ID:

dsi_25116

 Coordinate:

3l:13603920-13604069 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-12.7 -12.6 -12.0 -11.9

Flybase annnotation

five_prime_UTR [3l_13603721_13603919_+]; exon [3l_13603721_13603919_+]; intron [3l_13603920_13605162_+]

No Repeatable elements found

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CGGACATCGAAAGTTCTGCTTTGGAGTGGAGCAGCGTCGTCGTGACCGAGGTTTCTGCCCTCATACATATACGGATATAGTTAGCTATATATATATATAAATAGTTTAAAAGATATATAGGGCCAGACTGTAGCGCGCTTGCGAAAGTGGAAAGTATCTGCTGGATACTTTGGATACTTTCCGTTCTGGGGGAATTAATTAGACCAATATATCCCATGCAATCCGCGCGTTATTTTTGTTGTTTTGTCAA
*************************************************************************************************************************........................((...((((((((.....)))))))).....))************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M053
female body
 M024
male body		 M025
embryo
 SRR618934
dsim w501 ovaries
 M023
head
 O002
Head
 SRR553485
Chicharo_3 day-old ovaries
 SRR553486
Makindu_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
................................................................................................................................................................................CTTTCGGTTCTGGGGGGAGTA..................................................... 21 3 1 4.00 4 4 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTTTCGGTTCTGGGGGGAGT...................................................... 20 3 6 3.00 18 18 0 0 0 0 0 0 0 0
............................GAGCAGCGTCGTCGTGACCGAGCT...................................................................................................................................................................................................... 24 1 1 2.00 2 0 2 0 0 0 0 0 0 0
........GAAAGTTCTGCTTTGGAGTGGAGC.......................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0 0 0
.........................................................................................................................GCCAGACTGTAGCGCGCTTGCG........................................................................................................... 22 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................CTTTGGGTTCTGGGGGAAGT...................................................... 20 3 10 1.00 10 10 0 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTCGGTTCTGGGGGGAGTA..................................................... 20 3 7 1.00 7 7 0 0 0 0 0 0 0 0
.....ATCGAAAGTTCTGCTTTGGAGTGGA............................................................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...........................GGAGCAGGGTCGTCGTGACCGAGCTC..................................................................................................................................................................................................... 26 3 1 1.00 1 0 1 0 0 0 0 0 0 0
...........................................................................................................................................................ATCTGCTGGATACTTTGGATACT........................................................................ 23 0 1 1.00 1 0 1 0 0 0 0 0 0 0
.............................................................................................................................................................CTGCTGGATACTTTGGATACT........................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0 0 0
...................................................................................................................................AGCGCGCTTGCGAAAGTGGAAAG................................................................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0 0 0
...........................GGAGCAGCGTCGTCGTGACCGAGCTC..................................................................................................................................................................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0 0 0
............................GAGCAGCGTCGTCGTGACCGAG........................................................................................................................................................................................................ 22 0 1 1.00 1 1 0 0 0 0 0 0 0 0
...............................CAGCGTCGTCGTGACCGAGCT...................................................................................................................................................................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0 0 0
................................................................................................................................................................................CTTTGGGTTCTGGGGGAA........................................................ 18 2 6 1.00 6 5 0 0 1 0 0 0 0 0
.............................................................................................................................................................CTGCTGGATACTTTGGATACTTTCC.................................................................... 25 0 1 1.00 1 0 0 1 0 0 0 0 0 0
...................TTTGGAGTGGAGCAGCGTCGTCGTGACC........................................................................................................................................................................................................... 28 0 1 1.00 1 0 1 0 0 0 0 0 0 0
................................................................................................................................................................................CTTTCGGTTCTGGGGGGA........................................................ 18 2 4 1.00 4 4 0 0 0 0 0 0 0 0
................................................................................................................ATATATAGGGCCAGACTG........................................................................................................................ 18 0 1 1.00 1 0 0 0 0 1 0 0 0 0
.............................................................CATACATATACGGATATAGTTAGCT.................................................................................................................................................................... 25 0 1 1.00 1 0 1 0 0 0 0 0 0 0
..................................................................................................................................................................................................................................GCGTTATTATTGGTGTTTGGT... 21 3 4 0.75 3 0 0 0 0 0 0 3 0 0
................................................................................................................................................................................CTTTGGGTTCTGGGGGGATTA..................................................... 21 3 6 0.67 4 4 0 0 0 0 0 0 0 0
..................................................................ATATCCGGATATAGTT........................................................................................................................................................................ 16 1 2 0.50 1 0 0 0 1 0 0 0 0 0
.................................................................................................................................................................................TTTCGGTTCTGGGGGGATTAT.................................................... 21 3 2 0.50 1 1 0 0 0 0 0 0 0 0
................................................................................................................................................................................CTTTGCGTTCTGGGGGGAGTA..................................................... 21 3 5 0.40 2 1 1 0 0 0 0 0 0 0
..............................ACAGCGTCGTCGTGGCCGAGC....................................................................................................................................................................................................... 21 3 3 0.33 1 0 0 0 1 0 0 0 0 0
.......................................................................................................................................................................................TTCTCGGGGAATTAATT.................................................. 17 1 3 0.33 1 0 0 0 0 0 0 0 1 0
..................................................................................................................................................................................TTGGGTTCTGGGGGAATTA..................................................... 19 2 3 0.33 1 1 0 0 0 0 0 0 0 0
