2 hours eggs
 M025
embryo
 SRR902009
testis
 SRR553485
Chicharo_3 day-old ovaries
 GSM343915
embryo
 SRR553488
RT_0-2 hours eggs
........................................................................................................GAATGCGCTACTAGAAG.............................................................................................................................................................................................................................................................................. 17 2 3 5.67 17 17 0 0 0 0 0 0 0
.....TGCTTCAGTATTGTTT.................................................................................................................................................................................................................................................................................................................................................................................. 16 0 6 1.00 6 1 4 0 0 0 1 0 0
.........................................................................................................AATGCGCTACTAGAAG.............................................................................................................................................................................................................................................................................. 16 2 20 0.50 10 10 0 0 0 0 0 0 0
......................................................................................................................................TGTAGGGGATTTATAGGCTTT............................................................................................................................................................................................................................................ 21 3 2 0.50 1 0 1 0 0 0 0 0 0
........................................................................................................GAATGCGCTACTAGAA............................................................................................................................................................................................................................................................................... 16 2 19 0.42 8 8 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................................................................................................AGATACCCGGGCTCGCC................................. 17 2 3 0.33 1 0 0 1 0 0 0 0 0
....................................................................................................................................................................................................................TTGTCCTTACCCTCCTAGAAA.............................................................................................................................................................. 21 3 4 0.25 1 0 0 1 0 0 0 0 0
.....................................................TCCTAGGGTTTATATTATACC............................................................................................................................................................................................................................................................................................................................. 21 3 4 0.25 1 0 0 0 1 0 0 0 0
..................TTTTCGGCGGCTTGAGCGG.................................................................................................................................................................................................................................................................................................................................................................. 19 2 4 0.25 1 0 0 0 0 1 0 0 0
.......................................................................................................................................................................TCGCGTGCGCGTCGGGTCAT............................................................................................................................................................................................................ 20 3 10 0.10 1 0 0 0 0 0 0 1 0
...........................................................................................AGCAGTCGTCCCGGAGTGC......................................................................................................................................................................................................................................................................................... 19 3 11 0.09 1 0 0 0 0 0 0 0 1
......................................................................................................CGGAATGCTCTACTAG................................................................................................................................................................................................................................................................................. 16 2 20 0.05 1 1 0 0 0 0 0 0 0
...........AGTATTGTTCTCGGCT............................................................................................................................................................................................................................................................................................................................................................................ 16 2 20 0.05 1 0 0 1 0 0 0 0 0
