ID:

dsi_25086

 Coordinate:

x:13686454-13686683 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-51.1 -51.1 -51.1

Flybase annnotation

exon [x_13686684_13686933_-]; CDS [x_13686684_13686759_-]; exon [x_13686282_13686453_-]; CDS [x_13686282_13686453_-]; intron [x_13686454_13686683_-]

Repeatable elements

NameClassFamilyStrand
(CA)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TTGCTTGCAAAAGAACGCATGCAAAAATAATTCAACAGATAATAACAGAGGTGTGTGTGGGTGTATATGTGTGTGTGTGTGTGTGCCACAAGTCCATTCATAAACTCTGTCTACACGGCAAAGAAAAACGTGCCCTTCTGGCATCGAAATATTCATATACATGCGAGTGATTCTTTTTTTTTCTGGTGCTCCTGCTCTCACGACTAATGCTAATCCCTGTGTTCTGCTCTCTCTTTTTTTGCGATCCTACGCGGTGATGGTGATGTTGGTGATCCTGCAGGACATAATGTGCCAACAAAAGCAACGAGCAACGGGACCATGTGCGCCAAT
**************************************************((((((((((((((.((((.(((....((((.....))))....))).))))..((.((((.....)))).)).....((((((.....)))).))..))))))))))))))((.((.((.........)).)).))....((((..(((((((....((((.((.((((((..(((.............))).....)))))).))))))...))).))))....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total SRR902009
testis
 SRR618934
dsim w501 ovaries
 M023
head
 M024
male body		 GSM343915
embryo
 O001
Testis
 SRR553486
Makindu_3 day-old ovaries
 M025
embryo
 M053
female body
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 SRR553487
NRT_0-2 hours eggs
..................................................................................................................................................................................................................TAAGACCTCTGTTCTGCTCTC................................................................................................... 21 3 2 2.00 4 0 0 0 2 0 1 0 1 0 0 0 0
...........................................AACAGAGGTGTGTGTGGGTG........................................................................................................................................................................................................................................................................... 20 0 1 1.00 1 0 0 0 0 1 0 0 0 0 0 0 0
......................................................................................................................................................................................................CACGACTAATGCTAATCCC................................................................................................................. 19 0 1 1.00 1 0 0 1 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................................................................................................................ACAAAAGCAACGAGCAACGGGACCATG......... 27 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
.................................................................................................................................................................................................................................................................................................TGCCAACAAAAGCAACGAGCAACGGGACCA........... 30 0 1 1.00 1 1 0 0 0 0 0 0 0 0 0 0 0
...................................................................................................................................................................................................................AAGACCTCTGTTCTGCTCTC................................................................................................... 20 3 5 0.80 4 0 0 1 0 0 1 0 1 1 0 0 0
...........................................................................................................................................................................................................................................................................GGTGATCATGCAGGAC............................................... 16 1 2 0.50 1 0 1 0 0 0 0 0 0 0 0 0 0
............................................................GTGAATATGTGTGTGTGTGTGTGT...................................................................................................................................................................................................................................................... 24 1 20 0.30 6 0 1 0 0 0 5 0 0 0 0 0 0
..............................................................................................................................................................................................................................................................................GACCCTGTAGGACTTAATG......................................... 19 3 14 0.29 4 0 0 0 0 0 0 4 0 0 0 0 0
.......................................................................................................................................................................................................................................................................................................CAAAAGAAACGAGCAAC.................. 17 1 4 0.25 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................................................................................................................................................TTGCGATCCTACGTA............................................................................. 15 2 20 0.25 5 0 0 0 0 0 0 5 0 0 0 0 0
.......................................................................................................................................................................................................................CCTCTGTTCTGCTCTC................................................................................................... 16 1 9 0.22 2 0 2 0 0 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GATGTCGGTGATCCT...................................................... 15 1 5 0.20 1 0 0 0 0 0 0 1 0 0 0 0 0
......................................ATAATAACTGAGGTGT.................................................................................................................................................................................................................................................................................... 16 1 5 0.20 1 0 1 0 0 0 0 0 0 0 0 0 0
......................................................................................................................................................................................................CAGGACTAATGCTACTACC................................................................................................................. 19 3 6 0.17 1 0 0 0 1 0 0 0 0 0 0 0 0
.....................................................................................................................................................................................................................................................................GATGTTGGTGATCCTGTACT................................................. 20 3 10 0.10 1 0 0 0 0 0 0 0 0 0 1 0 0