.......................................................................CGGATATCGTTAGCTA................................................................................................................................................................... 16 1 3 0.33 1 0 0 0 0 0 0 0 1 0
...................................................................................................................................................................................TCCGTTCTGGGGGGAGTA..................................................... 18 2 3 0.33 1 1 0 0 0 0 0 0 0 0
............................................ACCGAGGTATCTGCGCTCT........................................................................................................................................................................................... 19 3 9 0.22 2 0 0 0 2 0 0 0 0 0
...............................................................................................................................................................GCTGGATACTTTGAAAAC......................................................................... 18 2 6 0.17 1 0 1 0 0 0 0 0 0 0
.................................................................................................................................................................................TTTGCGTTCTGGGGGAGT....................................................... 18 2 9 0.11 1 0 1 0 0 0 0 0 0 0
....................................................................ATACGGATATATTTAG...................................................................................................................................................................... 16 1 9 0.11 1 0 0 0 0 0 0 0 1 0
.....................................................................................................................CAGGGCCAGACTGGTGCGC.................................................................................................................. 19 3 16 0.06 1 0 0 0 1 0 0 0 0 0
..................................................................................................................................................................................TTTGGTTCTGGGGGGATTA..................................................... 19 3 16 0.06 1 1 0 0 0 0 0 0 0 0
............................GAGCTTCGTCGTCGTGA............................................................................................................................................................................................................. 17 2 17 0.06 1 0 0 0 0 0 0 1 0 0
..................................................................AGATCCGGATATAGTT........................................................................................................................................................................ 16 2 20 0.05 1 0 0 0 1 0 0 0 0 0
...............................................................................................................GATGTATAGGGCCTGACG......................................................................................................................... 18 3 20 0.05 1 0 0 0 0 0 0 0 0 1
.................................................................................................................................................................................TTTCCCTTATGGGGGAAGT...................................................... 19 3 20 0.05 1 0 0 0 1 0 0 0 0 0

Anti-sense strand reads

GCCTGTAGCTTTCAAGACGAAACCTCACCTCGTCGCAGCAGCACTGGCTCCAAAGACGGGAGTATGTATATGCCTATATCAATCGATATATATATATATTTATCAAATTTTCTATATATCCCGGTCTGACATCGCGCGAACGCTTTCACCTTTCATAGACGACCTATGAAACCTATGAAAGGCAAGACCCCCTTAATTAATCTGGTTATATAGGGTACGTTAGGCGCGCAATAAAAACAACAAAACAGTT
************************************************************************........................((...((((((((.....)))))))).....))************************************************************************************************************************* 		Read size # Mismatch Hit Count Total Norm Total SRR618934
dsim w501 ovaries
 M023
head
 SRR553486
Makindu_3 day-old ovaries
 SRR553487
NRT_0-2 hours eggs
 SRR553488
RT_0-2 hours eggs
 M053
female body
...............................................................................................................................GACATCGCGCGCACG............................................................................................................ 15 1 7 3.57 25 25 0 0 0 0 0
............................................................................................................................TCTGACATCGCGCGCACG............................................................................................................ 18 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................................................................................................................................ATAGGGTACGATAGGCCCG...................... 19 2 1 1.00 1 1 0 0 0 0 0
.................................................CCAAAGACAGGAGTATGGAC..................................................................................................................................................................................... 20 3 1 1.00 1 0 1 0 0 0 0
.............................................................................................................................CTGACATCGCGCGCACG............................................................................................................ 17 1 1 1.00 1 1 0 0 0 0 0
................................................TCCAAAGACAGGAGT........................................................................................................................................................................................... 15 1 8 0.63 5 0 0 5 0 0 0
........................................................CGGGAGTATGTATATG.................................................................................................................................................................................. 16 0 2 0.50 1 1 0 0 0 0 0
.............................................................................................................................CTGACATCGCGCGCA.............................................................................................................. 15 1 3 0.33 1 1 0 0 0 0 0
.......................................AGTGCTGGCTCCAAAGA.................................................................................................................................................................................................. 17 2 4 0.25 1 0 0 0 1 0 0
.............................................................................................................................CTGACATCGCGCGCAAG............................................................................................................ 17 2 4 0.25 1 1 0 0 0 0 0
.............................................................................................................................CTGACATCGCGCGCACGT........................................................................................................... 18 2 5 0.20 1 1 0 0 0 0 0
..................................GCAGCGCCTCTGGCTCCAAA.................................................................................................................................................................................................... 20 3 5 0.20 1 1 0 0 0 0 0
........................................GCGCGGGCTCCAAAGA.................................................................................................................................................................................................. 16 2 17 0.18 3 0 0 1 2 0 0
...........................................................................................................................................................................CCTACAAAAGGCAAGACC............................................................. 18 2 6 0.17 1 0 0 0 0 0 1
....GTAGCGTTCAAGACG....................................................................................................................................................................................................................................... 15 1 7 0.14 1 0 0 0 0 1 0