.......................................................................................................CGAATGCGCTACTAGAAG.............................................................................................................................................................................................................................................................................. 18 3 20 0.05 1 1 0 0 0 0 0 0 0
..................................................................................................................................TCGATGTAGGGGCCTTAT................................................................................................................................................................................................................................................... 18 3 20 0.05 1 0 1 0 0 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 2r:16717573-16717963 - dsi_25136 AGGCAAC------GAA---GTCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CAAA---------------------------------------------------------------ATAT----ATTATGGCCACACGC------TCGAAATT-------------------------------G--TCGTCAATA------AG-GCCTCACGTGATGATCTTCG--------------A----TCGGAGCACCGACA--------TCCCCGAAATACC------------------------------------C-GA----CAAATATTGAGAT----------------TTGCGCATGCGCAGCCCATTAGAGATC-------------TGTGA------CCCGT------------------C--------CCCCA--AAAAAC-----GGGAA---------TGGGGAGATCTT--------------TC--------CGATT---CGCTAATTGATCTAATG-TGC-TGC-GAGAGGCCTG--CCTGTACCTCT--GTTTATGAATTGAATAA-CGATC-------CG-T-----------TGGTCAATAATCAATATTTGCT--------------------------G-TCGT-TTGCAGTCTATGTGCCCAAGCGGATTAACGTGGCTATCATGCTCTTCATGGCCTGC
droSec2 scaffold_1289:4802-5211 - AGGCAAC------GAA---GTCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAA---------------------------------------------------------------ATAT----ATTATGGCCACACGC------TCGGAATT-------------------------------G--TCGTCAATA------AG-GCCTCACGTGATGATCTTCG--------------A----TCGG---AGCGGAGCACCGACATCCCCGAAATCCCC----G--------------AC-----ATG--TTATC-CAC-CACAAATATTGAGAT----------------TTGCGCACGCGCAGCCCATTAGAGATC-------------TGTGA------CCCGT------------------C--------CCCCA--AAAAAC-----GGGAA---------TGGGGAGATCTT--------------TC--------CGATT---CGCTAATTGATCTAATG-TGC-TGC-GAGAGGCCTG--CCTGTACCTCT--GTTTATGAATTTAATAA-CGATC-------CG-T-----------TGGTCAATAATCAATATTTGCT--------------------------G-TCGT-TTGCAGTCTATGTGCCCAAGCGGATTAACGTGGCGATCATGCTCTTCATGGCCTGC
dm3 chr2R:16137357-16137762 - AGGCTAC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAA----------------------------------------------------------------TAT----ATTATGGCCACACGC------TCGGAATT-------------------------------G--TCGTCAATA------AG-GCCTCACGTGATGATCTTCG--------------A----TCGGAGCACCGACA--------TCCCCGAAATCCCC----G--------------AC-----ATG--ATATC-CAT-CACAAATATTGAAAT----------------TTGCGCATGCGCAGCCCATTAGAAATC-------------TGTGA------CCCGT------------------C--------CCCAAAAAAAAAC-----GGGAA---------TGGGGAGATCTT--------------TT--------CGATC---CGCTAATTGATCTAACG-TGT-TGC-GAGGGGCCTG--CCTGTACCTCT--ATTCATAAATTGAATAA-CGATC-------CG-T-----------TGGTCAATAATCAATATTTGCT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGCGGATTAACCTGGCGATCATGCTCTTCATGGCCTGC
droEre2 scaffold_4845:10287759-10288136 - AGGCAAC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAAT---------A-------------------------------------------------------CATATATCATTGCCACACGC-------------------------------------------------CGTCAAAA------AC-GCCTCACGTGAT---CTTCC--------------A----T-TTCGCACCGAGA--------TCC---------CC----GAAA-----------TGAT---ATG--ATATC-CAG-CGCAAATATTGAAAT----------------TTGCCCATGCGCAGCCCATTAGAGAGC-------------TACGA------CCCAG------------------C--------CC-----AAAAAC-----GGGAA---------TG--GAGATCTT--------------TC--------CGATC---CGCTAATTGATCTAATGATGC-TGCCGAGGGGCCTGTTCG------GAT--ATCAA-AAATTAAATAA-CGATC-------TG-T---------------CAATAATCAATATTTGCT--------------------------G-TCGT-TTGCAGTCTATGTCCCCAAGCGGATTAACCTGGCGATCATGCTCTTCATGGCCTGC
droYak3 2R:13065755-13066146 + AGGCAAC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAAT---------ATAC-----------------------A--------------------T--------ACGTATTATTGCCACACGC-------------------------------------------------CATCAATAACGA-TTCAGCCTCACGTGAT---CTTCG--------------A----TCCGCGCATCGAAA--------TTC---AAATCCAAATC-C--------------AA-----ATG--ATATC-CAG-CTCAAATATTGAGAT----------------TTGCCCATGCGCTGCCCATTAGAGAGC-------------TGCGA------CATGG------------------C--------CC-----AAAAAC-----GGGAA---------GA--GAGATCTT--------------TC--------CGATT---CGCTAATTGAGCTAATGATGC-TGC-GAGGGGCCTGTGTG------GAT--ATCGA-AAATTGAATAA-TGATC-------TG-T---------------CAATAATCAATATTTACT--------------------------G-TCGT-TTGCAGTCTATGTGCCCAAGCGGATCAACCTGGCGATCATGCTCTTCATGGCCTGC
droEug1 scf7180000409474:1840220-1840644 + AGGCACC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CACTT-----------------------------------------GAAC-----------GA--GTATAT----A---TTGCCACACACACACTTTCGGATTCACCAGAAGC--ACGAGTCATGAGCGAAAAATGTCCCATCAATA------AC-ACCTCACGTGCT---CTTCG--------------A----TCGGCCAAGTGAAA--------ACC---------CC----GAAA-----------AAAT---ATT--GTTTC-GAA-TTCAAATATTGAAAT----------------TTGCGCATGCGCAACCCATTAGAGATC-------------TCCGA------CCCGC------------------C--------C-------AAAAC-----GGGAA---------TT--GGGATCTT--------------GC--------CGATC---CGCTAATTGAACTAATG-GGC-TGC-TAGGGGCCTGTGTC------GCT--ATCGA-AAATTGAATAA-CGATC-------TG-T---------------CAATAACCAATATTTACT--------------------------G-TCGT-TTGCAGTCTATGTGCCTAAGCGGATCAACCTGGCGATCATGCTCTTCATGGCCTGT