.............................................................................................................................................................................................................................................................................................................CAATCAGCAACGGGAGCATG......... 20 3 11 0.09 1 0 1 0 0 0 0 0 0 0 0 0 0
..............................................................................................................CTTCGCGGCAAAGAAAAA.......................................................................................................................................................................................................... 18 2 12 0.08 1 0 0 0 0 0 0 0 0 0 0 1 0
................................................................................................................................................................................................................GCTAATGCCTGTGTCCT......................................................................................................... 17 2 14 0.07 1 0 0 0 0 0 0 0 0 0 0 0 1
......................................ATAATAACGGAGGTGTTTT................................................................................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0 0 0 0 0 0 0 0

Anti-sense strand reads

AACGAACGTTTTCTTGCGTACGTTTTTATTAAGTTGTCTATTATTGTCTCCACACACACCCACATATACACACACACACACACACGGTGTTCAGGTAAGTATTTGAGACAGATGTGCCGTTTCTTTTTGCACGGGAAGACCGTAGCTTTATAAGTATATGTACGCTCACTAAGAAAAAAAAAGACCACGAGGACGAGAGTGCTGATTACGATTAGGGACACAAGACGAGAGAGAAAAAAACGCTAGGATGCGCCACTACCACTACAACCACTAGGACGTCCTGTATTACACGGTTGTTTTCGTTGCTCGTTGCCCTGGTACACGCGGTTA
**************************************************((((((((((((((.((((.(((....((((.....))))....))).))))..((.((((.....)))).)).....((((((.....)))).))..))))))))))))))((.((.((.........)).)).))....((((..(((((((....((((.((.((((((..(((.............))).....)))))).))))))...))).))))....))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM343915
embryo
 SRR902009
testis
 SRR553487
NRT_0-2 hours eggs
 SRR618934
dsim w501 ovaries
 SRR553485
Chicharo_3 day-old ovaries
 SRR553488
RT_0-2 hours eggs
 M023
head
...................................TTCTAGTATTTTCTCCACACACA................................................................................................................................................................................................................................................................................ 23 3 1 1.00 1 1 0 0 0 0 0 0
........................................................................................GATCAGGTAAGTATTGGAAAC............................................................................................................................................................................................................................. 21 3 2 1.00 2 0 2 0 0 0 0 0
....................................TCTAGTATTTTCTCCACACACACT.............................................................................................................................................................................................................................................................................. 24 3 1 1.00 1 1 0 0 0 0 0 0
....................................TCTCGTATTTTCTCCACACACA................................................................................................................................................................................................................................................................................ 22 3 2 0.50 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................................................AAGACGAGAGAGAAACAA........................................................................................... 18 1 2 0.50 1 0 0 1 0 0 0 0
.........................TTATTAAGTTGACTATTAT.............................................................................................................................................................................................................................................................................................. 19 1 2 0.50 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................................................................................................................................CTGTAGCTCGTTGCCCTGGTA.......... 21 3 3 0.33 1 0 0 0 1 0 0 0
.........................................................................................................................TCTTTTAGCAGGGCAAGACC............................................................................................................................................................................................. 20 3 6 0.33 2 0 0 1 0 0 1 0
..........................................................................................TCAGGTAAGTATTGGAAA.............................................................................................................................................................................................................................. 18 2 8 0.25 2 0 0 0 0 2 0 0
............................................................................................................................TTTAGCAGGGCAAGACCGTA.......................................................................................................................................................................................... 20 3 4 0.25 1 0 0 1 0 0 0 0
.........................................................................................ATCAGGTAAGTATTGGAAAC............................................................................................................................................................................................................................. 20 3 7 0.14 1 0 0 1 0 0 0 0
..............................................................................................................................................................................AAAAAAAGTACCACAAGGACG....................................................................................................................................... 21 3 8 0.13 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................................................................ACCGCTAGGACGTCC................................................. 15 1 14 0.07 1 0 0 0 0 0 1 0