............................................................................................................................................................................................................................TAGGCGAGCAATAACAAC............ 18 2 20 0.10 2 0 2 0 0 0 0
....GTAGCTGTCAAGACG....................................................................................................................................................................................................................................... 15 1 14 0.07 1 0 0 0 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 3l:13603870-13604119 + dsi_25116 CG------------------GACATCGAAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATATA----GTTAGCTAT------------------ATATATA--TA--------------T--A--AAT--A--------GTTT--AAAAG---ATATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTC----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAA
droSec2 scaffold_0:6079598-6079851 + CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATATA----GTTAGCTAT------------------ATATATA--TAT------ATA----C--A--AAT--A--------GTTT--AAAAG---ATATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTAGATACTTTCCGTTT----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAA
dm3 chr3L:13932509-13932762 + CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATATA----GTTAGCTAT------------------ATATATA--TAT------ATA----C--A--AAT--A--------GTTT--AAAAG---ATATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTT----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAA
droEre2 scaffold_4784:13923716-13923972 + CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-ATACA--------------TACA--TATACGG--ATATA----GTTAGCTAT------------------AGATATA--TAA------ATA----T--A--AAA--A--------GTTT--AAAAG---AAATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTT----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATAT-GCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAA
droYak3 3L:14019469-14019740 + CTGA---GAAACG-------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACATATATACGG--ATATA----GTTAGCCAT------------------ATATATA--CAT------ATATATATTGA--AAT--A--------GTTT--AAAAAAAAAAATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAA
droEug1 scf7180000409456:113622-113890 + CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-ACGTCGTGACCG--AGGTTTCTGCCCTC-ATACTA--------------ACA--TATACGG--ATATA----GTTATATAT------------------ATATATA--TAT------A------T--A--AATATA--T-----ATTT--AAACT---GAATATA---GGGCCAGACTCT-------ATC-GCGT---TTTGCGAAAGTGGAAAGTATATACTTAGATAC-TTGGATACTTTCCGTTT----------------------------------------------------------------------------------TTGGGGGGAATTAATTAGACCAATACTCGTATATCCCATGCAATCCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAA
droBia1 scf7180000302428:5986656-5986919 - CG-AATCGAATCGGACATCGGACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCC-C-A------------------TACA--TATACGG--ATA--ACTACT---CTAC--------------ACACTTGCATAGAG------AT----------AT--AT--A--------GTTT--ACTAA---AAACATA---GGGCCAGACTCT-------AGC-----------GCGAAAGTGGAAAGTATCTGCT-GGATAC-TTGGTTACCTTCCGTTT-------------------------------------------------------------------------------------GGGGGATTTAATTAGACCAAT------GTATCCCATACTATCCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAA
droTak1 scf7180000415667:199735-199984 - CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC----TA-CTAT------------------ATATATA--T----------------------AT--AGGT-----GTTT--AAC-T-AAAACTATA---GGGCCAGACTCT-------ACC-GCGTTTCTTTGCGAAAGTGGAAAGTATCTGCT-GGATAC-TTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAA
droEle1 scf7180000491255:2378107-2378350 + CG------------------GACATCGGAAGTT---CTGCTTT-----------TGAGTG-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC--------T------------------------------------AT----------AT----ATA--T-------TT--AACAC-AAAAATATA---GGGCCAAACTTAAGCTCT-ACC-GCGT---TTTGCGAAAGTGGAAAGTATCTGAT-GGATAC-TTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGAAATTAATTAGACCAAT--------ATCCCATGCAAGGCGCGCGTTTAG-TT------------------TTCTTGTTTTGTCAA
droRho1 scf7180000778088:15956-16204 - CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGTGGAGTGG-AGTGGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC--------T------------------------------------AT----------AT----ATA--T-------TT--AACAC-AAAAATATA---GGGCCAGACTTTACCTCTGCAA-GCGT----TTGCGAAAGTGGAAAGTATCTGAT-GGATAC-TTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAT--------ATCCCATGCAAGGCGCGCATTTAG-TT------------------TTGTTGTTTTGTCAA
droFic1 scf7180000453784:250038-250309 + CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC----TAACCATACATATATATATA-CTATTTATATA--TAT--A----------T--A--AATATA--T-----GTTT--AACAC---AAATATA---GGGCCAGACTCT-------AGC-GCGT----TTGCGAAAGTGGAAAGTATCTAAT-GGATAC-TTGGATACTTTCCGTTT----------------------------------------------------------------------------------TTCGGGGGAATTAATTAGACCAAT------ATATCCCATGCAAGGCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAA
droKik1 scf7180000302441:2741790-2742036 + CG------------------GACAGCGGAAGTT---CTGCTTG----------------GAGAGT-----------GGA------GGAG-CA-GCGTCGTGACCG--AGGTTTCTGCCCTTTTTGCGA-------------TACA--AATACGGGGATA--AC--------T------------------------------------AC----------AT----GTA--TTTAACGTTT--AACGG---AGAAGTA---GAGCCAAACTCT-------GGC-GCGC---TTTGCGAAAGTGGAAAGTATCTGCT-GGATAC-TCGGATACTTTCCGCTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGAGCAAA--------GTCCCATGCTAAGCGCGCATTTAT-TT------------------TTGTTGTTTTGTCAA
droAna3 scaffold_13337:12011273-12011508 - CCGA---GAATCAGA-----G-AATCGGAAGTTG--GTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-T------------------TTCA--TTTATGG--ATA--AT-ATATAGCTCT----------------------------------AT----------AT----ATA--T-------TTTGAACAG---AAAAATCCAAAACCCAAAC----------------------TTGCGAAAGTGGAAAGTATCTGAT-GG---------ATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAA--------AATCCATGCAAAGCGCGCGTTTAT-TTTT----------------TTGTTGTTTTGTC--
droBip1 scf7180000396589:1975300-1975553 + CCGA---GAATCGGA-----G-AATCGGAAGTT---GTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-T------------------TTCA--TTTACGG--ATATAAC--ACTAG-TAT------------------ATAT----CTTT--GTAT----------AT----ATA--T-------TTTGAAAAG---AAAAATA---AAGACAAACTCT-------AGCCGCGT---TTTGCGAAAGTGGAAAGTATCTGAT-GG---------ATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAA--------A-TCCATGCAAAGCGCGCGTTTAT-TTT-----------------TTGTTGTTTTGTCAA
dp5 XR_group6:5754842-5755119 + CG------------------GA-------AGTTGTTCTGTTTT----------------G-GAGT-----------AGA------GC----GTTCGTCGTGACCG--AGGTTTCTGCCCCCTATACAA--------------CCA--ACTAGCCGA--------------CCA-ACCAACATATTTACCTATCTGCATATGTAT--GTAC----------AT----ATA--C-------TTATAGTAG---AAAAATA---AACCCAAACTGA-------AGT-TCAT----TTGCGAAAGTGGAAAGTATCCG----TATCCGTCGGATACTTTCCGTTT----------------------------------------------------------------------------------T--TGGAGAATTAACTAGACTAA---------ATCCCATGCAAAGCGCGCGTTTATATTTTTTTTTACTCTGTTTTG-TTTTGTTTTGTCAA
droPer2 scaffold_47:246472-246748 + CG------------------GA-------AGTGGTTCTGTTTT----------------G-GAGT-----------AGA------GC----GTTCGTCGTGACCG--AGGTTTCTGCCCCCTATACAA--------------CCA--ACTAGCCGA--------------CCA-ACCAACATATTTACCTATCTGCATATGTAT--GTAC----------AT----ATA--C-------TTATAGTAG---AAAAATA---AACCCAAACTGA-------AGT-TCGC----TTGCGAAAGTGGAAAGTATCCG----TATCCGTCGGATACTTTCCGTTT----------------------------------------------------------------------------------T--TGGAGAATTAATTAGACTAA---------ATCCCATGCAAAGCGCGCGTTTAT-TTTTTTTTTACTCTGTTTTG-TTTTGTTTTGTCAA
droWil2 scf2_1100000004762:2829641-2829942 - TC------------------GA-ATCGGAAGTT---CTGTTTCAGTTTCTGTTTTTTGTT-TTGT-----------GTTGCTGTTTCAG-CT-----TTTAGCCG--AGGTTTCTGCCATT-A------------------AACC---ATATGT--AAC--AT---------------------------------------AAAT--CT----------ATCTAT--A---------------GATT-ATAAATATA---G-TTAAGACTCT--CT---AGT-TAAC-TCTGTGCGAAAGTGGAAAGTATCTCAA-AGATAC---------TTTCCGGTT------------------GTTTTTATTTTGTTTGTTTTATTCTTCTTCTGCATCATTGTTTTTTTTGTGATACTTTTTTTTTATTGTGGGTTTTGTTTTGCT--------------TCTGTGTTTTTGGCACT---AT--A------------------TTGTTGTTTTGTCAA
droVir3 scaffold_13049:24056767-24056969 + CG------------------GA-ATCGGAAGTT---CTT-TTT----------------G-GCTTGC-------GTCGT--CG--TCGT-CG-TCGTCGTGACCG--AGGTTTCTGTTTGC-----TATAATATACCCAAATACA--T------------------------------------------------------AAAT--AC----------ATCCAT--A--------GT-----------------TA---G---------TT-------GGC-TGGT----TGTTGAAAGTGGAAAGTATCTCAT-AG---------ATACCATCCGAGC----------------------------------------------------------------------------------T--GAGTG------------CTA--------AA-TGCATGCAAAGCGCGCGTTTAT-CTT-----------------TTTTTGTTTTGTCAA