droBia1 scf7180000302291:3184792-3185174 + AGGCAGC------GGA---GCCATAACAA-AAGCCTCCGAGATGGCCTTCATGCCGTGCTGTAAGTACC---AAAA----------------------------------------------------------------TGTATTTATTATTGCCACACGC------TCGGAATCGCCCGCAGC--ACGAGTCAT--GCGAAAAATGTCCCATCAATA------AC-GCCTCACGTGAT---CTTCG--------------A----TCCGCGAAGTGAAC--------CCC---------------CA-------------AA-----ATG--AAATC-GAG-CTCAAATATTGGAAT----------------TTGCGCATGCGCAGCCCATTAGAGATC---------------------------------------------------------------------------------------------AGGTCTT--------------TC--------CGATC---CGCTAATTGAGCTAATG-GGC-TGC-GAGGGGCCTGTGCC------GCC--ATCGA-AAACAGAATAT-CCACC-------TG-T---------------CAATAACCAATATTTGCT--------------------------G-TCGC-TCGCAGTCTATGTGCCCAAGCGGGTCAACCTGGCCATCATGCTCTTCATGGCCTGC
droTak1 scf7180000412369:53556-53974 - AGGCTCC------CGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CAAA---------------------------------------------------------------ATATATTTATTATTGCCACACGC------TCGGATTCGCTTGAAGT--TCGAGTCATGAGCGAAAAATGTCCCATCAATAACGA-AAC-GCCTCACGTGAT---CTTCG--------------A----TCGGCTAAGTGAAA--------TCC---------CC----GAAA-----------AA-----ATG--ATATT-GAG-CTCAAATATTGAAAT----------------TTGCGCATGCGCAGCCCATTAGAGATC-------------TGCGA------CCCGC------------------C--------CC--------AAC-----GGGAA---------TA--GAGATCTT--------------TC--------CGATC---CGCTAATTGAGCTAATG-TGC-TGC-GAGGGGCCTGTGCC------GCT--ATCGA-AAATTGAGTAA-CGATC-------TG-T---------------CAATAACCAATATTTGCT--------------------------G-CCGT-TTGCAGTCTATGTGCCCAAGCGGATCAACCTGGCGATAATGCTCTTTATGGCCTGC
droEle1 scf7180000491215:502225-502632 + AGCCACC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCATGCTGTAAGTATC---CAAAA---------ATCC-------------------------------------------AA--ATATAT----A---CT-CCACA-----------------------------CGAGTCATGTGCGAATAATGTCCCATCAATATCAATAAC-GACTCACGTGAT---CTTCG--------------C----TCGGCGGTGTGAAA--------TCC---------CC----TTA------------AA-----TTC--GTATC-GAA-CTCAAACATTGAAAT----------------TCGCGCATGCGCAGTCCATTAGAGATC-------------TGTGA------CCCGC------------------T----------------GAAAC-----GGGAA---------TT--GGGATCTT-------------TTT-------TCGATC---CGCTAATTACCCTAATG-TGC-GGC-GAGGGGCCTGTGCCTGTGCTTCT--ATCGA-AAATTGAATAATGGATC-------CG-T---------------CAATAACCAATATTTGCT--------------------------G-TCGT-TCGCAGTCTATGTGCCGAAGCGCGTCAATCTGGCCATCATGCTCTTCATGGCCTGC
droRho1 scf7180000779957:349642-350063 + AGGCACC--C---GGA---GTCATAATAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CAAAT---------ATTCAAA--------------------TAA---------------------TAATAT----A---TTGCCACACGC------TCGAAATCGCCCCAAGCACACGAGTCATCAGCGAAAAATGTCTCATCAATA------AC-ACCTCACGTGAT---CTTCG--------------A----TCGGCGAAGTGAAG--------TCC---------CC----CA-------------AT------TT--GTATC-GAT-CGCAAATATTGAAAT----------------TCGCGCATGCGCAGTCCATTAGAGATC-------------TGTGA------CCCGC------------------C--------CC------AAAAC-----GGGAA---------TA--GAGATCTT-------------TTC--------CGATC---CGCTAATTGCCCTAATG-TGC-TGC-GAGGGGCCTGTAC---------T--ATCGA-AAATTGAATAA-CGATC-------TG-T-----------CA--CAATAACCAATATTTGCT--------------------------G-TCGT-TCGCAGTTTATGTGCCCAAGCGGATCAACCTGGCGATCATGCTCTTCATGGCCTGC
droFic1 scf7180000454039:1424506-1424917 - AGGCACC------GGA---GCCATTAAAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CGAA---------------------------------------------------------------AAAT----A---TTGCCAAACTC------TCGGATTTGCCCGGAGCTCACGAGTCATATGCAAAAAATGTCCCATTAATA------AC-ATCTCACGTGAT---CTCCG--------------T----TCGGCGAAGTGAAG--------TCC---------CC----GA--------------------ATT--ATATC-GAT-CTCAAATATTGAAAT----------------TCGCGCATGCGCAGCCCATTAGAGATC-------------TGTGA------CCCGC------------------C--------CC--------AAC-----GGGAA---------TA--GATATATA--------------TC--------CAGAC---CGCTAATTGCTCTAATG-TGC-TGC-GAGGGGCCTGTGCC-----------ATCGA-AAATCGAATAA-CAACC-------TG-TCAATAA-----CTGTCCATGATCAATATTTGCT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGCGGATCAACGTGGCGATCATGCTCTTCATGGCCTGC
droKik1 scf7180000302228:92858-93271 + CGGCAAC--C---GGA---GCCACAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACTCTCCACCT--------------------------------------C--------C--------AA--AAATGT----A---TTGCCACACGCTCGGTCGGGGATTCGCC------------------------AAATATCTTATGAATA------AC-GCCTCACGTGAT---CTCCGCGT-----TC----ACCGTTCGGCGAGGTGAAA--------TCC---------CC--C-GTA-------------A-----ATC--AAATC-GAT-CACAAATATTGAAAT----------------TTGCGCATGCGCGGCCCATTAGAGATC-------------TGAGTCAGGTGCCCGC------------------G--------CC---------AC------GGAA---------TAAAGAGATCTA------------TCTGGAGATTTTCGATC---CGCTAATTGGCCTAATC-TAC-TGC-GAGGGGCCTGTGCC-----------------------------TGATCCCATCTTTG-T---------------CAATAACCAATATTTACT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGCGGATCAACGTGGCTATTATGCTCTTTATGGCCTGC
droAna3 scaffold_13266:9206262-9206677 + TGCCACCGGC---GGA---CCCATAACAA-AAGCCTCCAAAATGGCCTTCATGCCGTGCTGTAAGTATC---CGAATCCA------------T--------------------CTCCGGTTCGCG--------GA----ATAT----A---TTGCCACAG--------------TCGGTCGGAGC--ACGAGTCATGAG--------------TCCATA------AA-GCCTCACGTGAG----------------------A----T-GTCGAAGTGAAA--------TCCC--AAATACCC--C-GAAA-----------AA-----ATTCAATATCCGAACTGCAAATATTGAAAT----------------TCGCGCATGCGCAACCCATTAGTAATTTAATTTCGAGTCCCCAGT-------CAGT------------------C--------CCCC---------------AGAA---------TA--GAGATCT-----------------------------C---CGCTAATTACTCTAATA-ATT-CGA-GAGGGGCCTGTGCC------CC---TTCGA-AATCTGAATAAATGATC-------TG-T---------------CAATAATAAATATTTACT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGAGGGTCAACTTGGCCATCATGCTGTTCATGGCTTGT