..........................................................................................TCAGGTAAGTATTGGAA............................................................................................................................................................................................................................... 17 2 16 0.06 1 0 0 0 0 1 0 0
..........................................................................................TCAGGCAAGTATTGGAAAC............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 0 0 0 0 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droSim2 x:13686404-13686733 - dsi_25086 TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGGGTGTA-----------------------TATGTGTG---------TGT----------------------------------------------------GTGTGTGTGCCACAAGTCCATTCATAAACTCTGTCTACACGGCA-A---A------------GAAA---AA---CGTGCCCTT-------------CTGGCA-TCGAA--ATATTCATA-----TAC---------------------------------------------ATGCGAGTGAT-------------------------------------------------------------------------------TCT-TTTTTTTTCTGGTG-CTCC------TGC-TCTCACG---------------ACTAATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT----T-------GCGAT-----------------------------------------------------------------------------------------------------CCTACGCGGTGA--TGGTGATGTT-------------GGTGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAAT
droSec2 scaffold_20:1076304-1076637 - TTGCTTGCAAAAGAACGCATGCCAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGGGTGTA-----------------------TATATATATA----GTATGT----------------------------------------------------GTGTGTGTGCCACATGTCCATTCATAAACTCTGTCTACACGGCA-A---A------------GAAA---AA---CGTGCCCTT-------------CTGGCA-TCGAA--ATATTCATA-----TAT---------------------------------------------ATGCGAGTGAT-------------------------------------------------------------------------------TCT-T-TTTTTTCTGGTG-CTCC------TGC-TCTCACG---------------ACTTATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT----T-------GCGAT-----------------------------------------------------------------------------------------------------CCTACGCGGTGA--TGGTGATGTT-------------GATGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAAT
dm3 chrX:14485072-14485402 - TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG------------TG-----CTTG--TGTGTGTATGT-GTGCGTGT----GT-----------------------------------------------TGTGTG----AAGTCCATTCATAAACTCTGTCTACACGTCA-A---A-----------AAAAA---AA---CGTGCCCTT-------------CTGGCA-TCGAA--ATACTCATA-----TCT---------------------------------------------ATGCGTGTGAT-------------------------------------------------------------------------------ACT-T--TTTTTTTAGTG-CT----------------ACG---------------ATTAATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT----T-------GCTAT-----------------------------------------------------------------------------------------------------CCTTCGCGGTGATATGGTGATGTT-------------GCTGATCCT-------------GCAGGACATAATGTGCCAACAAAAACAACG---AGCAACGGGACCATGTGCGCCAAT
droEre2 scaffold_4690:12488079-12488421 + TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG-----------------------CGGGTGCA---------TGT----------------------------------------------------GTGTGTGTGTCGCCAGTCCATTCATAAACTCTGTCTACACGGAA-A---A------------GAAA---AA---CGTGCCTGT-------------CTGGCA-TCGGA--ATA------------------------------------------TCAAATACCAAATGTCTATGC----GAC-------------------------------------------------------------------------------TCT-T-TTTTTTCCAGTG-CTCC------TA--ACTCACG---------------ATTCTTGCTAATCCATGTGT----TCTGCTCTCT--CT-----TTTTT-TTA-----T---CGAT-----------------------------------------------------------------------------------------------------GCCCCGCGGTGA--TGGTGATGAT---GGTCACGA-TGGCGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAAT
droYak3 X:8719429-8719770 - TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTCTGTGTG------------TG-----TGTGCGGGTGTATC---CGTATGT----------------------------------------------------GTATGTGTGTCACAAGTCCATTCATAAACTCTGTCTACACGGAA-A---A------------GAAA---AA---CGTGCC---ATATACTTGCTGTGTGAT--------AT-----------------------------------------------------------------AAGTGAT-------------------------------------------------------------------------------TCT-TTTTTTTTCTGGTG-CTCC------TG---CTCACG---------------ACTTATGCTAATTCATGTGT----TCTGCTCTCTGTCT-----TTTTT-T--T-------GCGAT-----------------------------------------------------------------------------------------------------CCTTTGCGGTGA--TGGTGATGAT---GATGATGA-TGGTGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAAT
droEug1 scf7180000409008:913899-914278 - TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTA-----------------------CTAGTGTGTA----CTCTGT----------------------------------------------------GTGTGTGTGTTATAGGTTCATTCATAAAAACCATCTACACAGAG-A---A------------GAAA---AC---TGTGCGGTCGT----------TTCGAT--------ATAAGC------------CATCCGGTGA--------ATGAGGAAAATCAAA-ACGAATTTTCTAT----------------------------------------------------------------------------------------ACA-TTTTTTTTATGGTG-ATCA-AAGTT---CTTTT--C--------C-------AAAATGCTAATCAATGTGT----TCTGCTCTCT--CT-----TTTTTTCGA-----TCC--G-T-------------------------------------------------------------------------CTGGC------------GA-CTTGTGATCCTTCGGTGTGA--TGTTGATGAT---CTTAA-TA-TGCTGGTCTT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---ACCAACGGGACCATGTGCGCCAAT
droBia1 scf7180000302126:247676-247993 - TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG------------TG----------------------------------------------------------------------------------AGAGTGTGTCACAGGTTCATTCATAAACTCCGGCTACACAGCA-A---G------------AAAA---AG---TGTGCGGCCC---------------------CAT--ATCCCCATA-----TACGATGCGCTGCGGTTGTTTATGCTCATA-AGAAATA-------------CGAATCA----------------------------------------------------------------------------------TCT-TTTTTTCTGGTG-G------------CTA-C--C--------T-------CCCATGCTAATTCCTGTGT----TCTGTTCTCT--CT-----TTTCT-CAA-----T--GCGAT-----------------------------------------------------------------------------------------------------CCTCCGC---------------------------------GATCCT-------------GCAGGACATAATGTGTCAACAAAAGCAACG---ACCAACGGGACCATGTGCGCCAAT
droTak1 scf7180000415169:412590-412718 + TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGCGAGTG------------TG-----TGTGCGAG---------------------------------------------------------------------------T-------GTCCATTCATAAACTCTGTCTACACGGAA-A---A------------TAAA---AA---TGTGCGGTC-------------TTGATA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEle1 scf7180000490982:642713-643072 + TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTGGCGTGAGCTGTGTGCTG--TGTGT-GGTGTG---------TGTGT----G--------------------------------------CCAATGCGAGTGTGTGTT-TTACTCCATTCATAAACTTTGTATGCACAGAA-A---A------------GAAA---TT---CGTTAT---GTAT----------------------ACCAGC------------TATCC------------------------------------------------GATTCG-------------------------------ATGCAAATTGTTTTCTGTG--------------TAT--G-------ATTT-TTTTTTCTGGTGTCTGA----TG---CTAAT--C--------CATGTGAAACCATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT-TGA-----TCC--G-T-------------------------------------------------------------------------CTGCT------------AC-CGT-------------------------------------------GTGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAAT
droRho1 scf7180000779765:20305-20657 - TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG------------TG-----TGTGT-GGTGTG---------TGCGT----G---------------------------------------------GTGTGTGT-------GTCCATTCATAAACTCTGTCTACACAGAA-A---A------------GAAA---AT---CGTC---------------------------GAATGAAAGT------------CATCCG------------------------------------------------TTTCGGTGGTTTCAGTTAATGTGAACTGGCGAAGCGATCGAAATTGTTTTCTGTGTACACCTTGG--T-TAT--G-------TTCT-TTTTTTCTGGTG-C-------------------------------------CTATGCTAATCCATGTGT----TCTGCTCTCT--CT-----TTTCC-CGA-----TCC--G-T-------------------------------------------------------------------------C----------TGAT-------------CCTTCGCG--------------------------------CATCCTC------------CCAGGACATAATGTGCCAACAAAAGCAACG---ACCAACGGGACCATGTGCGCCAAT
droFic1 scf7180000454073:484299-484662 + TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGCTTGTGTG-------------------TGTGCGAGTGTGTT---TGTTTGA----------------------------------------------------GTGTGTGAG---CGAGTCCATTCATAAACTTTGTCTACACAGAA-A---A------------GAAT--------TGTG-------------------TGAAATTCGAA--ATAGTCACGAATGCTTT--------------------------AATCAAATA----------------------------------------TAAATTAAG--ATCAATGAATATTATTTTCTGTGCCCACGTTGGATT-TATATA----------T-TTTTTTCTGGTT-G-------------------------------------CAATGCTAATCCATGTGTGT--TCTGTTCTCT--CT-----TATTT----CCCGATCC--GAT-------------------------------------------------------------------------C----------CGATCCGATCAT-------------------------------------------GTGATCCTC-----------CGCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAAT
droKik1 scf7180000302395:234458-234556 - TTGCTTGCAAAAAACCGCATGCAAAAATAATAATTCAACAGATAAT---AGAGGTGT------------------------------GTGTGTG-GTG------------TG---GGTGTGCGAG---------------------------------------------------------------------------T-------GTTCATTCACATATTTTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3 scaffold_13248:2216576-2216945 - dan_1539 TTGCTTGCAAAAAAACGCATGCAAAAAT---AATTCAACAGATAAT---AGAGGTGT------------------------------GTGTGTGTGTG------------TG-----------TGTGTGTATGT-GTGTGGGT----GGTGTTTTATTTTTCTCTCTCTGTATGAGTATATGTGTGTC--TGTGTGTGGGTGTCA----TTCATTCATTTATTC---------AGAG-T------------------------------------------------------------------A------------------------------------------TC--------------------AATGATTCG-------------------------------TTGGAA-TGGATTTCGAT-------------TCTAT---------TAT-T---TTTTTTTGTT-CAAG----TG---AA------AAACAATAT-------TCATTGCTAATCCATGTGTTTTATATTCTCTCT--CTTCTCTTTTTTTCTC-----TCGGT----------------------------------------------------------------------------GTTGCT---------------GT-----------------------G-TGTTCCTTATCCTTA-TCGATATCCTG---------AAAACAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACAATGTGTGCCAAT
droBip1 scf7180000396575:674846-675162 + TTGCTTGCAAAAAAACGCATGCAAAAAT---AATTCAACAGATAAT---AGAGGTGCGGGGGTGGTATTTTTTCTCAATTTCTCTCTGTGTGTGTGTA------------TG-----AGTATGA-----------GTGTGT----------------------------------------------------GTGTGTCTG--------TCATTCATAAAA----------------A---A------------TA----------------------------------------------------ATA------------------------------------TAAAATA-------------TGATTGAG-------------------------------------------------------------------------------TAT-T-TTTTTTCAAGTG-T-------------A------AAATATT--------ATCCATGCTAATCCATGTGTTCTCTATTCTCTCT--CT-----TTTTTTCTC-----TCGGT----------------------------------------------------------------------------GTCGCT------------G-TGTGTTATCCTTT------------------------------------ATCCTTTTACAAAAAAAAACAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACAATGTGCGCCAAT
dp5 XL_group1e:4786659-4786825 + ATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATACCCATG-----TAC---------------------------------------------AT---------------------------------------------------------------------------------ATCT-----TC---TTCTTTTTGTT-CTCG----TG---CTAAC--A--------C-------CCAATGCTAATCCATGTGTTTGATCTG-----TTTCT-----CCTA-TCTA-----TCGGT----------------------------------------------------------------------------------------GAT-------------CCCT------------------------------ACACG-TGCCCT-------------ACAGGACATAATGTGCCAACAAAAGCAGCG---AACAACGGGACAATGTGCGCCAAT
droPer2 scaffold_17:1742151-1742317 + ATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATACCCATG-----TAC---------------------------------------------AT---------------------------------------------------------------------------------ATCT-----TC---TTCTTTTTGTT-CTCG----TG---CTAAC--A--------C-------CCAATGCTAATCCATGTGTTTGATCTG-----TTTCT-----CCTA-TCTA-----TCGGT----------------------------------------------------------------------------------------GAT-------------CCCT------------------------------ACACG-TGCCTT-------------ACAGGACATAATGTGCCAACAAAAGCAGCG---AACAACGGGACAATGTGCGCCAAT
droWil2 scf2_1100000004963:4340625-4340876 + dwi_4025 TTGCTTGCAAAAGAACGCATGCAAAACT---AATTCAACAGATAAT---CGAGGTA--------------------------------------------------------------------------------------------------------------------------------------------------C------------CACCAAATCGGATCCTA-ACAA-A---A------------GAAAGAAATTGTCGTGAT---C----------------------------------------TAT---------------------------------------------AT---------------------------------------------------------------------------------ATCTCATACTT---TTTTTTTTGTT-TTTGAC--GG---TTTTT--A--------T-------ACAATATT-ATCCATGTAACTAATTCA-----T------------------------------------------------------------------------------------AATTGTGTTTGTGTAT----------------G-T-------------GTGT------------------------------GTATG-TTTCCT-------------GTAGGACATAATGTGCCAACAAAAGCAACGTGCAACAATGGGACAATGTGTGCCAAT
droVir3 scaffold_12970:400980-401067 + TTGCTTGCAAAAAAACACATGCAAGAAT---AATTCAACAGATA---ACAGAGGTGG------------------------------GTTGACATGTA-----------------------TTAGTGTG---------TGC----------------------------------------------------TGTTTTATTT------------CACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6498:2878925-2878979 - T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGGACATAATGTGTCATCAAAAGCAACG---AGTAATGGGACAATGTGTGCCAAT