droMoj3 scaffold_6680:18680819-18681068 + CG------------------GA-ATCGGAAGTT---CTT-TTT----------------G-GCTTGCTGTTGTTGTCGC--C---GCAGTCG-CCGTCGTGACCGAGAGGTTTCTGTTTGT-----TATG------------ATA--TATCCAT--CTA--CC----TA---------------------------------AAAT--AC----------ATTCAT--A------------------G---CTAGTTA---G--TTAGCTGGT-----T-GGC-GCG-----TTGCGAAAGTGGAAAGTAG-------T---------AT-CTTTTTGTTTGCTATAGATAAAGCTCAAGT--------------------------------------------------------------C--A------------AGAGCTA--------AA-AGCATGCTAAGCGCGCGTTCAA-TTTTTTTCTGCTCT----TGTTGTTGTTTTGTCAA
droGri2 scaffold_15110:9649454-9649666 - TT------------------GGAATCGGAAGTT---CTT--TT----------------A-GCTTGCCGTCGTCGTCGA--CG--TTGT-CG-TCTTCGTGACCG--AGGTTTCTGTCTGC-----TA------------------------TG--ATATA----GCTATATAT------------------ATTTATA--TAA------ATA----C--AACTAT--A--------GT---------------------------------T-------AGT-TTGC-TTATTGCGAAAGTGGAAAGTATCTCAC-A---------GATACCATCCGAAT----------------------------------------------------------------------------------T--GAGAG------------CTA--------AA-TGCATGCAAAGCGCACGTTTAT--T------------------TTGTTGTTTTGTCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
CG------------------GACATCGAAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATATA----GTTAGCTAT------------------ATATATA--TA--------------T--A--AAT--A--------GTTT--AAAAG---ATATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTC----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..........................GAAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
.......................................................................................................................................................................................................................................................................GCCAGACTGT-------AGC-GCGC----TTGCG..........................................................................................................................................................................................................................2211.00101000000000000000
.......................ATCGAAAGTT---CTGCTTT----------------G-GAGT-----------GGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100010000000000000
.....................................................................................................................................................................................................................................................................................................................ATCTGCT-GGATACTTTGGATACT......................................................................................................................................................................................2311.00101000000000000000
.......................................................................................................................................................................................................................................................................................................................CTGCT-GGATACTTTGGATACT......................................................................................................................................................................................2111.00101000000000000000
........................................................................................................................................................................................................................................................................................AGC-GCGC----TTGCGAAAGTGGAAAG...............................................................................................................................................................................................................2311.00100000100000000000
.............................................................................GA------GCAG-CG-TCGTCGTGACCG--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010000000000000
.......................................................................................................................................................................................................................................................................................................................CTGCT-GGATACTTTGGATACTTTCC..................................................................................................................................................................................2511.00100100000000000000
........................................TTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2811.00101000000000000000
...........................................................................................................................................................................................................................................................ATATATA---GGGCCAGACTG...................................................................................................................................................................................................................................................1811.00110000000000000000
........................................................................................................................C-A------------------TACA--TATACGG--ATATA----GTTAGCT.......................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
droSec2
CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATATA----GTTAGCTAT------------------ATATATA--TAT------ATA----C--A--AAT--A--------GTTT--AAAAG---ATATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTAGATACTTTCCGTTT----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................................CGC----TTGCGAAAGTGGAAAGTATCT..........................................................................................................................................................................................................2411.0010010
.......................................................................................AG-CG-TCGTCGTGACCG--AGA.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
dm3
CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATATA----GTTAGCTAT------------------ATATATA--TAT------ATA----C--A--AAT--A--------GTTT--AAAAG---ATATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTT----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.....................................................................................................................................................................................................................................................................................................TGCGAAAGTGGAAAGTATCTGCT-GGA...................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................GAGT-----------GGA------GCAG-CG-TCGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
.............................AGTT---CTGCTTT----------------G-GAGT-----------GGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000
.............................AGTT---CTGCTTT----------------G-GAGT-----------GGA------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................................................................................................................CTGCCCTC-A------------------TACA--TATACGG--A......................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................CTGCCCTC-A------------------TACA--TATAC...........................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AGC-GCGC----TTGCGAAAGTGGAAA................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AT------ATATCCCATGCAATCCGCGCGTT-A.....................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