droBip1 scf7180000396427:352895-353328 + TGCCACC------GGA---CCCATAACAA-AAGCCTCCAAAATGGCCTTCATGCCGTGCTGTAAGTATC---CGAATCCA------------T--------------------CTCCGGTTCGCG--------GA--ATATAT----A---TTGCCACACGC------TCGAATTCGCTCGGAGC--ACGAGTCATA--------------CATCCATA------AA-GCCTCACGTGAG---CTGT-------TGTGCTGGA----T-GTCGAAGTGAAA--------TCCC--AAATACCC--CCGAA------------AAAT---ATT--ATATCCGAACTGCAAATATTGAAAT----------------TTGCGCATGCGCAACCCATTAGTAATTTAATTT-------TGAGTCAGG---CAGT------------------C--------CCC---------C-----TGGAA---------TA--GAGATCT-----------------------------C---CGCTAATTACTCTAATA-ATC-TGA-GAGGGGCCTGTGCC------GCG--TTCGA-ATTCCAAATAAATGATC-------TG-T---------------CAATAATAAATATTTATT--------------------------G-TCGT-TTTCAGTCTATGTGCCCAAGCGGGTCAACGTGGCCATCATGCTGTTCATGGCCTGT
dp5 3:9156598-9157048 + AGGCACAAAA---AAG---GCCATAAGAA-AACAAGCCGAAATGGCCGTCATTCCGTGCTGTAAGTATC---CCAAGCCA------------A--------------------TAACCGAGCGAC--------AA----AAAT----A---TTGCTACACGT------TTTGATTCCGCGGAAGCACACGATTCATATGCGC-ATATGTCTCATCAATAACAC-TTC-ACTTCACGTGAT---GTG-G--------------AT---CCAGCGAAGTGAAG--------TC-A--AAATACCC--C-GAA-------------A-----ATC-----CC-AAT-CGCAAATATTGAAAG----------------TTGCGCATGCGCAGCGCATTAGATTGC-------------TTCGTCAGGT----------GAAACA--------GACACAAACACAC---------------ATAG---------TA--GATATCTT-------------ATA--------TGATC---CGCTAATTGCTCTAATG-CGC-TGC-TAGGGGCCTGTGCC------GAA--ATTGA-AAATTAAATAA-TGATC-------TG-T---------------CAATAAACAATATTTGGT--------------------------G-TCGTTTTGCAGTCTATGTGCCCAAGCGGATCAATGTGGCGATTATGCTCTTCATGGCCTGC
droPer2 scaffold_4:4479910-4480360 + AGGCACAAAA---GAG---GCCATAAGAA-AACAAGCCGAAATGGCCGTCATTCCGTGCTGTAAGTATC---CCAAGCCA------------A--------------------TAACCGAACGAC--------AA----AAAT----A---TTGCTACACGT------TTTGATTCCGCGGAAGCACACGATTCATATGCGC-ATATGTCTCATCAATAACAA-TTC-ACTTCACGTGAT---GTG-G--------------AT---CCAGCGAAGTGAAG--------TC-A--AAATACCC--C-GAA-------------A-----ATC-----CC-AAT-CGCAAATATTGAAAG----------------TTGCGCATGCGCAGCTCATTAGATTGC-------------TTCGTCAGGT----------GAAACA--------GACACAAACACAC---------------ATAG---------TA--GATATCTT-------------ATA--------TGATC---CGCTAATTGCTCTAATG-CGC-TGC-TAGGGGCCTGTGCC------GAA--ATTGA-AAATTAAATAA-TGATC-------TG-T---------------CAATAAACAATATTTGGT--------------------------G-TCGTTTTGCAGTCTATGTGCCCAAGCGGATCAATGTGGCGATTATGCTCTTCATGGCCTGC
droWil2 scf2_1100000004514:2662633-2663163 - AGAAAACGAAATCGAA--ATCCATAATAAAAAGCTGCCAAAATGGCCTTCATGCCGTGTTGTAAGTATT---AGTAT---------ATCCCAAACTTAAATTATCGAAAACCTCTCATTTCAGTGGAATCAAC-------AAC----ATCA------------------------------------ACGA--CAACGACAAAAAATGCCATATAAATA-------A-ATTTCACGTGAT---GCTCCACCAATTATG----ACCAATCG-C-AAATGAAA--------TCC---------CC----GAA-------------A-----A-----TAAC-AAT-CTCAAATATTAAAAAAACAAACCTGCTGCTGCTGAGCATGCGCCGTTTATTACCGATCAAAG---------TTTGT------CATGATCATGAAACGAGGCGTGGG--------GC------AAATTCTCTTTGCAATAGATGTAGT----AGATCTTTATATAGCCATTTGTA--------TAATT---TGCTAATTGCTCTAATG-TGC-TGC-GAGGGGCTCGAATC------GCAAAAATAA-AAATTAA--------AC-------TA-TCAATAATGATTTCGCAAATAATCAATATTTATTGTCAATTA-------------TTTTCGTTTGT-TTGCAGTCTATGTTCCCAAGCGGATCAATGTGGCTATAATGTTGTTTATGGCCTGC
droVir3 scaffold_12875:3344905-3345262 + dvi_5124 CAAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTAATAAATA-------A-ATTTCACGTGATGCTGTTCG--------------T-CAGTCAAAAATCTGAAA--------TAC---------CC--G-AA-------------AA-----ATG-----AA-AAA-ATTAAATATTGCGGC----------------TTACGCATGCGCCGTTAATTAGACACC-------------TG--A------CGGGC------------------C--------CC------AAATT-----GCAAA---------CG--GAGCTCAA---GTTGACATATCTA--------AGATTTAACGCTAATTGCTCTAATG-CGCATGG-CAAACGCTAG--CCGGAATAGAA--GTTTATAAATAGATAGA-TGATG-------GAAAAAAAAAGGAGTTAGCAAATAAACAA---TTACTCTCAATTAATATACAATATTGTTTTTG-TCGC-TTGCAGTTTATGTGCCAAAGCGCGTGAATGTGGCCATAATGTTGTTCATGATGTGC
droMoj3 scaffold_6496:21798970-21799149 - CGGCACAGCA---ATAAAGGC---AACAATAATCCGGCAAAATGGCTGTTATCCCCTTCTGTAAGTAAA---CACAA---------ATTAAA---------------------CA-------------------CACGAATAT----A-----------TGC----------A---ATCCAA---------------------------------AATA-------A-GATTCACGTGC----------------------------------------------------------------------AAAAAATTATCTGAC--TTAATG-----AA-ACG-CTTCAATATTGAGCG----------------TTACGCAGGCGCCGTTCATTAGAGGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15112:2801406-2801604 - GC--A----------------------AC-AAGCTACCAAAATGGCTGTTATACCCTGCTGTAAGTATT---ATTTC---TGTATTAAGCAAA--------------------AAATAAGA-------------------------------AGAAACAAAT------TAG------------------------------------GCGCAGTAAAT-------AA-ATCTCACGTGAT---TTTGCTGTAAT---------GC-GTCAGC-AAATAAAT--------TCC---------CC--C-CAAA-----------AA-----ATG-----GA-ATA-ATTAAATATTGAAAG----------------TTACGCGTGCGCCGTTCATTAAACACC-------------TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
AGGCAAC------GAA---GTCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CAAA---------------------------------------------------------------ATAT----ATTATGGCCACACGC------TCGAAATT-------------------------------G--TCGTCAATA------AG-GCCTCACGTGATGATCTTCG--------------A----TCGGAGCACCGACA--------TCCCCGAAATACC------------------------------------C-GA----CAAATATTGAGAT----------------TTGCGCATGCGCAGCCCATTAGAGATC-------------TGTGA------CCCGT------------------C--------CCCCA--AAAAAC-----GGGAA---------TGGGGAGATCTT--------------TC--------CGATT---CGCTAATTGATCTAATG-TGC-TGC-GAGAGGCCTG--CCTGTACCTCT--GTTTATGAATTGAATAA-CGATC-------CG-T-----------TGGTCAATAATCAATATTTGCT--------------------------G-TCGT-TTGCAGTCTATGTGCCCAAGCGGATTAACGTGGCTATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-TGC-GAGAGGCCTG--CCTG.....................................................................................................................................................................1811.00110000000000000000