droGri2 scaffold_15203:8975251-8975575 + GTGTGTGTGTACATATGTATGTACGTAT--------------------------------------------------------------------------------------------------G-----------TGTATCGAAAAT--------------------------------------------------AG---CCACACTGTGCAGAAATTTTGTTTATCTGTTTGAAAAAGACACTAATTT--------AG---CTAGTC------------------GCCG-ATGAT--ATCCCTATC-----TTT--------------------------A----------AACAG----TGTGTGTGCT-------------------------------------------------------------------------------TTT-T-TTTTTTTTTTTT-TTTT------TT--TTT-------------------------------------------------------------------------------GATAATTTTTGTTGTAACGAGAATTTTTTTGATTTTGTTATTGTTTGAACTAATCTGTGATTGCATTTTGTTCTGTGATTTGCCACGTGCGAC-------------TCTT------------------------------AAATGATACCGT-------------GTAGGACATAATGTGCCAACAAAAGCAACG---AGCAATGGGACAATGTGTGCCAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droSim2
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGGGTGTA-----------------------TATGTGTG---------TGT----------------------------------------------------GTGTGTGTGCCACAAGTCCATTCATAAACTCTGTCTACACGGCA-A---A------------GAAA---AA---CGTGCCCTT-------------CTGGCA-TCGAA--ATATTCATA-----TAC---------------------------------------------ATGCGAGTGAT-------------------------------------------------------------------------------TCT-TTTTTTTTCTGGTG-CTCC------TGC-TCTCACG---------------ACTAATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT----T-------GCGAT-----------------------------------------------------------------------------------------------------CCTACGCGGTGA--TGGTGATGTT-------------GGTGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................AACAGAGGTGT------------------------------GTGTGGGTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000100000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACG---------------ACTAATGCTAATCCC...........................................................................................................................................................................................................................................................................1911.00110000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAGCAACG---AGCAACGGGACCATG.........2711.00100000000000001000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACAAAAGCAACG---AGCAACGGGACCA...........3011.00100000000000001000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----T-------GCGAT-----------------------------------------------------------------------------------------------------CCTACGTA............................................................................................................15200.25500000005000000000
droSec2
TTGCTTGCAAAAGAACGCATGCCAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGGGTGTA-----------------------TATATATATA----GTATGT----------------------------------------------------GTGTGTGTGCCACATGTCCATTCATAAACTCTGTCTACACGGCA-A---A------------GAAA---AA---CGTGCCCTT-------------CTGGCA-TCGAA--ATATTCATA-----TAT---------------------------------------------ATGCGAGTGAT-------------------------------------------------------------------------------TCT-T-TTTTTTCTGGTG-CTCC------TGC-TCTCACG---------------ACTTATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT----T-------GCGAT-----------------------------------------------------------------------------------------------------CCTACGCGGTGA--TGGTGATGTT-------------GATGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGGACCATGTGCGCCA..2111.0010001
dm3
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG------------TG-----CTTG--TGTGTGTATGT-GTGCGTGT----GT-----------------------------------------------TGTGTG----AAGTCCATTCATAAACTCTGTCTACACGTCA-A---A-----------AAAAA---AA---CGTGCCCTT-------------CTGGCA-TCGAA--ATACTCATA-----TCT---------------------------------------------ATGCGTGTGAT-------------------------------------------------------------------------------ACT-T--TTTTTTTAGTG-CT----------------ACG---------------ATTAATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT----T-------GCTAT-----------------------------------------------------------------------------------------------------CCTTCGCGGTGATATGGTGATGTT-------------GCTGATCCT-------------GCAGGACATAATGTGCCAACAAAAACAACG---AGCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---AGCAACGGGACCATGTGCGCCAAT2719.0090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000009
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATAATGTGCCAACA....................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---AGCAACGGGACCATGTG.......2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTGCCAACAAAAACA..............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTGATATGGTGATGTT-------------GC.............................................................................1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TG-----CTTG--TGTGTGTATGT-GTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2021.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACG---AGCAACGGGACCATGTGC......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---AGCAACGGGACCATGTGCGCC...2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.........................................ATAATAACAGAGGTGT------------------------------GTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAACG---AGCAACGGGACC............2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAAAACAACG---AGCAACGGGACCAT..........2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATGGTGATGTT-------------GCTGATCCT-------------GCAGGA...................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAATGTGCCAACAAAAACAAA............................2211.0010000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------------------------------------------------------------------------------------CCTTCGCGGTGATATGGTGATG..............................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
........................................................................................................................................TGCGTGT----GT-----------------------------------------------TGTGTG----AAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG---AGCAACGGGACCATG.........1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAACAAAAACAACG---A.......................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACG---AGCAACGGGACCATGTGCGCC...2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACG---AGCAACGGGACCATGTGC......2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGATATGGTGATGTT-------------GCTGA..........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACG---AGCAACGGGACCA...........1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................G------------TG-----CTTG--TGTGTGTATGT-GTGCGTGT----GT-----------------------------------------------TGTGTG----A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3511.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................TATGT-GTGCGTGT----GT-----------------------------------------------TGTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
..................................TCAACAGATAATAACAGAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
.......................................................................................................................................GTGCGTGT----GT-----------------------------------------------TGTGTG----AAGTCATC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGGACCATGTGCGC....1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGCAACGGGACCATGTG.......1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TG-----CTTG--TGTGTGTATGT-GTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........AAGAACGCATGCAAAAAT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................G------------TG-----CTTG--TGTGTGTATGT-GTGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.............................................................................................................................................................................................................................................................................................................................TCT---------------------------------------------ATGCGTGTGAT-------------------------------------------------------------------------------ACT-C--..........................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................GCGTGTGAT-------------------------------------------------------------------------------ACT-T--TTTTTTTA..................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................AGAGGTGT------------------------------GTGTGTGTGTG------------TG-----...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000010000000000000000000000000000
.....................................................................................................................CTTG--TGTGTGTATGT-GTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
...................................................AGGTGT------------------------------GTGTGTGTGTG------------TG-----C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GGTGT------------------------------GTGTGTGTGTG------------TG-----CT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
............................................................................................................................GTGTGTATGT-GTGCGTGT----GT-----------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2070.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
.............................................................................................................................TGTGTATGT-GTGCGTGT----GT-----------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
...........................................................................................................................TGTGTGTATGT-GTGCGTGT----G....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
...................................................................................................................................TGT-GTGCGTGT----GT-----------------------------------------------TGTGTG----T.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GTGTGTGTG------------TG-----CTTG--TGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEre2
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG-----------------------CGGGTGCA---------TGT----------------------------------------------------GTGTGTGTGTCGCCAGTCCATTCATAAACTCTGTCTACACGGAA-A---A------------GAAA---AA---CGTGCCTGT-------------CTGGCA-TCGGA--ATA------------------------------------------TCAAATACCAAATGTCTATGC----GAC-------------------------------------------------------------------------------TCT-T-TTTTTTCCAGTG-CTCC------TA--ACTCACG---------------ATTCTTGCTAATCCATGTGT----TCTGCTCTCT--CT-----TTTTT-TTA-----T---CGAT-----------------------------------------------------------------------------------------------------GCCCCGCGGTGA--TGGTGATGAT---GGTCACGA-TGGCGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAAGCAACG---AGCAAC..................2011.0011000000
...................................CAACAGATAATAACAGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
...........................................................................................................................................................................................................................................AA-A---A------------GAAA---AA---CGTGCCTGT-------------CTGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000
droYak3
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTCTGTGTG------------TG-----TGTGCGGGTGTATC---CGTATGT----------------------------------------------------GTATGTGTGTCACAAGTCCATTCATAAACTCTGTCTACACGGAA-A---A------------GAAA---AA---CGTGCC---ATATACTTGCTGTGTGAT--------AT-----------------------------------------------------------------AAGTGAT-------------------------------------------------------------------------------TCT-TTTTTTTTCTGGTG-CTCC------TG---CTCACG---------------ACTTATGCTAATTCATGTGT----TCTGCTCTCTGTCT-----TTTTT-T--T-------GCGAT-----------------------------------------------------------------------------------------------------CCTTTGCGGTGA--TGGTGATGAT---GATGATGA-TGGTGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
.......CAAAAGAACGCATGCAAAAAT---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.00200000020000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACGGGACCATGTGCGCC...2011.00100100000000
................................................................................................TG------------TG-----TGTGCGGGTGTATC---CGTATG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---GATGATGA-TGGTGATCCT-------------GC.......................................................2111.00101000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACGGGACCATGTGCGCCA..2211.00100001000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATGCTAATTCATGTGT----TCTGCTCTCTG.......................................................................................................................................................................................................................................................2811.00101000000000
droEug1