..............................................................AGT-----------GGA------GCAG-CG-TCGTCGTGAC............................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................GA------GCAG-CG-TCGTCGTGACCG--........................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................TTT----------------G-GAGT-----------GGA------GCAG-CG-TC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................ATA---GGGCCAGACTGT-------AGC-GC.....................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCCGCGCGTT-AT-TT------------------TTGTTGTT.......2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TT---CTGCTTT----------------G-GAGT-----------GGA------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--ATC.....................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GT-----------GGA------GCAG-CG-TCGTCGTGACCG--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.............................................................................................................................................................................................................................................GTTT--AAAAG---ATATATA---GGGCCAGACT....................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................T--AAAAG---ATATATA---GGGCC.........................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................ATACTTTGGATACTTTCCGTTT----------------------------------------------------------------------------------T--GG.......................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................CTGCTTT----------------G-GAGT-----------GGA------GCAG-C........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................GGTTTCTGCCCTC-A------------------TACA--................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................A------GCAG-CG-TCGTCGTGACCG--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.......................................................................................AG-CG-TCGTCGTGACCG--AGA.....................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
CG------------------GACATCGGAAGTT---CTGCTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..........................................T----------------G-GAGT-----------GGA------GCAG-CG-TCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGCGTT-AT-TT------------------TTGTTGTT.......2011.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................T---CTGCTTT----------------G-GAGT-----------GGA------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................GCAG-CG-TCGTCGTGACCG--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................GT-----------GGA------GCAG-CG-TCGTCGTGACCG--A.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.........................................TT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................GCAG-CG-TCGTCGTGACCG--AGA.....................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................A---GGGCCAGACTGT-------AA.........................................................................................................................................................................................................................................1550.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-ATACA--------------TACA--TATACGG--ATATA----GTTAGCTAT------------------AGATATA--TAA------ATA----T--A--AAA--A--------GTTT--AAAAG---AAATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTT----------------------------------------------------------------------------------T--GGGGGAATTAATTAGACCAAT------ATAT-GCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................AGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TC....................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
.......................................................................................AG-CG-TCGTCGTGACCG--AGGT....................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100000
...........................GAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000001
....................................................................................................................................................ATACGG--ATATA----GTTAGCTAT------------------...................................................................................................................................................................................................................................................................................................................................2011.0010000100
.............................AGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-C........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010001000
........................................TTT----------------G-GAGT-----------GGA------GCAG-CG-TC....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
..............................................................................A------GCAG-CG-TCGTCGTGACCG--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
....................................................................................................GACCG--AGGTTTCTGCCCTC-AT.......................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
CTGA---GAAACG-------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACATATATACGG--ATATA----GTTAGCCAT------------------ATATATA--CAT------ATATATATTGA--AAT--A--------GTTT--AAAAAAAAAAATATA---GGGCCAGACTGT-------AGC-GCGC----TTGCGAAAGTGGAAAGTATCTGCT-GGATACTTTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTT-AT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............G-------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2618.00800000000008
........................TCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2414.00400000000004
..............................................................................................................................................................................................................................................................TATA---GGGCCAGACTGT-------AGC-.......................................................................................................................................................................................................................................1911.00100000010000
....................................................................................................................................................................................................................................................................................................................................TTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATT................................................................................2611.00100000010000
...........................GAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-T.....................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100000010000
.......................................................................................................................................................................................................................................................................................................................CTGCT-GGATACTTTGGATACT......................................................................................................................................................................................2111.00100000010000
...........................GAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TC....................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00100000010000
....................................................................................................................................................................................................................................................................................................................TATCTGCT-GGATACTTTGG...........................................................................................................................................................................................1911.00101000000000
..........................GGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GC............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100000000
...............................................................GT-----------GGA------GCAG-CG-TCGTCGTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