...........................................GGCCTTCATGCCGTGCTGTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................GT------------------C--------CCCCA--AAAAAC-----GGGAA---------TGGGGA.....................................................................................................................................................................................................................................................2511.00100010000000000000
........................................................................................................................................................................................................................ATA------AG-GCCTCACGTGATGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100001000000000000
droSec2
AGGCAAC------GAA---GTCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAA---------------------------------------------------------------ATAT----ATTATGGCCACACGC------TCGGAATT-------------------------------G--TCGTCAATA------AG-GCCTCACGTGATGATCTTCG--------------A----TCGG---AGCGGAGCACCGACATCCCCGAAATCCCC----G--------------AC-----ATG--TTATC-CAC-CACAAATATTGAGAT----------------TTGCGCACGCGCAGCCCATTAGAGATC-------------TGTGA------CCCGT------------------C--------CCCCA--AAAAAC-----GGGAA---------TGGGGAGATCTT--------------TC--------CGATT---CGCTAATTGATCTAATG-TGC-TGC-GAGAGGCCTG--CCTGTACCTCT--GTTTATGAATTTAATAA-CGATC-------CG-T-----------TGGTCAATAATCAATATTTGCT--------------------------G-TCGT-TTGCAGTCTATGTGCCCAAGCGGATTAACGTGGCGATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...CAAC------GAA---GTCATAACAA-AAGCCGCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2720.5011000
.......................................................................................................................................................................................................................AATA------AG-GCCTCACGTGATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTGCCCAAGCGGATTAACGTGGC......................2420.5010100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCCAAGCGGATTAACGTGGC......................2220.5011000
....AAC------GAA---GTCATAACAA-AAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2020.5011000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTATGTGCCCAAGCGGATTAACGTGGC......................2820.5010100
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGCCCAAGCGGATTAACGTGGC......................2720.5010100
dm3
AGGCTAC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAA----------------------------------------------------------------TAT----ATTATGGCCACACGC------TCGGAATT-------------------------------G--TCGTCAATA------AG-GCCTCACGTGATGATCTTCG--------------A----TCGGAGCACCGACA--------TCCCCGAAATCCCC----G--------------AC-----ATG--ATATC-CAT-CACAAATATTGAAAT----------------TTGCGCATGCGCAGCCCATTAGAAATC-------------TGTGA------CCCGT------------------C--------CCCAAAAAAAAAC-----GGGAA---------TGGGGAGATCTT--------------TT--------CGATC---CGCTAATTGATCTAACG-TGT-TGC-GAGGGGCCTG--CCTGTACCTCT--ATTCATAAATTGAATAA-CGATC-------CG-T-----------TGGTCAATAATCAATATTTGCT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGCGGATTAACCTGGCGATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGATTAACCTGGCGATCATGCTCT...........2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCTGGCGATCATGCT.............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTGCT--------------------------G-TCGT-TCGCAG..................................................1811.0010000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATCAATATTTGCT--------------------------G-TCGT-........................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATATTTGCT--------------------------G-TCGT-TCGCAG..................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGGATTAACCTGGCGATCATGCTCTT..........3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTAACCTGGCGATCATGCTC............2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCTGGCGATCATGCTCTTCATGGCC...2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............A---GCCATAACAA-AAGCCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAACCTGGCGATCATGCTCTT..........2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................TATGGCCACACGC------TCGGAATT-------------------------------G--TCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTTGCT--------------------------G-TCGT-TCGCAG..................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAATATTTGCT--------------------------G-TCGT-TCGCAG..................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
...........................................................................................................................................................................................................................................GTGATGATCTTCG--------------A----TCGGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCGGATTAACCTGGCGATC..................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................AT-CACAAATATTGAAAT----------------TTGCGC........................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGGATTAACCTGGC......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......C------GGA---GCCATAACAA-AAGCCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAACCTGGCGATCATGCTCTTCATG......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGATTAACCTGGCGATCATG...............2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAATATTTGCT--------------------------G-TCGT-TCGCAG..................