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTA-----------------------CTAGTGTGTA----CTCTGT----------------------------------------------------GTGTGTGTGTTATAGGTTCATTCATAAAAACCATCTACACAGAG-A---A------------GAAA---AC---TGTGCGGTCGT----------TTCGAT--------ATAAGC------------CATCCGGTGA--------ATGAGGAAAATCAAA-ACGAATTTTCTAT----------------------------------------------------------------------------------------ACA-TTTTTTTTATGGTG-ATCA-AAGTT---CTTTT--C--------C-------AAAATGCTAATCAATGTGT----TCTGCTCTCT--CT-----TTTTTTCGA-----TCC--G-T-------------------------------------------------------------------------CTGGC------------GA-CTTGTGATCCTTCGGTGTGA--TGTTGATGAT---CTTAA-TA-TGCTGGTCTT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---ACCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotal
No Reads
droBia1
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG------------TG----------------------------------------------------------------------------------AGAGTGTGTCACAGGTTCATTCATAAACTCCGGCTACACAGCA-A---G------------AAAA---AG---TGTGCGGCCC---------------------CAT--ATCCCCATA-----TACGATGCGCTGCGGTTGTTTATGCTCATA-AGAAATA-------------CGAATCA----------------------------------------------------------------------------------TCT-TTTTTTCTGGTG-G------------CTA-C--C--------T-------CCCATGCTAATTCCTGTGT----TCTGTTCTCT--CT-----TTTCT-CAA-----T--GCGAT-----------------------------------------------------------------------------------------------------CCTCCGC---------------------------------GATCCT-------------GCAGGACATAATGTGTCAACAAAAGCAACG---ACCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotal
No Reads
droTak1
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGCGAGTG------------TG-----TGTGCGAG---------------------------------------------------------------------------T-------GTCCATTCATAAACTCTGTCTACACGGAA-A---A------------TAAA---AA---TGTGCGGTC-------------TTGATA-T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTGGCGTGAGCTGTGTGCTG--TGTGT-GGTGTG---------TGTGT----G--------------------------------------CCAATGCGAGTGTGTGTT-TTACTCCATTCATAAACTTTGTATGCACAGAA-A---A------------GAAA---TT---CGTTAT---GTAT----------------------ACCAGC------------TATCC------------------------------------------------GATTCG-------------------------------ATGCAAATTGTTTTCTGTG--------------TAT--G-------ATTT-TTTTTTCTGGTGTCTGA----TG---CTAAT--C--------CATGTGAAACCATGCTAATCCCTGTGT----TCTGCTCTCT--CT-----TTTTT-TGA-----TCC--G-T-------------------------------------------------------------------------CTGCT------------AC-CGT-------------------------------------------GTGATCCT-------------GCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotal
No Reads
droRho1
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGTGTGTGTG------------TG-----TGTGT-GGTGTG---------TGCGT----G---------------------------------------------GTGTGTGT-------GTCCATTCATAAACTCTGTCTACACAGAA-A---A------------GAAA---AT---CGTC---------------------------GAATGAAAGT------------CATCCG------------------------------------------------TTTCGGTGGTTTCAGTTAATGTGAACTGGCGAAGCGATCGAAATTGTTTTCTGTGTACACCTTGG--T-TAT--G-------TTCT-TTTTTTCTGGTG-C-------------------------------------CTATGCTAATCCATGTGT----TCTGCTCTCT--CT-----TTTCC-CGA-----TCC--G-T-------------------------------------------------------------------------C----------TGAT-------------CCTTCGCG--------------------------------CATCCTC------------CCAGGACATAATGTGCCAACAAAAGCAACG---ACCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotal
No Reads
droFic1
TTGCTTGCAAAAGAACGCATGCAAAAAT---AATTCAACAGATAATAACAGAGGTGT------------------------------GTGCTTGTGTG-------------------TGTGCGAGTGTGTT---TGTTTGA----------------------------------------------------GTGTGTGAG---CGAGTCCATTCATAAACTTTGTCTACACAGAA-A---A------------GAAT--------TGTG-------------------TGAAATTCGAA--ATAGTCACGAATGCTTT--------------------------AATCAAATA----------------------------------------TAAATTAAG--ATCAATGAATATTATTTTCTGTGCCCACGTTGGATT-TATATA----------T-TTTTTTCTGGTT-G-------------------------------------CAATGCTAATCCATGTGTGT--TCTGTTCTCT--CT-----TATTT----CCCGATCC--GAT-------------------------------------------------------------------------C----------CGATCCGATCAT-------------------------------------------GTGATCCTC-----------CGCAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACCATGTGCGCCAATSizeHit CountTotal NormTotal
No Reads
droKik1
TTGCTTGCAAAAAACCGCATGCAAAAATAATAATTCAACAGATAAT---AGAGGTGT------------------------------GTGTGTG-GTG------------TG---GGTGTGCGAG---------------------------------------------------------------------------T-------GTTCATTCACATATTTTTTTTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
TTGCTTGCAAAAAAACGCATGCAAAAAT---AATTCAACAGATAAT---AGAGGTGT------------------------------GTGTGTGTGTG------------TG-----------TGTGTGTATGT-GTGTGGGT----GGTGTTTTATTTTTCTCTCTCTGTATGAGTATATGTGTGTC--TGTGTGTGGGTGTCA----TTCATTCATTTATTC---------AGAG-T------------------------------------------------------------------A------------------------------------------TC--------------------AATGATTCG-------------------------------TTGGAA-TGGATTTCGAT-------------TCTAT---------TAT-T---TTTTTTTGTT-CAAG----TG---AA------AAACAATAT-------TCATTGCTAATCCATGTGTTTTATATTCTCTCT--CTTCTCTTTTTTTCTC-----TCGGT----------------------------------------------------------------------------GTTGCT---------------GT-----------------------G-TGTTCCTTATCCTTA-TCGATATCCTG---------AAAACAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACAATGTGTGCCAATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAACG---AGCAACGGGAC.............2011.001010000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCAACG---AGCAACGGGACAATGT........2611.001010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGACATAATGTGCCAACAAAAGCAACG---........................2711.001100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCTTTTTTTCTC-----TCGGT----------------------------------------------------------------------------GTTGCT---------------G..........................................................................................................................2611.001100000
............................................................................................................................GTGTGTATGT-GTGTGGGT----GGTG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.501000001
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCTCTTTTTTTCTC-----TCCT.............................................................................................................................................................................................................................20120.081010000
...................................................AGGTGT------------------------------GTGTGTGTGTG------------TG-----------TGTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24160.061100000