....................................................................................................................................................ATACGG--ATATA----GTTAGCCAT------------------...................................................................................................................................................................................................................................................................................................................................2011.00101000000000
...........CG-------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................................................................................................................................................................................................................................................................................................CTGCT-GGATACTTTGGATACTTTCC..................................................................................................................................................................................2511.00100000010000
droEug1
CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-ACGTCGTGACCG--AGGTTTCTGCCCTC-ATACTA--------------ACA--TATACGG--ATATA----GTTATATAT------------------ATATATA--TAT------A------T--A--AATATA--T-----ATTT--AAACT---GAATATA---GGGCCAGACTCT-------ATC-GCGT---TTTGCGAAAGTGGAAAGTATATACTTAGATAC-TTGGATACTTTCCGTTT----------------------------------------------------------------------------------TTGGGGGGAATTAATTAGACCAATACTCGTATATCCCATGCAATCCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
droBia1
CG-AATCGAATCGGACATCGGACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCC-C-A------------------TACA--TATACGG--ATA--ACTACT---CTAC--------------ACACTTGCATAGAG------AT----------AT--AT--A--------GTTT--ACTAA---AAACATA---GGGCCAGACTCT-------AGC-----------GCGAAAGTGGAAAGTATCTGCT-GGATAC-TTGGTTACCTTCCGTTT-------------------------------------------------------------------------------------GGGGGATTTAATTAGACCAAT------GTATCCCATACTATCCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
droTak1
CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC----TA-CTAT------------------ATATATA--T----------------------AT--AGGT-----GTTT--AAC-T-AAAACTATA---GGGCCAGACTCT-------ACC-GCGTTTCTTTGCGAAAGTGGAAAGTATCTGCT-GGATAC-TTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAT------ATATCCCATGCAATCCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
droEle1
CG------------------GACATCGGAAGTT---CTGCTTT-----------TGAGTG-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC--------T------------------------------------AT----------AT----ATA--T-------TT--AACAC-AAAAATATA---GGGCCAAACTTAAGCTCT-ACC-GCGT---TTTGCGAAAGTGGAAAGTATCTGAT-GGATAC-TTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGAAATTAATTAGACCAAT--------ATCCCATGCAAGGCGCGCGTTTAG-TT------------------TTCTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
droRho1
CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGTGGAGTGG-AGTGGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC--------T------------------------------------AT----------AT----ATA--T-------TT--AACAC-AAAAATATA---GGGCCAGACTTTACCTCTGCAA-GCGT----TTGCGAAAGTGGAAAGTATCTGAT-GGATAC-TTGGATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAT--------ATCCCATGCAAGGCGCGCATTTAG-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
droFic1
CG------------------GACATCGGAAGTT---CTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-A------------------TACA--TATACGG--ATA--AC----TAACCATACATATATATATA-CTATTTATATA--TAT--A----------T--A--AATATA--T-----GTTT--AACAC---AAATATA---GGGCCAGACTCT-------AGC-GCGT----TTGCGAAAGTGGAAAGTATCTAAT-GGATAC-TTGGATACTTTCCGTTT----------------------------------------------------------------------------------TTCGGGGGAATTAATTAGACCAAT------ATATCCCATGCAAGGCGCGCGTTTAT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
droKik1
CG------------------GACAGCGGAAGTT---CTGCTTG----------------GAGAGT-----------GGA------GGAG-CA-GCGTCGTGACCG--AGGTTTCTGCCCTTTTTGCGA-------------TACA--AATACGGGGATA--AC--------T------------------------------------AC----------AT----GTA--TTTAACGTTT--AACGG---AGAAGTA---GAGCCAAACTCT-------GGC-GCGC---TTTGCGAAAGTGGAAAGTATCTGCT-GGATAC-TCGGATACTTTCCGCTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGAGCAAA--------GTCCCATGCTAAGCGCGCATTTAT-TT------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
droAna3
CCGA---GAATCAGA-----G-AATCGGAAGTTG--GTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-T------------------TTCA--TTTATGG--ATA--AT-ATATAGCTCT----------------------------------AT----------AT----ATA--T-------TTTGAACAG---AAAAATCCAAAACCCAAAC----------------------TTGCGAAAGTGGAAAGTATCTGAT-GG---------ATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAA--------AATCCATGCAAAGCGCGCGTTTAT-TTTT----------------TTGTTGTTTTGTC--SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................GGA------GCAG-CG-TCGTCGTGACCG--A.......................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
droBip1
CCGA---GAATCGGA-----G-AATCGGAAGTT---GTGCTTT----------------G-GAGT-----------GGA------GCAG-CG-TCGTCGTGACCG--AGGTTTCTGCCCTC-T------------------TTCA--TTTACGG--ATATAAC--ACTAG-TAT------------------ATAT----CTTT--GTAT----------AT----ATA--T-------TTTGAAAAG---AAAAATA---AAGACAAACTCT-------AGCCGCGT---TTTGCGAAAGTGGAAAGTATCTGAT-GG---------ATACTTTCCGTTT-------------------------------------------------------------------------------------GGGGGAATTAATTAGACCAAA--------A-TCCATGCAAAGCGCGCGTTTAT-TTT-----------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotal
No Reads
dp5
CG------------------GA-------AGTTGTTCTGTTTT----------------G-GAGT-----------AGA------GC----GTTCGTCGTGACCG--AGGTTTCTGCCCCCTATACAA--------------CCA--ACTAGCCGA--------------CCA-ACCAACATATTTACCTATCTGCATATGTAT--GTAC----------AT----ATA--C-------TTATAGTAG---AAAAATA---AACCCAAACTGA-------AGT-TCAT----TTGCGAAAGTGGAAAGTATCCG----TATCCGTCGGATACTTTCCGTTT----------------------------------------------------------------------------------T--TGGAGAATTAACTAGACTAA---------ATCCCATGCAAAGCGCGCGTTTATATTTTTTTTTACTCTGTTTTG-TTTTGTTTTGTCAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.................................GTTCTGTTTT----------------G-GAGT-----------AGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
...............................................................GT-----------AGA------GC----GTTCGTCGTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000002
............................................................................................................................................................................................................................................................................................................GTGGAAAGTATCCG----TATCCGTCGGAT.........................................................................................................................................................................................2611.0010100000000
......................................GTTTT----------------G-GAGT-----------AGA------GC----GTT.....................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
................................................................................................................................................................................CAACATATTTACCTATCTGCATAT...........................................................................................................................................................................................................................................................................................................................2411.0010100000000
................................TGTTCTGTTTT----------------G-GAGT-----------AGA------GC----........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................AGTTGTTCTGTTTT----------------G-GAGT-----------AGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................GTTGTTCTGTTTT----------------G-GAGT-----------AGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
...............................................................................................................................................CA--ACTAGCCGA--------------CCA-ACCAAC...............................................................................................................................................................................................................................................................................................................................................2011.0010010000000