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................................................................................................................................................ACGC------TCGGAATT-------------------------------G--TCGTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGATCATGCTCTTCATGG.....1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---------TGGGGAGATCTT--------------TT--------CGAT...................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCATGCTCTTCATGGCCTG.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATTTGCT--------------------------G-TCGT-TCGCAG..................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTAACCTGGCGATCATG...............1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCGATCATGCTCTTCATGGC....2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...........................................GGCCTTCATGCCGTGCTT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1820.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
AGGCAAC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAAT---------A-------------------------------------------------------CATATATCATTGCCACACGC-------------------------------------------------CGTCAAAA------AC-GCCTCACGTGAT---CTTCC--------------A----T-TTCGCACCGAGA--------TCC---------CC----GAAA-----------TGAT---ATG--ATATC-CAG-CGCAAATATTGAAAT----------------TTGCCCATGCGCAGCCCATTAGAGAGC-------------TACGA------CCCAG------------------C--------CC-----AAAAAC-----GGGAA---------TG--GAGATCTT--------------TC--------CGATC---CGCTAATTGATCTAATGATGC-TGCCGAGGGGCCTGTTCG------GAT--ATCAA-AAATTAAATAA-CGATC-------TG-T---------------CAATAATCAATATTTGCT--------------------------G-TCGT-TTGCAGTCTATGTCCCCAAGCGGATTAACCTGGCGATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
....AAC------GGA---GCCATAACAA-AAGCCGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
droYak3
AGGCAAC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CAAAT---------ATAC-----------------------A--------------------T--------ACGTATTATTGCCACACGC-------------------------------------------------CATCAATAACGA-TTCAGCCTCACGTGAT---CTTCG--------------A----TCCGCGCATCGAAA--------TTC---AAATCCAAATC-C--------------AA-----ATG--ATATC-CAG-CTCAAATATTGAGAT----------------TTGCCCATGCGCTGCCCATTAGAGAGC-------------TGCGA------CATGG------------------C--------CC-----AAAAAC-----GGGAA---------GA--GAGATCTT--------------TC--------CGATT---CGCTAATTGAGCTAATGATGC-TGC-GAGGGGCCTGTGTG------GAT--ATCGA-AAATTGAATAA-TGATC-------TG-T---------------CAATAATCAATATTTACT--------------------------G-TCGT-TTGCAGTCTATGTGCCCAAGCGGATCAACCTGGCGATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGCCCAAGCGGATCAACCTGGCG.....................2811.00101000000000
.................................................CATGCCGTGCTGTAAGTACC---CA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCTGGCGATCATGCTCTTC.........2211.00100100000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAGCGGATCAACCTGGCGAT...................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACCTGGCGATCATGCT.............2011.00100000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGCGGATCAACCTGGCGATC..................2211.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTATGTGCCCAAGCGGATC..............................1911.00101000000000
droEug1
AGGCACC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CACTT-----------------------------------------GAAC-----------GA--GTATAT----A---TTGCCACACACACACTTTCGGATTCACCAGAAGC--ACGAGTCATGAGCGAAAAATGTCCCATCAATA------AC-ACCTCACGTGCT---CTTCG--------------A----TCGGCCAAGTGAAA--------ACC---------CC----GAAA-----------AAAT---ATT--GTTTC-GAA-TTCAAATATTGAAAT----------------TTGCGCATGCGCAACCCATTAGAGATC-------------TCCGA------CCCGC------------------C--------C-------AAAAC-----GGGAA---------TT--GGGATCTT--------------GC--------CGATC---CGCTAATTGAACTAATG-GGC-TGC-TAGGGGCCTGTGTC------GCT--ATCGA-AAATTGAATAA-CGATC-------TG-T---------------CAATAACCAATATTTACT--------------------------G-TCGT-TTGCAGTCTATGTGCCTAAGCGGATCAACCTGGCGATCATGCTCTTCATGGCCTGTSizeHit CountTotal NormTotal
No Reads
droBia1
AGGCAGC------GGA---GCCATAACAA-AAGCCTCCGAGATGGCCTTCATGCCGTGCTGTAAGTACC---AAAA----------------------------------------------------------------TGTATTTATTATTGCCACACGC------TCGGAATCGCCCGCAGC--ACGAGTCAT--GCGAAAAATGTCCCATCAATA------AC-GCCTCACGTGAT---CTTCG--------------A----TCCGCGAAGTGAAC--------CCC---------------CA-------------AA-----ATG--AAATC-GAG-CTCAAATATTGGAAT----------------TTGCGCATGCGCAGCCCATTAGAGATC---------------------------------------------------------------------------------------------AGGTCTT--------------TC--------CGATC---CGCTAATTGAGCTAATG-GGC-TGC-GAGGGGCCTGTGCC------GCC--ATCGA-AAACAGAATAT-CCACC-------TG-T---------------CAATAACCAATATTTGCT--------------------------G-TCGC-TCGCAGTCTATGTGCCCAAGCGGGTCAACCTGGCCATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotal
No Reads
droTak1
AGGCTCC------CGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CAAA---------------------------------------------------------------ATATATTTATTATTGCCACACGC------TCGGATTCGCTTGAAGT--TCGAGTCATGAGCGAAAAATGTCCCATCAATAACGA-AAC-GCCTCACGTGAT---CTTCG--------------A----TCGGCTAAGTGAAA--------TCC---------CC----GAAA-----------AA-----ATG--ATATT-GAG-CTCAAATATTGAAAT----------------TTGCGCATGCGCAGCCCATTAGAGATC-------------TGCGA------CCCGC------------------C--------CC--------AAC-----GGGAA---------TA--GAGATCTT--------------TC--------CGATC---CGCTAATTGAGCTAATG-TGC-TGC-GAGGGGCCTGTGCC------GCT--ATCGA-AAATTGAGTAA-CGATC-------TG-T---------------CAATAACCAATATTTGCT--------------------------G-CCGT-TTGCAGTCTATGTGCCCAAGCGGATCAACCTGGCGATAATGCTCTTTATGGCCTGCSizeHit CountTotal NormTotal