...............................................................................................GTG------------TG-----------TGTGTGTATGT-GT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.051100000
.....................................................GTGT------------------------------GTGTGTGTGTG------------TG-----------TGTGTGTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.051000001
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACG---AGCAACGGGGA.............17200.051000100
droBip1
TTGCTTGCAAAAAAACGCATGCAAAAAT---AATTCAACAGATAAT---AGAGGTGCGGGGGTGGTATTTTTTCTCAATTTCTCTCTGTGTGTGTGTA------------TG-----AGTATGA-----------GTGTGT----------------------------------------------------GTGTGTCTG--------TCATTCATAAAA----------------A---A------------TA----------------------------------------------------ATA------------------------------------TAAAATA-------------TGATTGAG-------------------------------------------------------------------------------TAT-T-TTTTTTCAAGTG-T-------------A------AAATATT--------ATCCATGCTAATCCATGTGTTCTCTATTCTCTCT--CT-----TTTTTTCTC-----TCGGT----------------------------------------------------------------------------GTCGCT------------G-TGTGTTATCCTTT------------------------------------ATCCTTTTACAAAAAAAAACAGGACATAATGTGCCAACAAAAGCAACG---AGCAACGGGACAATGTGCGCCAATSizeHit CountTotal NormTotal
No Reads
dp5
ATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATACCCATG-----TAC---------------------------------------------AT---------------------------------------------------------------------------------ATCT-----TC---TTCTTTTTGTT-CTCG----TG---CTAAC--A--------C-------CCAATGCTAATCCATGTGTTTGATCTG-----TTTCT-----CCTA-TCTA-----TCGGT----------------------------------------------------------------------------------------GAT-------------CCCT------------------------------ACACG-TGCCCT-------------ACAGGACATAATGTGCCAACAAAAGCAGCG---AACAACGGGACAATGTGCGCCAATSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAAAAGCAGCG---AACAACGG................2211.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGCAGCG---AACAACGG................1811.0010100000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCG---AACAACGGGACAATGTGCGCC...2511.0010100000000
droPer2
ATAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT--ATACCCATG-----TAC---------------------------------------------AT---------------------------------------------------------------------------------ATCT-----TC---TTCTTTTTGTT-CTCG----TG---CTAAC--A--------C-------CCAATGCTAATCCATGTGTTTGATCTG-----TTTCT-----CCTA-TCTA-----TCGGT----------------------------------------------------------------------------------------GAT-------------CCCT------------------------------ACACG-TGCCTT-------------ACAGGACATAATGTGCCAACAAAAGCAGCG---AACAACGGGACAATGTGCGCCAATSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG---AACAACGGGACAATGTG.......2011.001001000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATAATGTGCCAACAAAAGCAGCG---........................2411.001010000
droWil2
TTGCTTGCAAAAGAACGCATGCAAAACT---AATTCAACAGATAAT---CGAGGTA--------------------------------------------------------------------------------------------------------------------------------------------------C------------CACCAAATCGGATCCTA-ACAA-A---A------------GAAAGAAATTGTCGTGAT---C----------------------------------------TAT---------------------------------------------AT---------------------------------------------------------------------------------ATCTCATACTT---TTTTTTTTGTT-TTTGAC--GG---TTTTT--A--------T-------ACAATATT-ATCCATGTAACTAATTCA-----T------------------------------------------------------------------------------------AATTGTGTTTGTGTAT----------------G-T-------------GTGT------------------------------GTATG-TTTCCT-------------GTAGGACATAATGTGCCAACAAAAGCAACGTGCAACAATGGGACAATGTGTGCCAATSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........AAAGAACGCATGCAAAACT---AATTCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.00100100
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTGCAACAATGGGACAATGTGTGCCA..2911.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGTAT----------------G-T-------------GTGT------------------------------GTATG-TTT.........................................................................2211.00100010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGTTTGTGTAT----------------G-T-------------GTG.................................................................................................................2111.00100001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGCAACGTGCAACAATGGGAC.............2311.00100100
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTTGTGTAT----------------G-T-------------GTGT------------------------------GT................................................................................20200.05100010
droVir3
TTGCTTGCAAAAAAACACATGCAAGAAT---AATTCAACAGATA---ACAGAGGTGG------------------------------GTTGACATGTA-----------------------TTAGTGTG---------TGC----------------------------------------------------TGTTTTATTT------------CACAA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
...............CACATGCAAGAAT---AATTCAACA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
.............AACACATGCAAGAAT---AATTCAACAGATA---A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.001001000000000000000000000000000000000000000000000000000000000000
.....................................ACAGATA---ACAGAGGTGG------------------------------GTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000000010
droMoj3
T--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTAGGACATAATGTGTCATCAAAAGCAACG---AGTAATGGGACAATGTGTGCCAATSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CG---AGTAATGGGACAATGTG.......1911.001000001
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---AGTAATGGGACAATGTGTGCCA..2311.001000001
droGri2
GTGTGTGTGTACATATGTATGTACGTAT--------------------------------------------------------------------------------------------------G-----------TGTATCGAAAAT--------------------------------------------------AG---CCACACTGTGCAGAAATTTTGTTTATCTGTTTGAAAAAGACACTAATTT--------AG---CTAGTC------------------GCCG-ATGAT--ATCCCTATC-----TTT--------------------------A----------AACAG----TGTGTGTGCT-------------------------------------------------------------------------------TTT-T-TTTTTTTTTTTT-TTTT------TT--TTT-------------------------------------------------------------------------------GATAATTTTTGTTGTAACGAGAATTTTTTTGATTTTGTTATTGTTTGAACTAATCTGTGATTGCATTTTGTTCTGTGATTTGCCACGTGCGAC-------------TCTT------------------------------AAATGATACCGT-------------GTAGGACATAATGTGCCAACAAAAGCAACG---AGCAATGGGACAATGTGTGCCAATSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/19/2015 at 05:11 PM