droPer2
CG------------------GA-------AGTGGTTCTGTTTT----------------G-GAGT-----------AGA------GC----GTTCGTCGTGACCG--AGGTTTCTGCCCCCTATACAA--------------CCA--ACTAGCCGA--------------CCA-ACCAACATATTTACCTATCTGCATATGTAT--GTAC----------AT----ATA--C-------TTATAGTAG---AAAAATA---AACCCAAACTGA-------AGT-TCGC----TTGCGAAAGTGGAAAGTATCCG----TATCCGTCGGATACTTTCCGTTT----------------------------------------------------------------------------------T--TGGAGAATTAATTAGACTAA---------ATCCCATGCAAAGCGCGCGTTTAT-TTTTTTTTTACTCTGTTTTG-TTTTGTTTTGTCAASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
................................GGTTCTGTTTT----------------G-GAGT-----------AGA------GC----........................................................................................................................................................................................................................................................................................................................................................................................................................................2114.004201001
.................................GTTCTGTTTT----------------G-GAGT-----------AGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................1813.003300000
...............................................................................................................................................CA--ACTAGCCGA--------------CCA-ACCAAC...............................................................................................................................................................................................................................................................................................................................................2011.001010000
................................GGTTCTGTTTT----------------G-GAGT-----------AGA------..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
.......................................TTTT----------------G-GAGT-----------AGA------GC----GTTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
.........................................TT----------------G-GAGT-----------AGA------GC----GTTCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001010000
..............................................................................................CGTCGTGACCG--AGGTTTCTGCCCC...........................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
droWil2
TC------------------GA-ATCGGAAGTT---CTGTTTCAGTTTCTGTTTTTTGTT-TTGT-----------GTTGCTGTTTCAG-CT-----TTTAGCCG--AGGTTTCTGCCATT-A------------------AACC---ATATGT--AAC--AT---------------------------------------AAAT--CT----------ATCTAT--A---------------GATT-ATAAATATA---G-TTAAGACTCT--CT---AGT-TAAC-TCTGTGCGAAAGTGGAAAGTATCTCAA-AGATAC---------TTTCCGGTT------------------GTTTTTATTTTGTTTGTTTTATTCTTCTTCTGCATCATTGTTTTTTTTGTGATACTTTTTTTTTATTGTGGGTTTTGTTTTGCT--------------TCTGTGTTTTTGGCACT---AT--A------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................................CTGCCATT-A------------------AACC---ATATGT--.......................................................................................................................................................................................................................................................................................................................................................................1911.00110000
.........................................................................................................................................................................................................................................................................................GT-TAAC-TCTGTGCGAAAGTGGAAAGT..............................................................................................................................................................................................................2611.00100100
...............................................................................................................................................................................................................................................................................................C-TCTGTGCGAAAGTGGAAAG...............................................................................................................................................................................................................2011.00100100
............................................GTTTCTGTTTTTTGTT-TTGT-----------GT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100
..............................................................................TGCTGTTTCAG-CT-----TTTAGCCG--AG......................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100001
............................................................................................................................................................................................................................................................................................TAAC-TCTGTGCGAAAGTGGAAAGT..............................................................................................................................................................................................................2411.00100100
..................................................................................................................................................................................................................................................................................................CTGTGCGAAAGTGGAAAGT..............................................................................................................................................................................................................1911.00100100
.........................................................................................................................................................................................................................................................................................GT-TAAC-TCTGTGCGAAAGTGGAAA................................................................................................................................................................................................................2411.00100100
.......................................................................................................................................................................................................................................................................................................................CTCAA-AGATAC---------TTTCCGGTT------------------GT..........................................................................................................................................................2211.00100100
........................................................................................................................................................................................................................................................................................AGT-TAAC-TCTGTGCGAAAGTGGAAAGT..............................................................................................................................................................................................................2711.00100100
......................................................TTTGTT-TTGT-----------GTTGCTGT...............................................................................................................................................................................................................................................................................................................................................................................................................................................1830.33110000
..............................................TTCTGTTTTTTGTT-TTGT-----------GT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................2050.20100100
