ID:

dsi_25128

Coordinate:

3l:8053059-8053143 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]

Legend:

mature

star

mismatch in read

Predicted structure

Flybase annnotation

intergenic

No Repeatable elements found

Sense Strand Reads

CCCTTTACGGCCGAGAAGTACCGCCACGAGGTGCATGCCACCGTCTACAGGTGAGATAGCTGGGATCGAGTCGGATCGGATCCAACTCCGCCCATCCCGGATTGATTGTTAATCCTTTGTCCTTTAAACCGGCAGATGCAAACTGCGCAATTTGGTGGGCACCGTGCTCAGCCGAGAGGTTCACG ************************************************..........((((...((((.((((...)))).))))..))))..((((.((((....(((....)))....)))).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M023 head	SRR618934 dsim w501 ovaries	M024 male body	SRR553488 RT_0-2 hours eggs
................................GCATGCCACCGTCTACAG.......................................................................................................................................	18	0	1	1.00	1	1	0	0	0
........GGCCGAGAAGTACCGC.................................................................................................................................................................	16	0	2	0.50	1	0	1	0	0
...........................................................CTGGGGTTGAGTCGGATC............................................................................................................	18	2	5	0.20	1	0	0	1	0
..........................................................................................................................................................GTGGGCCTCGTGCTCAG..............	17	2	13	0.08	1	0	1	0	0
........................................................................................CGCCGATCCCGGAATG.................................................................................	16	2	20	0.05	1	0	0	0	1

Anti-sense strand reads

GGGAAATGCCGGCTCTTCATGGCGGTGCTCCACGTACGGTGGCAGATGTCCACTCTATCGACCCTAGCTCAGCCTAGCCTAGGTTGAGGCGGGTAGGGCCTAACTAACAATTAGGAAACAGGAAATTTGGCCGTCTACGTTTGACGCGTTAAACCACCCGTGGCACGAGTCGGCTCTCCAAGTGC ************************************************..........((((...((((.((((...)))).))))..))))..((((.((((....(((....)))....)))).))))...************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	SRR553488 RT_0-2 hours eggs	SRR618934 dsim w501 ovaries	O001 Testis	GSM343915 embryo	M023 head	SRR902009 testis
....................................................................................................................................................................AAGAGTCGGCTCTCCAAGG..	19	2	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................TGGCACGAGTCGGCTCTC.......	18	0	1	1.00	1	0	0	1	0	0	0
..........GGCTCTTCATGGCGGCGCTTC..........................................................................................................................................................	21	2	1	1.00	1	1	0	0	0	0	0
..................................................................................GTTACGGCAGGTAGGGCCTA...................................................................................	20	3	6	0.17	1	0	0	0	1	0	0
............................ACCAAGTAGGGTGGCAGAT..........................................................................................................................................	19	3	8	0.13	1	0	1	0	0	0	0
.............................................................................................AAGGGCCTAACTAAC.............................................................................	15	1	8	0.13	1	1	0	0	0	0	0
...........................................................................................................CAGTTAGGTAACAGCAAAT...........................................................	19	3	20	0.05	1	0	0	0	0	1	0
.............................................................................................................................................................CGCTGGCATGAGTCGGCT..........	18	3	20	0.05	1	0	0	0	0	0	1

Generated: 04/24/2015 at 10:37 AM