No Reads
droEle1
AGCCACC------GGA---GCCATAACAA-AAGCCGCCGAAATGGCCTTCATGCCATGCTGTAAGTATC---CAAAA---------ATCC-------------------------------------------AA--ATATAT----A---CT-CCACA-----------------------------CGAGTCATGTGCGAATAATGTCCCATCAATATCAATAAC-GACTCACGTGAT---CTTCG--------------C----TCGGCGGTGTGAAA--------TCC---------CC----TTA------------AA-----TTC--GTATC-GAA-CTCAAACATTGAAAT----------------TCGCGCATGCGCAGTCCATTAGAGATC-------------TGTGA------CCCGC------------------T----------------GAAAC-----GGGAA---------TT--GGGATCTT-------------TTT-------TCGATC---CGCTAATTACCCTAATG-TGC-GGC-GAGGGGCCTGTGCCTGTGCTTCT--ATCGA-AAATTGAATAATGGATC-------CG-T---------------CAATAACCAATATTTGCT--------------------------G-TCGT-TCGCAGTCTATGTGCCGAAGCGCGTCAATCTGGCCATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotal
No Reads
droRho1
AGGCACC--C---GGA---GTCATAATAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTATC---CAAAT---------ATTCAAA--------------------TAA---------------------TAATAT----A---TTGCCACACGC------TCGAAATCGCCCCAAGCACACGAGTCATCAGCGAAAAATGTCTCATCAATA------AC-ACCTCACGTGAT---CTTCG--------------A----TCGGCGAAGTGAAG--------TCC---------CC----CA-------------AT------TT--GTATC-GAT-CGCAAATATTGAAAT----------------TCGCGCATGCGCAGTCCATTAGAGATC-------------TGTGA------CCCGC------------------C--------CC------AAAAC-----GGGAA---------TA--GAGATCTT-------------TTC--------CGATC---CGCTAATTGCCCTAATG-TGC-TGC-GAGGGGCCTGTAC---------T--ATCGA-AAATTGAATAA-CGATC-------TG-T-----------CA--CAATAACCAATATTTGCT--------------------------G-TCGT-TCGCAGTTTATGTGCCCAAGCGGATCAACCTGGCGATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotal
No Reads
droFic1
AGGCACC------GGA---GCCATTAAAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACC---CGAA---------------------------------------------------------------AAAT----A---TTGCCAAACTC------TCGGATTTGCCCGGAGCTCACGAGTCATATGCAAAAAATGTCCCATTAATA------AC-ATCTCACGTGAT---CTCCG--------------T----TCGGCGAAGTGAAG--------TCC---------CC----GA--------------------ATT--ATATC-GAT-CTCAAATATTGAAAT----------------TCGCGCATGCGCAGCCCATTAGAGATC-------------TGTGA------CCCGC------------------C--------CC--------AAC-----GGGAA---------TA--GATATATA--------------TC--------CAGAC---CGCTAATTGCTCTAATG-TGC-TGC-GAGGGGCCTGTGCC-----------ATCGA-AAATCGAATAA-CAACC-------TG-TCAATAA-----CTGTCCATGATCAATATTTGCT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGCGGATCAACGTGGCGATCATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotal
No Reads
droKik1
CGGCAAC--C---GGA---GCCACAACAA-AAGCCGCCGAAATGGCCTTCATGCCGTGCTGTAAGTACTCTCCACCT--------------------------------------C--------C--------AA--AAATGT----A---TTGCCACACGCTCGGTCGGGGATTCGCC------------------------AAATATCTTATGAATA------AC-GCCTCACGTGAT---CTCCGCGT-----TC----ACCGTTCGGCGAGGTGAAA--------TCC---------CC--C-GTA-------------A-----ATC--AAATC-GAT-CACAAATATTGAAAT----------------TTGCGCATGCGCGGCCCATTAGAGATC-------------TGAGTCAGGTGCCCGC------------------G--------CC---------AC------GGAA---------TAAAGAGATCTA------------TCTGGAGATTTTCGATC---CGCTAATTGGCCTAATC-TAC-TGC-GAGGGGCCTGTGCC-----------------------------TGATCCCATCTTTG-T---------------CAATAACCAATATTTACT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGCGGATCAACGTGGCTATTATGCTCTTTATGGCCTGCSizeHit CountTotal NormTotal
No Reads
droAna3
TGCCACCGGC---GGA---CCCATAACAA-AAGCCTCCAAAATGGCCTTCATGCCGTGCTGTAAGTATC---CGAATCCA------------T--------------------CTCCGGTTCGCG--------GA----ATAT----A---TTGCCACAG--------------TCGGTCGGAGC--ACGAGTCATGAG--------------TCCATA------AA-GCCTCACGTGAG----------------------A----T-GTCGAAGTGAAA--------TCCC--AAATACCC--C-GAAA-----------AA-----ATTCAATATCCGAACTGCAAATATTGAAAT----------------TCGCGCATGCGCAACCCATTAGTAATTTAATTTCGAGTCCCCAGT-------CAGT------------------C--------CCCC---------------AGAA---------TA--GAGATCT-----------------------------C---CGCTAATTACTCTAATA-ATT-CGA-GAGGGGCCTGTGCC------CC---TTCGA-AATCTGAATAAATGATC-------TG-T---------------CAATAATAAATATTTACT--------------------------G-TCGT-TCGCAGTCTATGTGCCCAAGAGGGTCAACTTGGCCATCATGCTGTTCATGGCTTGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
.................................CCTCCAAAATGGCCTTCATGCCGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001100000
droBip1
TGCCACC------GGA---CCCATAACAA-AAGCCTCCAAAATGGCCTTCATGCCGTGCTGTAAGTATC---CGAATCCA------------T--------------------CTCCGGTTCGCG--------GA--ATATAT----A---TTGCCACACGC------TCGAATTCGCTCGGAGC--ACGAGTCATA--------------CATCCATA------AA-GCCTCACGTGAG---CTGT-------TGTGCTGGA----T-GTCGAAGTGAAA--------TCCC--AAATACCC--CCGAA------------AAAT---ATT--ATATCCGAACTGCAAATATTGAAAT----------------TTGCGCATGCGCAACCCATTAGTAATTTAATTT-------TGAGTCAGG---CAGT------------------C--------CCC---------C-----TGGAA---------TA--GAGATCT-----------------------------C---CGCTAATTACTCTAATA-ATC-TGA-GAGGGGCCTGTGCC------GCG--TTCGA-ATTCCAAATAAATGATC-------TG-T---------------CAATAATAAATATTTATT--------------------------G-TCGT-TTTCAGTCTATGTGCCCAAGCGGGTCAACGTGGCCATCATGCTGTTCATGGCCTGTSizeHit CountTotal NormTotal
No Reads
dp5
AGGCACAAAA---AAG---GCCATAAGAA-AACAAGCCGAAATGGCCGTCATTCCGTGCTGTAAGTATC---CCAAGCCA------------A--------------------TAACCGAGCGAC--------AA----AAAT----A---TTGCTACACGT------TTTGATTCCGCGGAAGCACACGATTCATATGCGC-ATATGTCTCATCAATAACAC-TTC-ACTTCACGTGAT---GTG-G--------------AT---CCAGCGAAGTGAAG--------TC-A--AAATACCC--C-GAA-------------A-----ATC-----CC-AAT-CGCAAATATTGAAAG----------------TTGCGCATGCGCAGCGCATTAGATTGC-------------TTCGTCAGGT----------GAAACA--------GACACAAACACAC---------------ATAG---------TA--GATATCTT-------------ATA--------TGATC---CGCTAATTGCTCTAATG-CGC-TGC-TAGGGGCCTGTGCC------GAA--ATTGA-AAATTAAATAA-TGATC-------TG-T---------------CAATAAACAATATTTGGT--------------------------G-TCGTTTTGCAGTCTATGTGCCCAAGCGGATCAATGTGGCGATTATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATGTGGCGATTATGCTCTTCATGGCC...2711.0010100000000