droVir3
CG------------------GA-ATCGGAAGTT---CTT-TTT----------------G-GCTTGC-------GTCGT--CG--TCGT-CG-TCGTCGTGACCG--AGGTTTCTGTTTGC-----TATAATATACCCAAATACA--T------------------------------------------------------AAAT--AC----------ATCCAT--A--------GT-----------------TA---G---------TT-------GGC-TGGT----TGTTGAAAGTGGAAAGTATCTCAT-AG---------ATACCATCCGAGC----------------------------------------------------------------------------------T--GAGTG------------CTA--------AA-TGCATGCAAAGCGCGCGTTTAT-CTT-----------------TTTTTGTTTTGTCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............................................................................................................................................................................................................................................................................................GT----TGTTGAAAGTGGAAAGT..............................................................................................................................................................................................................1912.002000000000100000000000000000000000000000000000000000000000000010
.G------------------GA-ATCGGAAGTT---CTT-TTT----------------G-GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000002
.....................................................................................................................................................................................................................................................................................................................ATCTCAT-AG---------ATACCATCCGAGC----------------------------------------------------------------------------------T--GAGT.....................................................................................2712.002002000000000000000000000000000000000000000000000000000000000000
............................................................................CGT--CG--TCGT-CG-TCGTCGTGACCG--A.......................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................CTCAT-AG---------ATACCATCCGAGC----------------------------------------------------------------------------------T--.........................................................................................2111.001000000000000000000000000000000000000000000000000000000000001000
.............................AGTT---CTT-TTT----------------G-GCTTGC-------GTCGT--CG--TC............................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
..........................................T----------------G-GCTTGC-------GTCGT--CG--TCG...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000000000000000000000000001000000000000000000000000
..................................................................................G--TCGT-CG-TCGTCGTGACC...........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000000000000000000000000000000000000000000000000000000000000
....................GA-ATCGGAAGTT---CTT-TTT----------------G-GCTTGC-------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000000000000000000000000000010000000000000000000000000
................................................................TGC-------GTCGT--CG--TCGT-CG-TCGTCGT...............................................................................................................................................................................................................................................................................................................................................................................................................................2360.171000000000010000000000000000000000000000000000000000000000000000
..........................................................................GTCGT--CG--TCGT-CG-TCGTC.................................................................................................................................................................................................................................................................................................................................................................................................................................18200.102000000020000000000000000000000000000000000000000000000000000000
.............................................................................GT--CG--TCGT-CG-TCGTCGTG..............................................................................................................................................................................................................................................................................................................................................................................................................................18200.102110000000000000000000000000000000000000000000000000000000000000
droMoj3
CG------------------GA-ATCGGAAGTT---CTT-TTT----------------G-GCTTGCTGTTGTTGTCGC--C---GCAGTCG-CCGTCGTGACCGAGAGGTTTCTGTTTGT-----TATG------------ATA--TATCCAT--CTA--CC----TA---------------------------------AAAT--AC----------ATTCAT--A------------------G---CTAGTTA---G--TTAGCTGGT-----T-GGC-GCG-----TTGCGAAAGTGGAAAGTAG-------T---------AT-CTTTTTGTTTGCTATAGATAAAGCTCAAGT--------------------------------------------------------------C--A------------AGAGCTA--------AA-AGCATGCTAAGCGCGCGTTCAA-TTTTTTTCTGCTCT----TGTTGTTGTTTTGTCAASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..............................................................................................................................................................................................................................................................................................G-----TTGCGAAAGTGGAAAGTAG-------T---------...........................................................................................................................................................................................2111.001000001
..............................GTT---CTT-TTT----------------G-GCTTGCTGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
....................................CTT-TTT----------------G-GCTTGCTGTTGTTGTCGC--C---GC............................................................................................................................................................................................................................................................................................................................................................................................................................................2811.001100000
.................................................................................................................................................................................................................................................................................................................AAGTAG-------T---------AT-CTTTTTGTTTGCT...........................................................................................................................................................................2211.001000001
.................................................................................................................................................................................................................................................................................................................................................GTTTGCTATAGATAAAGCTC..............................................................................................................................................................2011.001000001
droGri2
TT------------------GGAATCGGAAGTT---CTT--TT----------------A-GCTTGCCGTCGTCGTCGA--CG--TTGT-CG-TCTTCGTGACCG--AGGTTTCTGTCTGC-----TA------------------------TG--ATATA----GCTATATAT------------------ATTTATA--TAA------ATA----C--AACTAT--A--------GT---------------------------------T-------AGT-TTGC-TTATTGCGAAAGTGGAAAGTATCTCAC-A---------GATACCATCCGAAT----------------------------------------------------------------------------------T--GAGAG------------CTA--------AA-TGCATGCAAAGCGCACGTTTAT--T------------------TTGTTGTTTTGTCAASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/18/2015 at 05:57 PM