...................GCCATAAGAA-AACAAGCCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000000
......................ATAAGAA-AACAAGCCGAAATGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGCGGATCAATGTGGCG.....................2111.0010100000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTATGCTCTTCATGGCCTGC2111.0010100000000
droPer2
AGGCACAAAA---GAG---GCCATAAGAA-AACAAGCCGAAATGGCCGTCATTCCGTGCTGTAAGTATC---CCAAGCCA------------A--------------------TAACCGAACGAC--------AA----AAAT----A---TTGCTACACGT------TTTGATTCCGCGGAAGCACACGATTCATATGCGC-ATATGTCTCATCAATAACAA-TTC-ACTTCACGTGAT---GTG-G--------------AT---CCAGCGAAGTGAAG--------TC-A--AAATACCC--C-GAA-------------A-----ATC-----CC-AAT-CGCAAATATTGAAAG----------------TTGCGCATGCGCAGCTCATTAGATTGC-------------TTCGTCAGGT----------GAAACA--------GACACAAACACAC---------------ATAG---------TA--GATATCTT-------------ATA--------TGATC---CGCTAATTGCTCTAATG-CGC-TGC-TAGGGGCCTGTGCC------GAA--ATTGA-AAATTAAATAA-TGATC-------TG-T---------------CAATAAACAATATTTGGT--------------------------G-TCGTTTTGCAGTCTATGTGCCCAAGCGGATCAATGTGGCGATTATGCTCTTCATGGCCTGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................ATGCGCAGCTCATTAGATTG....................................................................................................................................................................................................................................................................................................................................................2012.002200000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCAAGCGGATCAATGT.........................2011.001010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAGCGGATCAATGTG........................1911.001000001
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGCCCAAGCGGATCAATGTGGCGATT..................2711.001010000
droWil2
AGAAAACGAAATCGAA--ATCCATAATAAAAAGCTGCCAAAATGGCCTTCATGCCGTGTTGTAAGTATT---AGTAT---------ATCCCAAACTTAAATTATCGAAAACCTCTCATTTCAGTGGAATCAAC-------AAC----ATCA------------------------------------ACGA--CAACGACAAAAAATGCCATATAAATA-------A-ATTTCACGTGAT---GCTCCACCAATTATG----ACCAATCG-C-AAATGAAA--------TCC---------CC----GAA-------------A-----A-----TAAC-AAT-CTCAAATATTAAAAAAACAAACCTGCTGCTGCTGAGCATGCGCCGTTTATTACCGATCAAAG---------TTTGT------CATGATCATGAAACGAGGCGTGGG--------GC------AAATTCTCTTTGCAATAGATGTAGT----AGATCTTTATATAGCCATTTGTA--------TAATT---TGCTAATTGCTCTAATG-TGC-TGC-GAGGGGCTCGAATC------GCAAAAATAA-AAATTAA--------AC-------TA-TCAATAATGATTTCGCAAATAATCAATATTTATTGTCAATTA-------------TTTTCGTTTGT-TTGCAGTCTATGTTCCCAAGCGGATCAATGTGGCTATAATGTTGTTTATGGCCTGCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAGCGGATCAATGTGGC......................2011.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGCTATAATGTTGTT..........1911.00100010
..........ATCGAA--ATCCATAATAAAAAGCTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
droVir3
CAAAATT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCTAATAAATA-------A-ATTTCACGTGATGCTGTTCG--------------T-CAGTCAAAAATCTGAAA--------TAC---------CC--G-AA-------------AA-----ATG-----AA-AAA-ATTAAATATTGCGGC----------------TTACGCATGCGCCGTTAATTAGACACC-------------TG--A------CGGGC------------------C--------CC------AAATT-----GCAAA---------CG--GAGCTCAA---GTTGACATATCTA--------AGATTTAACGCTAATTGCTCTAATG-CGCATGG-CAAACGCTAG--CCGGAATAGAA--GTTTATAAATAGATAGA-TGATG-------GAAAAAAAAAGGAGTTAGCAAATAAACAA---TTACTCTCAATTAATATACAATATTGTTTTTG-TCGC-TTGCAGTTTATGTGCCAAAGCGCGTGAATGTGGCCATAATGTTGTTCATGATGTGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCATAATGTTGTTCATGATGT..2311.001001000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGTGGCCATAATGTTGTTCATGATGT..2711.001000001000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGATAGA-TGATG-------GA............................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGTTAGCAAATA......................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTA--------AGATTTAACGCTAAT........................................................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGCGCGTGAATGTGGCCATAATG...............2711.001001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGAATGTGGCCATAATGTT.............2311.001001000000000000000000000000000000000000000000000000000000000000
droMoj3
CGGCACAGCA---ATAAAGGC---AACAATAATCCGGCAAAATGGCTGTTATCCCCTTCTGTAAGTAAA---CACAA---------ATTAAA---------------------CA-------------------CACGAATAT----A-----------TGC----------A---ATCCAA---------------------------------AATA-------A-GATTCACGTGC----------------------------------------------------------------------AAAAAATTATCTGAC--TTAATG-----AA-ACG-CTTCAATATTGAGCG----------------TTACGCAGGCGCCGTTCATTAGAGGCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................AATAATCCGGCAAAATGGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000001
droGri2
GC--A----------------------AC-AAGCTACCAAAATGGCTGTTATACCCTGCTGTAAGTATT---ATTTC---TGTATTAAGCAAA--------------------AAATAAGA-------------------------------AGAAACAAAT------TAG------------------------------------GCGCAGTAAAT-------AA-ATCTCACGTGAT---TTTGCTGTAAT---------GC-GTCAGC-AAATAAAT--------TCC---------CC--C-CAAA-----------AA-----ATG-----GA-ATA-ATTAAATATTGAAAG----------------TTACGCGTGCGCCGTTCATTAAACACC-------------TG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 11:07 PM